==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 11-JUL-08 3DS1 . COMPND 2 MOLECULE: HIV-1 CAPSID PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR M.-C.VANEY,S.IGONET,F.A.REY . 92 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5963.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 62.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 46.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 1 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T 0 0 157 0, 0.0 2,-0.4 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 178.2 5.0 3.8 32.4 2 149 A S > - 0 0 26 1,-0.1 3,-1.9 26,-0.1 4,-0.2 -0.988 360.0-127.1-130.1 145.6 6.6 5.4 35.5 3 150 A I G > S+ 0 0 0 -2,-0.4 3,-1.4 1,-0.3 22,-0.1 0.792 111.3 67.0 -56.6 -27.0 6.5 9.0 36.6 4 151 A L G 3 S+ 0 0 109 1,-0.3 -1,-0.3 -3,-0.0 0, 0.0 0.725 94.5 58.2 -67.8 -20.4 10.3 8.7 36.8 5 152 A D G < S+ 0 0 106 -3,-1.9 2,-0.6 2,-0.0 -1,-0.3 0.450 81.9 101.7 -86.7 -5.9 10.3 8.3 33.0 6 153 A I < + 0 0 11 -3,-1.4 2,-0.3 -4,-0.2 40,-0.1 -0.731 43.8 156.5 -90.7 118.2 8.6 11.7 32.3 7 154 A R - 0 0 144 -2,-0.6 40,-0.2 38,-0.0 2,-0.1 -0.998 45.2 -99.7-141.4 146.9 10.9 14.4 31.2 8 155 A Q - 0 0 11 38,-2.4 6,-0.1 -2,-0.3 -2,-0.0 -0.401 40.2-116.4 -67.0 132.5 10.5 17.6 29.2 9 156 A G > - 0 0 20 4,-0.1 3,-0.5 -2,-0.1 39,-0.2 -0.272 31.6-104.2 -60.6 156.7 11.4 17.4 25.5 10 157 A P T 3 S+ 0 0 119 0, 0.0 40,-0.2 0, 0.0 -1,-0.1 0.807 120.1 15.3 -56.1 -34.6 14.3 19.7 24.5 11 158 A K T 3 S+ 0 0 146 2,-0.1 3,-0.1 37,-0.0 -2,-0.0 0.260 95.4 132.6-121.6 11.1 11.9 22.1 22.8 12 159 A E < - 0 0 31 -3,-0.5 36,-0.2 1,-0.1 64,-0.1 -0.393 65.2-107.1 -69.9 133.9 8.6 20.9 24.4 13 160 A P >> - 0 0 47 0, 0.0 4,-2.0 0, 0.0 3,-0.9 -0.327 23.3-128.5 -54.9 133.5 6.3 23.7 25.8 14 161 A F H 3> S+ 0 0 4 57,-0.4 4,-2.8 60,-0.3 5,-0.2 0.900 109.8 59.1 -51.4 -42.4 6.4 23.6 29.6 15 162 A R H 3> S+ 0 0 160 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.854 105.6 48.5 -56.6 -34.5 2.6 23.5 29.5 16 163 A D H <> S+ 0 0 70 -3,-0.9 4,-2.2 2,-0.2 -1,-0.2 0.923 110.8 50.0 -72.4 -42.0 2.7 20.2 27.5 17 164 A Y H X S+ 0 0 0 -4,-2.0 4,-2.8 1,-0.2 -2,-0.2 0.916 108.7 51.8 -64.2 -42.9 5.2 18.6 29.8 18 165 A V H X S+ 0 0 0 -4,-2.8 4,-3.0 1,-0.2 -1,-0.2 0.931 108.6 52.4 -59.9 -42.4 3.2 19.4 32.9 19 166 A D H X S+ 0 0 51 -4,-1.6 4,-2.5 -5,-0.2 -2,-0.2 0.932 111.9 45.0 -58.5 -46.2 0.2 17.9 31.3 20 167 A R H X S+ 0 0 90 -4,-2.2 4,-2.3 2,-0.2 5,-0.2 0.904 112.5 51.5 -65.5 -40.5 2.1 14.6 30.6 21 168 A F H X S+ 0 0 0 -4,-2.8 4,-2.5 2,-0.2 -2,-0.2 0.937 111.3 48.0 -61.9 -47.8 3.6 14.6 34.1 22 169 A Y H X S+ 0 0 12 -4,-3.0 4,-2.5 2,-0.2 -2,-0.2 0.940 110.5 51.0 -58.2 -47.9 0.1 15.0 35.6 23 170 A K H X S+ 0 0 103 -4,-2.5 4,-1.0 1,-0.2 -1,-0.2 0.910 114.7 42.9 -60.3 -41.4 -1.4 12.2 33.4 24 171 A T H X S+ 0 0 30 -4,-2.3 4,-1.1 1,-0.2 3,-0.3 0.883 112.4 52.7 -70.6 -39.2 1.3 9.8 34.4 25 172 A L H < S+ 0 0 0 -4,-2.5 3,-0.4 1,-0.2 -2,-0.2 0.876 101.8 60.1 -70.1 -32.6 1.4 10.7 38.0 26 173 A R H < S+ 0 0 127 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.883 110.5 42.2 -56.9 -39.8 -2.4 10.1 38.3 27 174 A A H < S+ 0 0 81 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.2 0.642 89.5 111.4 -82.6 -17.7 -1.8 6.5 37.2 28 175 A E S < S- 0 0 43 -4,-1.1 2,-1.2 -3,-0.4 -26,-0.1 -0.316 71.1-127.8 -61.0 135.6 1.3 6.0 39.4 29 176 A Q + 0 0 194 6,-0.0 2,-0.3 -2,-0.0 -1,-0.1 -0.746 65.0 110.9 -90.4 92.9 0.7 3.5 42.3 30 177 A A S S- 0 0 38 -2,-1.2 2,-0.0 -5,-0.1 5,-0.0 -0.951 71.8 -83.0-153.8 163.4 2.0 5.5 45.3 31 178 A S > - 0 0 59 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.313 40.1-114.1 -67.5 153.6 0.5 7.2 48.4 32 179 A Q H > S+ 0 0 117 2,-0.2 4,-2.2 1,-0.2 53,-0.2 0.906 119.9 53.9 -51.4 -43.8 -1.0 10.7 48.1 33 180 A E H > S+ 0 0 156 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.909 109.4 47.0 -59.0 -46.4 1.8 12.0 50.3 34 181 A V H > S+ 0 0 48 1,-0.2 4,-3.1 2,-0.2 -1,-0.2 0.894 108.3 55.1 -63.6 -40.0 4.4 10.4 48.0 35 182 A K H X S+ 0 0 25 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.877 107.3 51.5 -63.6 -35.8 2.6 11.9 44.9 36 183 A N H X S+ 0 0 26 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.918 111.0 47.0 -62.5 -43.1 2.9 15.3 46.5 37 184 A W H X S+ 0 0 163 -4,-1.8 4,-1.3 1,-0.2 5,-0.3 0.923 110.2 53.2 -66.1 -43.6 6.6 14.8 47.1 38 185 A M H X>S+ 0 0 22 -4,-3.1 4,-2.2 1,-0.2 5,-0.7 0.900 111.9 45.5 -56.2 -42.6 7.0 13.5 43.5 39 186 A T H X5S+ 0 0 2 -4,-2.1 4,-0.8 1,-0.2 5,-0.4 0.929 111.3 52.9 -68.2 -40.9 5.4 16.7 42.2 40 187 A A H <5S+ 0 0 56 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.650 125.9 21.0 -69.6 -19.3 7.4 18.9 44.5 41 188 A T H X5S+ 0 0 47 -4,-1.3 4,-1.9 -3,-0.3 -2,-0.2 0.779 122.5 44.6-113.3 -50.8 10.7 17.4 43.3 42 189 A L H X5S+ 0 0 21 -4,-2.2 4,-2.6 -5,-0.3 -3,-0.2 0.772 100.6 65.1 -75.6 -30.7 10.5 15.7 39.9 43 190 A L H <4 S+ 0 0 23 -5,-0.4 3,-1.4 1,-0.2 -2,-0.2 0.908 118.3 57.9 -71.6 -40.8 11.2 20.9 38.3 45 192 A Q H 3< S+ 0 0 100 -4,-1.9 -2,-0.2 1,-0.3 -1,-0.2 0.879 111.0 40.8 -57.4 -41.4 14.0 18.3 38.3 46 193 A N T 3< S+ 0 0 16 -4,-2.6 -38,-2.4 -5,-0.1 -1,-0.3 0.288 88.0 113.3 -98.5 11.4 13.0 16.8 35.0 47 194 A A S < S- 0 0 6 -3,-1.4 -3,-0.0 -40,-0.2 -33,-0.0 -0.368 80.7 -93.1 -67.4 158.4 12.2 20.0 33.2 48 195 A N > - 0 0 9 -39,-0.2 4,-2.9 -36,-0.2 3,-0.3 -0.275 44.4 -96.6 -70.6 162.2 14.6 20.9 30.3 49 196 A P H > S+ 0 0 101 0, 0.0 4,-2.1 0, 0.0 5,-0.1 0.876 121.2 48.9 -50.0 -43.0 17.6 23.0 31.2 50 197 A D H > S+ 0 0 105 1,-0.2 4,-1.2 2,-0.2 5,-0.1 0.877 117.0 40.1 -69.3 -38.9 16.1 26.4 30.1 51 198 A C H > S+ 0 0 0 -3,-0.3 4,-2.8 2,-0.2 -1,-0.2 0.876 110.6 59.6 -72.1 -37.7 12.8 25.9 32.0 52 199 A K H X S+ 0 0 71 -4,-2.9 4,-2.5 1,-0.2 5,-0.3 0.924 103.3 52.1 -59.7 -45.1 14.6 24.4 35.0 53 200 A T H X S+ 0 0 102 -4,-2.1 4,-1.8 -5,-0.3 -1,-0.2 0.944 112.1 45.2 -52.9 -51.7 16.6 27.6 35.3 54 201 A I H X S+ 0 0 47 -4,-1.2 4,-2.0 1,-0.2 -2,-0.2 0.899 112.5 51.4 -59.6 -43.0 13.4 29.7 35.3 55 202 A L H X S+ 0 0 3 -4,-2.8 4,-1.1 1,-0.2 -1,-0.2 0.908 108.9 49.1 -68.2 -42.4 11.6 27.4 37.8 56 203 A K H < S+ 0 0 145 -4,-2.5 3,-0.4 1,-0.2 -1,-0.2 0.881 109.6 54.1 -60.2 -39.1 14.4 27.4 40.3 57 204 A A H < S+ 0 0 85 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.907 101.7 57.7 -63.8 -41.6 14.6 31.2 40.1 58 205 A L H < S- 0 0 74 -4,-2.0 -1,-0.2 1,-0.1 3,-0.2 0.776 105.7-140.3 -61.2 -31.6 10.8 31.5 40.9 59 206 A G >< - 0 0 21 -4,-1.1 3,-1.5 -3,-0.4 -1,-0.1 -0.066 25.2 -64.2 92.7 170.4 11.3 29.7 44.2 60 207 A P T 3 S+ 0 0 137 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.674 124.0 62.3 -73.2 -17.9 9.4 27.1 46.1 61 208 A G T 3 S+ 0 0 71 -3,-0.2 -2,-0.1 2,-0.0 -3,-0.0 0.427 77.4 120.8 -87.6 -0.6 6.4 29.3 46.8 62 209 A A < - 0 0 10 -3,-1.5 2,-0.2 -7,-0.2 -3,-0.1 -0.299 57.7-133.1 -62.4 144.0 5.5 29.6 43.1 63 210 A T > - 0 0 63 1,-0.1 4,-2.2 20,-0.1 5,-0.2 -0.564 23.7-111.2 -89.1 163.3 2.1 28.5 41.9 64 211 A L H > S+ 0 0 8 2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.925 121.0 54.7 -57.4 -45.6 1.6 26.3 38.8 65 212 A E H > S+ 0 0 141 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.921 108.9 48.2 -53.0 -45.3 -0.0 29.4 37.1 66 213 A E H > S+ 0 0 100 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.893 111.2 49.8 -65.3 -39.2 3.1 31.4 37.8 67 214 A M H X S+ 0 0 8 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.907 110.1 50.9 -63.5 -44.0 5.4 28.6 36.5 68 215 A M H X S+ 0 0 25 -4,-2.8 4,-0.7 1,-0.2 3,-0.4 0.950 111.5 48.0 -58.3 -50.5 3.3 28.4 33.3 69 216 A T H >< S+ 0 0 94 -4,-2.6 3,-1.0 1,-0.2 -2,-0.2 0.919 111.6 49.4 -57.8 -46.1 3.6 32.1 32.8 70 217 A A H 3< S+ 0 0 35 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.760 113.9 45.0 -66.7 -29.0 7.4 32.2 33.4 71 218 A C H >< S+ 0 0 3 -4,-1.7 3,-1.8 -3,-0.4 -57,-0.4 0.424 79.7 129.3 -96.7 -1.5 8.1 29.4 31.0 72 219 A Q T << S+ 0 0 163 -3,-1.0 3,-0.1 -4,-0.7 -3,-0.0 -0.337 80.2 10.3 -55.4 125.8 5.9 30.6 28.2 73 220 A G T > S+ 0 0 51 1,-0.3 3,-1.5 4,-0.1 2,-0.5 0.316 85.8 138.4 87.9 -9.5 7.9 30.7 24.9 74 221 A V T < S+ 0 0 29 -3,-1.8 -60,-0.3 1,-0.3 -1,-0.3 -0.614 84.8 9.7 -69.4 117.7 10.9 28.8 26.2 75 222 A G T 3 S+ 0 0 20 -2,-0.5 -1,-0.3 1,-0.3 3,-0.2 0.143 135.6 29.9 99.1 -14.7 11.8 26.5 23.4 76 223 A G < - 0 0 34 -3,-1.5 -1,-0.3 1,-0.2 -64,-0.0 0.291 23.5-177.2 -99.3-149.2 9.3 28.3 21.3 77 224 A P - 0 0 129 0, 0.0 -1,-0.2 0, 0.0 -4,-0.1 -0.996 50.1-167.0 -73.7 -11.6 7.7 30.4 20.2 78 225 A G + 0 0 76 1,-0.2 2,-0.2 -3,-0.2 -2,-0.1 0.705 30.2 145.0 73.7 21.8 6.5 27.4 18.0 79 226 A H - 0 0 166 1,-0.1 -1,-0.2 0, 0.0 2,-0.2 -0.636 60.9 -92.7 -86.6 149.3 4.6 29.4 15.4 80 227 A K 0 0 181 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 -0.454 360.0 360.0 -62.4 130.8 4.7 28.2 11.7 81 228 A A 0 0 140 -2,-0.2 -1,-0.1 -3,-0.0 0, 0.0 -0.459 360.0 360.0 -59.0 360.0 7.5 29.9 9.8 82 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 83 1 T I 0 0 26 0, 0.0 2,-0.2 0, 0.0 -40,-0.1 0.000 360.0 360.0 360.0 165.0 3.9 22.6 43.9 84 2 T T > - 0 0 46 -45,-0.1 4,-1.3 -44,-0.1 3,-0.5 -0.624 360.0-104.9-115.4 171.0 2.1 19.5 45.0 85 3 T F H > S+ 0 0 15 1,-0.2 4,-2.7 -53,-0.2 5,-0.2 0.878 121.1 62.1 -63.4 -36.5 -0.0 16.9 43.3 86 4 T E H > S+ 0 0 85 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.843 99.6 53.6 -55.8 -37.2 -3.1 18.6 44.8 87 5 T D H > S+ 0 0 62 -3,-0.5 4,-2.1 2,-0.2 -1,-0.2 0.877 108.8 49.6 -64.6 -39.5 -2.2 21.7 42.8 88 6 T L H X S+ 0 0 0 -4,-1.3 4,-2.7 2,-0.2 5,-0.4 0.945 110.1 50.1 -65.1 -45.6 -2.2 19.6 39.7 89 7 T L H X S+ 0 0 67 -4,-2.7 4,-1.9 1,-0.2 -2,-0.2 0.885 113.3 46.4 -58.2 -41.2 -5.6 18.1 40.6 90 8 T D H < S+ 0 0 129 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.859 113.6 49.2 -66.9 -38.4 -7.0 21.6 41.1 91 9 T Y H < S+ 0 0 113 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.937 123.1 28.6 -71.2 -48.6 -5.5 23.0 37.9 92 10 T Y H < 0 0 63 -4,-2.7 -2,-0.2 -5,-0.1 -1,-0.2 0.682 360.0 360.0 -89.2 -21.0 -6.7 20.2 35.6 93 11 T G < 0 0 93 -4,-1.9 -3,-0.1 -5,-0.4 -4,-0.0 0.225 360.0 360.0 -81.9 360.0 -9.8 19.3 37.5