==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 11-JUL-08 3DS0 . COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR S.IGONET,M.C.VANEY,F.A.REY . 94 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6234.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 45.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 147 A P 0 0 182 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.6 -18.2 20.9 -9.2 2 148 A T - 0 0 97 23,-0.0 2,-0.4 2,-0.0 3,-0.0 -0.305 360.0-143.7 -86.5 169.3 -16.6 17.5 -9.6 3 149 A S > - 0 0 27 1,-0.1 3,-2.1 26,-0.1 4,-0.3 -0.984 22.7-125.0-128.8 143.6 -15.0 16.1 -12.8 4 150 A I G > S+ 0 0 0 -2,-0.4 3,-1.5 1,-0.3 22,-0.1 0.817 112.6 66.2 -53.6 -28.1 -15.0 12.5 -13.9 5 151 A L G 3 S+ 0 0 110 1,-0.3 -1,-0.3 -3,-0.0 -3,-0.0 0.727 94.0 59.6 -67.0 -19.0 -11.2 12.9 -14.0 6 152 A D G < S+ 0 0 108 -3,-2.1 2,-0.7 2,-0.0 -1,-0.3 0.518 81.2 100.1 -86.5 -8.4 -11.3 13.2 -10.2 7 153 A I < + 0 0 11 -3,-1.5 2,-0.4 -4,-0.3 40,-0.1 -0.717 44.9 157.9 -90.7 112.2 -13.0 9.8 -9.6 8 154 A R - 0 0 132 -2,-0.7 40,-0.2 38,-0.0 2,-0.2 -0.984 45.2-103.3-133.1 144.8 -10.5 7.2 -8.5 9 155 A Q - 0 0 11 38,-2.5 6,-0.1 -2,-0.4 43,-0.0 -0.461 40.6-115.6 -66.3 134.4 -11.0 3.9 -6.6 10 156 A G > - 0 0 20 -2,-0.2 3,-0.7 4,-0.1 39,-0.2 -0.250 30.2-103.9 -64.2 157.8 -9.9 4.1 -3.0 11 157 A P T 3 S+ 0 0 115 0, 0.0 40,-0.2 0, 0.0 -1,-0.1 0.822 120.8 15.5 -57.2 -32.7 -7.1 1.8 -1.9 12 158 A K T 3 S+ 0 0 144 2,-0.1 3,-0.1 37,-0.0 -2,-0.0 0.214 95.2 132.9-122.3 12.4 -9.5 -0.6 -0.2 13 159 A E < - 0 0 29 -3,-0.7 36,-0.2 1,-0.1 64,-0.1 -0.449 64.2-110.2 -71.5 131.5 -12.7 0.5 -1.8 14 160 A P >> - 0 0 47 0, 0.0 4,-1.8 0, 0.0 3,-0.9 -0.348 21.9-127.7 -57.1 137.6 -14.9 -2.2 -3.2 15 161 A F H 3> S+ 0 0 5 57,-0.4 4,-2.6 60,-0.3 5,-0.2 0.897 109.4 60.5 -54.9 -40.1 -14.9 -2.1 -7.0 16 162 A R H 3> S+ 0 0 160 1,-0.2 4,-1.4 2,-0.2 -1,-0.2 0.848 106.0 46.9 -57.3 -35.0 -18.8 -2.1 -6.9 17 163 A D H <> S+ 0 0 70 -3,-0.9 4,-2.2 2,-0.2 -1,-0.2 0.880 111.1 51.0 -74.0 -40.5 -18.7 1.2 -4.9 18 164 A Y H X S+ 0 0 0 -4,-1.8 4,-2.6 2,-0.2 -2,-0.2 0.918 107.8 51.7 -65.3 -44.1 -16.2 2.8 -7.2 19 165 A V H X S+ 0 0 0 -4,-2.6 4,-2.9 1,-0.2 -1,-0.2 0.918 109.0 51.5 -60.1 -41.9 -18.2 2.0 -10.3 20 166 A D H X S+ 0 0 51 -4,-1.4 4,-2.6 -5,-0.2 -1,-0.2 0.924 112.0 46.2 -60.5 -44.2 -21.3 3.5 -8.8 21 167 A R H X S+ 0 0 92 -4,-2.2 4,-2.3 2,-0.2 5,-0.2 0.910 112.3 51.1 -65.8 -39.8 -19.4 6.7 -7.9 22 168 A F H X S+ 0 0 0 -4,-2.6 4,-2.8 2,-0.2 -2,-0.2 0.947 111.6 47.8 -60.2 -48.8 -17.9 6.8 -11.4 23 169 A Y H X S+ 0 0 18 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.929 110.7 50.0 -59.9 -49.2 -21.4 6.4 -13.0 24 170 A K H X S+ 0 0 126 -4,-2.6 4,-1.0 1,-0.2 -1,-0.2 0.913 115.2 43.8 -60.0 -41.5 -23.0 9.1 -10.8 25 171 A T H >X S+ 0 0 29 -4,-2.3 4,-0.9 1,-0.2 3,-0.5 0.911 111.5 53.0 -70.8 -39.4 -20.2 11.6 -11.7 26 172 A L H >< S+ 0 0 0 -4,-2.8 3,-0.6 1,-0.2 -2,-0.2 0.867 102.2 59.5 -65.6 -34.2 -20.2 10.7 -15.4 27 173 A R H 3< S+ 0 0 152 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.866 110.3 43.3 -58.3 -36.1 -24.0 11.3 -15.6 28 174 A A H << S+ 0 0 81 -4,-1.0 -1,-0.2 -3,-0.5 -2,-0.2 0.573 89.0 113.1 -85.6 -15.6 -23.3 14.9 -14.5 29 175 A E S << S- 0 0 43 -4,-0.9 2,-1.2 -3,-0.6 -26,-0.1 -0.350 70.3-127.8 -62.7 138.1 -20.3 15.5 -16.7 30 176 A Q + 0 0 191 -2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.716 66.3 108.7 -90.1 90.0 -20.7 18.1 -19.5 31 177 A A S S- 0 0 34 -2,-1.2 5,-0.0 -5,-0.1 -2,-0.0 -0.965 72.9 -83.8-155.0 161.1 -19.6 16.1 -22.5 32 178 A S > - 0 0 60 -2,-0.3 4,-2.5 1,-0.1 5,-0.2 -0.278 40.0-114.3 -66.1 157.6 -21.0 14.4 -25.6 33 179 A Q H > S+ 0 0 119 1,-0.2 4,-1.9 2,-0.2 53,-0.2 0.879 119.3 55.6 -60.7 -35.2 -22.5 10.9 -25.3 34 180 A E H > S+ 0 0 164 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.899 109.0 46.6 -64.4 -40.7 -19.7 9.7 -27.6 35 181 A V H > S+ 0 0 50 2,-0.2 4,-3.0 1,-0.2 -2,-0.2 0.884 108.1 55.8 -68.6 -38.6 -17.1 11.1 -25.2 36 182 A K H X S+ 0 0 13 -4,-2.5 4,-1.8 2,-0.2 -2,-0.2 0.872 106.6 51.3 -61.6 -35.5 -18.9 9.6 -22.2 37 183 A A H X S+ 0 0 22 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.942 111.3 47.3 -62.1 -47.9 -18.6 6.2 -23.9 38 184 A W H X S+ 0 0 150 -4,-1.9 4,-1.6 1,-0.2 5,-0.4 0.905 109.3 53.4 -62.9 -41.2 -14.9 6.8 -24.4 39 185 A M H X>S+ 0 0 21 -4,-3.0 4,-1.7 1,-0.2 5,-0.9 0.902 111.9 46.0 -59.3 -40.4 -14.5 7.9 -20.8 40 186 A T H X5S+ 0 0 2 -4,-1.8 4,-0.6 1,-0.2 5,-0.4 0.925 111.0 52.2 -69.0 -42.0 -16.1 4.7 -19.6 41 187 A E H <5S+ 0 0 96 -4,-2.4 -1,-0.2 -5,-0.1 -2,-0.2 0.737 128.3 17.8 -64.7 -26.4 -14.0 2.6 -22.0 42 188 A T H X5S+ 0 0 50 -4,-1.6 4,-2.3 -5,-0.2 -3,-0.2 0.810 122.6 46.3-114.5 -56.0 -10.8 4.1 -20.7 43 189 A L H X5S+ 0 0 22 -4,-1.7 4,-2.7 -5,-0.4 -3,-0.2 0.810 101.7 64.2 -67.9 -31.6 -11.0 5.9 -17.3 44 190 A L H <4 S+ 0 0 31 -5,-0.4 3,-1.3 1,-0.2 -1,-0.2 0.923 118.5 56.1 -73.0 -41.5 -10.2 0.7 -15.7 46 192 A Q H 3< S+ 0 0 103 -4,-2.3 -2,-0.2 1,-0.3 -1,-0.2 0.836 111.1 42.9 -61.1 -34.2 -7.4 3.3 -15.7 47 193 A N T 3< S+ 0 0 15 -4,-2.7 -38,-2.5 -5,-0.1 -1,-0.3 0.321 87.7 110.6-101.8 8.0 -8.5 4.8 -12.4 48 194 A A S < S- 0 0 1 -3,-1.3 -3,-0.0 -4,-0.2 -33,-0.0 -0.346 82.5 -90.4 -64.7 160.6 -9.2 1.6 -10.6 49 195 A N > - 0 0 5 -39,-0.2 4,-3.2 -36,-0.2 5,-0.3 -0.255 43.6 -98.3 -73.3 162.9 -6.8 0.8 -7.8 50 196 A P H > S+ 0 0 95 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.870 121.8 49.0 -53.8 -38.8 -3.7 -1.3 -8.6 51 197 A D H > S+ 0 0 105 2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.897 117.5 39.4 -70.5 -40.5 -5.1 -4.6 -7.5 52 198 A C H > S+ 0 0 0 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.896 111.2 59.1 -72.3 -40.8 -8.4 -4.2 -9.4 53 199 A K H X S+ 0 0 55 -4,-3.2 4,-2.3 1,-0.2 5,-0.2 0.897 104.1 51.9 -53.3 -44.1 -6.6 -2.7 -12.4 54 200 A T H X S+ 0 0 101 -4,-1.9 4,-1.8 -5,-0.3 -1,-0.2 0.938 112.5 45.0 -58.1 -48.3 -4.5 -5.8 -12.8 55 201 A I H X S+ 0 0 47 -4,-1.2 4,-2.0 1,-0.2 -2,-0.2 0.923 112.7 50.0 -63.2 -47.1 -7.6 -8.0 -12.8 56 202 A L H X S+ 0 0 6 -4,-3.0 4,-1.2 1,-0.2 -1,-0.2 0.873 109.4 51.6 -63.7 -38.4 -9.6 -5.8 -15.2 57 203 A K H < S+ 0 0 144 -4,-2.3 3,-0.2 -5,-0.2 -1,-0.2 0.890 109.1 51.1 -64.6 -40.3 -6.7 -5.7 -17.7 58 204 A A H < S+ 0 0 87 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.884 104.8 56.3 -61.9 -41.9 -6.5 -9.5 -17.6 59 205 A L H < S- 0 0 73 -4,-2.0 3,-0.2 -5,-0.1 -1,-0.2 0.789 103.9-146.2 -62.0 -32.4 -10.2 -9.9 -18.3 60 206 A G >< - 0 0 22 -4,-1.2 3,-1.6 -3,-0.2 -1,-0.1 0.063 27.5 -62.9 83.6 167.4 -9.9 -7.8 -21.5 61 207 A P T 3 S+ 0 0 136 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.624 122.5 66.2 -68.2 -16.3 -12.1 -5.4 -23.4 62 208 A G T 3 S+ 0 0 75 -3,-0.2 -2,-0.1 2,-0.0 2,-0.0 0.516 76.9 115.3 -80.9 -5.9 -14.9 -7.9 -24.1 63 209 A A < - 0 0 11 -3,-1.6 2,-0.2 -7,-0.1 -3,-0.0 -0.300 61.0-132.2 -67.8 144.8 -15.8 -8.3 -20.5 64 210 A T > - 0 0 66 1,-0.1 4,-2.4 20,-0.1 5,-0.2 -0.551 24.7-110.2 -89.1 162.0 -19.2 -7.2 -19.2 65 211 A L H > S+ 0 0 9 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.909 121.7 54.3 -54.5 -42.7 -19.7 -5.0 -16.1 66 212 A E H > S+ 0 0 131 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.920 108.9 48.3 -60.4 -41.6 -21.2 -8.1 -14.4 67 213 A E H > S+ 0 0 102 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.880 110.4 51.1 -64.8 -39.3 -18.1 -10.1 -15.2 68 214 A M H X S+ 0 0 9 -4,-2.4 4,-1.8 2,-0.2 -2,-0.2 0.907 109.2 51.1 -63.7 -41.2 -15.8 -7.3 -13.9 69 215 A M H X S+ 0 0 26 -4,-2.5 4,-0.8 1,-0.2 -2,-0.2 0.929 110.6 48.3 -61.6 -46.5 -17.8 -7.2 -10.6 70 216 A T H >< S+ 0 0 102 -4,-2.2 3,-0.6 1,-0.2 -1,-0.2 0.904 111.5 50.1 -61.9 -40.4 -17.4 -10.9 -10.2 71 217 A A H 3< S+ 0 0 36 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.808 114.8 42.9 -68.5 -32.2 -13.7 -10.8 -10.9 72 218 A C H >< S+ 0 0 4 -4,-1.8 3,-2.1 -3,-0.2 -57,-0.4 0.436 81.0 132.1 -96.2 -0.8 -13.0 -8.0 -8.4 73 219 A Q T << S+ 0 0 159 -4,-0.8 3,-0.1 -3,-0.6 -3,-0.0 -0.302 80.3 6.6 -53.8 124.0 -15.3 -9.4 -5.6 74 220 A G T > S+ 0 0 51 1,-0.3 3,-1.2 4,-0.1 2,-0.5 0.398 86.9 140.7 83.5 -2.4 -13.4 -9.3 -2.3 75 221 A V T < S+ 0 0 28 -3,-2.1 -1,-0.3 1,-0.3 -60,-0.3 -0.644 83.4 9.6 -72.5 123.1 -10.4 -7.4 -3.6 76 222 A G T 3 S+ 0 0 25 -2,-0.5 -1,-0.3 1,-0.2 3,-0.2 0.158 136.9 18.9 94.3 -14.7 -9.5 -5.0 -0.8 77 223 A G < - 0 0 39 -3,-1.2 -1,-0.2 1,-0.2 -64,-0.0 0.321 24.4-168.2-102.9-143.4 -11.9 -6.8 1.4 78 224 A P - 0 0 101 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 -0.998 51.9-158.9 -73.7 -2.5 -13.8 -8.9 2.4 79 225 A G + 0 0 74 1,-0.2 2,-0.3 -3,-0.2 -2,-0.1 0.818 31.4 150.6 70.0 33.0 -14.9 -6.0 4.6 80 226 A H - 0 0 154 1,-0.1 -1,-0.2 0, 0.0 2,-0.1 -0.679 56.8 -97.0 -88.5 150.3 -16.4 -7.9 7.5 81 227 A K 0 0 202 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.456 360.0 360.0 -63.8 138.9 -16.4 -6.5 10.9 82 228 A A 0 0 135 -2,-0.1 -1,-0.1 -3,-0.0 0, 0.0 -0.468 360.0 360.0 -66.6 360.0 -13.5 -7.9 12.9 83 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 84 1 T I 0 0 25 0, 0.0 2,-0.2 0, 0.0 -40,-0.1 0.000 360.0 360.0 360.0 162.7 -17.6 -1.3 -21.2 85 2 T T > - 0 0 43 -45,-0.1 4,-1.3 -44,-0.1 3,-0.3 -0.587 360.0-103.7-113.7 172.5 -19.5 1.8 -22.4 86 3 T F H > S+ 0 0 9 1,-0.2 4,-2.4 2,-0.2 3,-0.3 0.905 121.7 58.7 -64.3 -39.3 -21.6 4.5 -20.8 87 4 T E H > S+ 0 0 140 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.830 100.7 56.9 -55.6 -35.0 -24.8 2.7 -22.2 88 5 T D H > S+ 0 0 64 -3,-0.3 4,-2.2 2,-0.2 -1,-0.2 0.894 107.5 47.7 -63.3 -40.1 -23.7 -0.4 -20.2 89 6 T L H X S+ 0 0 0 -4,-1.3 4,-2.6 -3,-0.3 5,-0.3 0.921 110.4 51.9 -66.5 -42.2 -23.7 1.7 -17.0 90 7 T L H X S+ 0 0 37 -4,-2.4 4,-1.6 1,-0.2 -2,-0.2 0.897 113.0 44.7 -59.6 -42.3 -27.1 3.2 -17.9 91 8 T D H < S+ 0 0 123 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.875 113.4 51.2 -66.8 -40.2 -28.5 -0.4 -18.3 92 9 T Y H < S+ 0 0 94 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.932 124.1 25.6 -67.8 -45.0 -26.8 -1.7 -15.2 93 10 T Y H < S+ 0 0 65 -4,-2.6 -1,-0.2 -5,-0.1 -2,-0.2 0.589 126.7 9.0 -96.7 -12.4 -28.1 1.1 -12.8 94 11 T G < 0 0 29 -4,-1.6 -3,-0.1 1,-0.4 -4,-0.0 0.217 360.0 360.0 -92.9-148.3 -31.3 2.0 -14.8 95 12 T P 0 0 185 0, 0.0 -1,-0.4 0, 0.0 -2,-0.1 -0.546 360.0 360.0 -25.4 360.0 -33.6 1.9 -17.0