==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN, PROTEIN BINDING 22-JUN-06 2DS8 . COMPND 2 MOLECULE: ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR E.Y.PARK,B.G.LEE,S.B.HONG,H.W.KIM,H.K.SONG . 96 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5874.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 60.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 26.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 9 A G 0 0 140 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 37.2 -7.4 4.6 8.8 2 10 A K - 0 0 82 1,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.666 360.0-106.6 -93.5 146.2 -5.2 7.4 7.6 3 11 A L - 0 0 96 -2,-0.3 2,-0.4 9,-0.1 -1,-0.1 -0.599 39.5-165.4 -72.8 118.4 -6.5 10.2 5.3 4 12 A L - 0 0 33 -2,-0.5 9,-2.1 94,-0.0 2,-0.3 -0.845 2.2-162.1-108.0 143.2 -5.0 9.6 1.8 5 13 A Y B -A 12 0A 112 -2,-0.4 7,-0.2 7,-0.2 2,-0.2 -0.918 28.4-101.8-127.3 151.9 -5.0 12.2 -1.0 6 14 A C > - 0 0 4 5,-3.0 4,-1.5 -2,-0.3 21,-0.2 -0.490 28.8-142.6 -65.3 133.4 -4.6 12.3 -4.7 7 15 A S T 4 S+ 0 0 37 19,-2.8 -1,-0.2 -2,-0.2 20,-0.2 0.685 95.8 47.2 -73.6 -18.4 -1.0 13.4 -5.4 8 16 A F T 4 S+ 0 0 10 18,-0.5 -1,-0.2 64,-0.1 19,-0.1 0.909 128.7 13.8 -89.6 -48.7 -2.2 15.4 -8.4 9 17 A C T 4 S- 0 0 58 2,-0.1 -2,-0.2 63,-0.1 18,-0.1 0.554 90.7-125.2-107.7 -10.9 -5.2 17.4 -7.2 10 18 A G < + 0 0 43 -4,-1.5 2,-0.1 1,-0.3 -3,-0.1 0.459 58.4 142.5 82.5 -1.1 -5.1 17.1 -3.4 11 19 A K - 0 0 72 -6,-0.1 -5,-3.0 1,-0.1 -1,-0.3 -0.462 48.1-121.3 -73.1 148.1 -8.6 15.7 -3.0 12 20 A S B >> -A 5 0A 11 -7,-0.2 3,-2.3 -2,-0.1 4,-0.8 -0.372 24.5-103.0 -86.0 168.5 -9.0 13.0 -0.3 13 21 A Q T 34 S+ 0 0 35 -9,-2.1 3,-0.3 1,-0.3 -8,-0.1 0.763 122.7 61.2 -59.2 -24.6 -10.2 9.5 -0.7 14 22 A H T 34 S+ 0 0 142 -10,-0.3 -1,-0.3 1,-0.2 -9,-0.1 0.461 103.8 48.6 -82.6 -1.8 -13.5 10.7 0.8 15 23 A E T <4 S+ 0 0 118 -3,-2.3 2,-0.2 3,-0.0 -1,-0.2 0.515 105.3 61.2-112.8 -12.0 -14.0 13.2 -2.1 16 24 A V S < S- 0 0 5 -4,-0.8 3,-0.1 -3,-0.3 12,-0.0 -0.731 74.8-126.1-117.8 166.8 -13.4 11.0 -5.1 17 25 A R S S+ 0 0 175 1,-0.3 2,-0.3 -2,-0.2 -1,-0.1 0.869 95.0 7.6 -75.4 -39.5 -15.0 7.9 -6.7 18 26 A K - 0 0 24 2,-0.0 11,-1.6 -3,-0.0 2,-0.4 -0.999 57.4-162.6-146.6 146.6 -11.7 6.0 -6.8 19 27 A L E -B 28 0B 0 80,-1.5 79,-2.6 -2,-0.3 80,-1.7 -0.993 13.1-161.3-131.0 122.3 -8.1 6.5 -5.5 20 28 A I E -BC 27 97B 0 7,-3.1 7,-2.3 -2,-0.4 2,-0.4 -0.888 9.1-144.4-109.0 134.4 -5.3 4.4 -7.0 21 29 A A E -BC 26 96B 13 75,-3.6 75,-2.2 -2,-0.4 5,-0.2 -0.795 14.7-175.7-105.3 139.3 -2.0 3.9 -5.3 22 30 A G - 0 0 11 3,-3.1 36,-0.2 -2,-0.4 37,-0.1 -0.327 60.8 -67.3-104.7-166.3 1.5 3.6 -6.7 23 31 A P S S- 0 0 92 0, 0.0 35,-0.1 0, 0.0 -2,-0.0 0.908 124.9 -11.5 -53.3 -47.5 4.5 2.9 -4.4 24 32 A S S S+ 0 0 106 33,-0.4 2,-0.3 2,-0.0 34,-0.1 0.061 126.3 69.8-144.3 25.5 4.4 6.2 -2.6 25 33 A V - 0 0 19 32,-0.1 -3,-3.1 33,-0.1 2,-0.3 -0.906 58.1-149.5-140.6 167.6 1.9 8.3 -4.6 26 34 A Y E -B 21 0B 62 -2,-0.3 -19,-2.8 -5,-0.2 -18,-0.5 -0.980 5.4-168.3-142.1 151.7 -1.8 8.4 -5.4 27 35 A I E -B 20 0B 0 -7,-2.3 -7,-3.1 -2,-0.3 2,-0.2 -0.997 14.3-142.9-142.2 136.1 -4.1 9.4 -8.3 28 36 A C E > -B 19 0B 0 -2,-0.4 4,-2.0 -9,-0.2 -9,-0.2 -0.483 30.0-106.3 -93.9 168.4 -7.9 9.8 -8.3 29 37 A D H > S+ 0 0 4 -11,-1.6 4,-1.7 1,-0.2 5,-0.1 0.829 117.7 57.5 -61.8 -33.8 -10.4 9.0 -11.1 30 38 A E H > S+ 0 0 55 -12,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.923 109.4 43.4 -64.8 -44.4 -10.9 12.7 -11.9 31 39 A C H > S+ 0 0 7 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.846 108.8 57.8 -70.9 -31.4 -7.2 13.2 -12.6 32 40 A V H X S+ 0 0 0 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.891 105.9 52.5 -62.5 -36.2 -7.0 9.9 -14.5 33 41 A D H X S+ 0 0 70 -4,-1.7 4,-1.9 2,-0.2 -2,-0.2 0.928 107.5 49.5 -63.5 -47.0 -9.7 11.5 -16.7 34 42 A L H X S+ 0 0 81 -4,-1.8 4,-1.7 1,-0.2 -1,-0.2 0.878 109.1 52.7 -60.4 -38.3 -7.6 14.7 -17.2 35 43 A C H X S+ 0 0 0 -4,-2.3 4,-2.8 1,-0.2 -1,-0.2 0.853 106.4 54.6 -66.3 -33.1 -4.7 12.5 -18.2 36 44 A N H X S+ 0 0 18 -4,-1.7 4,-2.3 2,-0.2 5,-0.2 0.912 105.7 50.9 -65.7 -43.3 -6.9 10.7 -20.7 37 45 A D H X>S+ 0 0 65 -4,-1.9 4,-1.9 2,-0.2 5,-1.4 0.878 113.2 47.1 -61.8 -37.7 -7.9 14.0 -22.4 38 46 A I H <5S+ 0 0 49 -4,-1.7 -2,-0.2 2,-0.2 -1,-0.2 0.963 114.4 44.1 -67.7 -53.3 -4.2 14.9 -22.6 39 47 A I H <5S+ 0 0 58 -4,-2.8 -2,-0.2 1,-0.2 -1,-0.2 0.792 117.9 46.8 -62.5 -28.2 -3.1 11.5 -24.0 40 48 A R H <5S- 0 0 113 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.801 102.9-142.0 -81.8 -31.0 -6.1 11.6 -26.4 41 49 A E T <5 + 0 0 169 -4,-1.9 2,-0.3 1,-0.2 -3,-0.2 0.980 60.7 91.9 66.6 61.0 -5.3 15.2 -27.3 42 50 A E < 0 0 124 -5,-1.4 -1,-0.2 0, 0.0 -2,-0.2 -0.931 360.0 360.0-173.9 153.2 -8.8 16.6 -27.5 43 51 A I 0 0 211 -2,-0.3 -5,-0.0 -3,-0.1 0, 0.0 -0.985 360.0 360.0-135.3 360.0 -11.4 18.4 -25.4 44 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 45 160 P A 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 147.1 -2.9 21.7 -13.0 46 161 P L - 0 0 46 26,-0.1 2,-0.3 -12,-0.0 26,-0.2 -0.923 360.0-158.2-132.2 156.9 -1.0 19.2 -15.1 47 162 P R E -D 71 0C 124 24,-2.0 24,-2.9 -2,-0.3 2,-0.6 -0.982 20.5-121.2-137.7 149.2 1.9 19.5 -17.5 48 163 P V E +D 70 0C 81 -2,-0.3 22,-0.2 22,-0.2 -2,-0.0 -0.811 27.2 172.8 -91.8 120.4 3.1 17.3 -20.4 49 164 P V 0 0 36 20,-2.8 21,-0.2 -2,-0.6 -1,-0.2 0.829 360.0 360.0 -90.2 -40.5 6.6 16.1 -19.9 50 165 P K 0 0 85 19,-1.9 20,-0.1 14,-0.0 -2,-0.1 0.426 360.0 360.0-145.4 360.0 6.5 13.9 -22.9 51 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 52 10 B K 0 0 132 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 130.6 16.7 16.3 -16.2 53 11 B L - 0 0 83 9,-0.0 2,-0.3 10,-0.0 9,-0.0 -0.569 360.0-158.7 -73.7 123.4 15.7 12.7 -16.5 54 12 B L - 0 0 33 -2,-0.4 9,-2.2 -5,-0.0 2,-0.3 -0.782 4.1-157.4-107.0 149.0 12.2 12.1 -15.2 55 13 B Y B -F 62 0D 120 -2,-0.3 2,-0.3 7,-0.2 7,-0.2 -0.935 27.5-105.2-126.4 147.9 10.5 8.9 -14.0 56 14 B C > - 0 0 2 5,-3.1 4,-1.5 -2,-0.3 21,-0.2 -0.523 25.6-148.5 -67.5 129.4 6.9 7.7 -13.7 57 15 B S T 4 S+ 0 0 37 19,-2.2 -33,-0.4 -2,-0.3 20,-0.2 0.719 92.7 50.0 -72.7 -21.1 6.1 7.8 -10.0 58 16 B F T 4 S+ 0 0 2 18,-0.6 -1,-0.2 -36,-0.2 19,-0.1 0.857 128.0 12.5 -88.7 -38.0 3.8 4.8 -10.3 59 17 B C T 4 S- 0 0 59 2,-0.1 -2,-0.2 -37,-0.1 -1,-0.1 0.546 92.7-123.7-115.9 -12.6 5.8 2.2 -12.3 60 18 B G < + 0 0 46 -4,-1.5 -3,-0.1 1,-0.3 2,-0.1 0.352 58.6 144.0 88.0 -7.3 9.3 3.7 -12.1 61 19 B K - 0 0 74 -6,-0.1 -5,-3.1 1,-0.1 -1,-0.3 -0.375 49.4-119.8 -68.4 144.0 10.0 3.8 -15.8 62 20 B S B >> -F 55 0D 11 -7,-0.2 3,-2.1 1,-0.1 4,-0.6 -0.370 28.1-105.4 -78.0 162.4 12.0 6.7 -17.2 63 21 B Q G >4 S+ 0 0 35 -9,-2.2 3,-0.5 1,-0.3 -1,-0.1 0.781 121.1 61.0 -58.6 -27.3 10.5 9.0 -19.8 64 22 B H G 34 S+ 0 0 140 -10,-0.2 -1,-0.3 1,-0.2 -9,-0.1 0.584 102.7 51.5 -77.6 -8.9 12.6 7.3 -22.4 65 23 B E G <4 S+ 0 0 122 -3,-2.1 2,-0.2 0, 0.0 -1,-0.2 0.532 106.8 59.2-102.9 -10.1 10.9 4.0 -21.8 66 24 B V S << S- 0 0 6 -4,-0.6 3,-0.1 -3,-0.5 12,-0.0 -0.740 73.5-132.0-117.8 166.4 7.3 5.3 -22.1 67 25 B R S S+ 0 0 201 1,-0.2 2,-0.3 -2,-0.2 -1,-0.1 0.854 90.8 15.8 -83.6 -38.8 5.2 7.0 -24.8 68 26 B K - 0 0 56 -18,-0.1 11,-1.4 2,-0.0 2,-0.4 -0.979 58.7-169.2-138.5 149.3 3.8 9.7 -22.6 69 27 B L E - E 0 78C 0 -2,-0.3 -20,-2.8 9,-0.2 -19,-1.9 -0.967 7.2-171.6-142.1 121.3 4.6 11.2 -19.2 70 28 B I E -DE 48 77C 0 7,-2.9 7,-2.6 -2,-0.4 2,-0.4 -0.907 9.5-154.7-114.3 141.0 2.3 13.7 -17.4 71 29 B A E +DE 47 76C 1 -24,-2.9 -24,-2.0 -2,-0.4 5,-0.2 -0.908 16.5 175.5-124.2 147.6 3.3 15.6 -14.3 72 30 B G E > - E 0 75C 9 3,-3.2 3,-1.2 -2,-0.4 2,-0.8 -0.434 66.5 -36.7-120.9-162.7 1.5 17.1 -11.3 73 31 B P T 3 S- 0 0 91 0, 0.0 3,-0.1 0, 0.0 -1,-0.0 -0.497 126.9 -27.7 -66.8 106.1 3.1 18.7 -8.3 74 32 B S T 3 S+ 0 0 119 -2,-0.8 2,-0.3 1,-0.2 -66,-0.0 0.856 123.6 98.3 55.0 38.9 6.2 16.5 -7.6 75 33 B V E < -E 72 0C 2 -3,-1.2 -3,-3.2 -67,-0.0 2,-0.3 -0.976 50.2-167.8-155.6 141.6 4.5 13.5 -9.2 76 34 B Y E -E 71 0C 46 -2,-0.3 -19,-2.2 -5,-0.2 -18,-0.6 -0.963 3.0-174.5-133.2 148.7 4.6 11.8 -12.6 77 35 B I E -E 70 0C 0 -7,-2.6 -7,-2.9 -2,-0.3 2,-0.1 -0.995 13.5-144.3-145.1 136.8 2.5 9.2 -14.4 78 36 B C E > -E 69 0C 1 -2,-0.3 4,-2.3 -9,-0.2 -9,-0.2 -0.417 31.2-103.6 -95.4 173.3 3.0 7.5 -17.8 79 37 B D H > S+ 0 0 32 -11,-1.4 4,-2.4 1,-0.2 5,-0.1 0.837 118.7 57.2 -63.9 -34.7 0.6 6.3 -20.4 80 38 B E H > S+ 0 0 75 -12,-0.3 4,-1.8 2,-0.2 -1,-0.2 0.906 110.5 42.3 -64.7 -42.4 1.0 2.7 -19.4 81 39 B C H > S+ 0 0 6 2,-0.2 4,-2.6 1,-0.2 -2,-0.2 0.887 112.7 53.0 -72.1 -38.4 -0.1 3.4 -15.8 82 40 B V H X S+ 0 0 1 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.917 107.7 53.8 -60.6 -41.2 -2.9 5.7 -16.9 83 41 B D H X S+ 0 0 87 -4,-2.4 4,-1.6 1,-0.2 -2,-0.2 0.918 110.0 45.3 -58.8 -46.7 -4.1 2.8 -19.1 84 42 B L H X S+ 0 0 86 -4,-1.8 4,-2.2 1,-0.2 -1,-0.2 0.890 109.0 56.8 -65.7 -38.3 -4.2 0.5 -16.2 85 43 B C H X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 -1,-0.2 0.878 104.5 52.8 -60.4 -37.1 -5.9 3.1 -14.1 86 44 B N H X S+ 0 0 14 -4,-2.0 4,-2.8 2,-0.2 -1,-0.2 0.897 106.9 51.9 -65.1 -39.3 -8.7 3.3 -16.7 87 45 B D H X S+ 0 0 79 -4,-1.6 4,-0.9 2,-0.2 -2,-0.2 0.915 110.8 48.8 -62.3 -41.9 -9.1 -0.5 -16.5 88 46 B I H X S+ 0 0 24 -4,-2.2 4,-1.7 2,-0.2 3,-0.5 0.936 113.9 44.9 -62.3 -48.1 -9.4 -0.1 -12.7 89 47 B I H < S+ 0 0 40 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.873 116.0 45.8 -65.3 -38.1 -12.0 2.7 -13.0 90 48 B R H < S+ 0 0 193 -4,-2.8 -1,-0.2 -5,-0.2 -2,-0.2 0.582 108.5 61.3 -80.6 -9.9 -14.0 0.9 -15.7 91 49 B E H < 0 0 158 -4,-0.9 -2,-0.2 -3,-0.5 -1,-0.2 0.905 360.0 360.0 -81.7 -47.6 -13.8 -2.3 -13.7 92 50 B E < 0 0 93 -4,-1.7 -3,-0.0 -5,-0.1 -4,-0.0 -0.029 360.0 360.0-143.1 360.0 -15.6 -1.2 -10.6 93 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 94 160 Q A 0 0 99 0, 0.0 2,-0.2 0, 0.0 -35,-0.0 0.000 360.0 360.0 360.0 153.5 2.4 -2.4 -9.2 95 161 Q L - 0 0 34 -73,-0.1 2,-0.3 -75,-0.0 -73,-0.2 -0.548 360.0-168.6 -80.4 144.1 -0.8 -0.3 -8.9 96 162 Q R E -C 21 0B 171 -75,-2.2 -75,-3.6 -2,-0.2 2,-0.6 -0.972 22.4-117.8-133.7 148.3 -3.2 -1.0 -6.0 97 163 Q V E +C 20 0B 73 -2,-0.3 -77,-0.2 -77,-0.2 -79,-0.0 -0.763 26.9 174.0 -91.2 123.2 -6.7 0.2 -5.3 98 164 Q V 0 0 50 -79,-2.6 -78,-0.2 -2,-0.6 -1,-0.2 0.810 360.0 360.0 -90.0 -39.1 -7.2 2.3 -2.1 99 165 Q K 0 0 103 -80,-1.7 -80,-1.5 -85,-0.0 -1,-0.4 -0.995 360.0 360.0-142.6 360.0 -10.8 3.1 -3.0