==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER IMMUNE SYSTEM 11-JAN-00 1DT4 . COMPND 2 MOLECULE: NEURO-ONCOLOGICAL VENTRAL ANTIGEN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.A.LEWIS,H.CHEN,C.EDO,R.J.BUCKANOVICH,Y.Y.L.YANG . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4275.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 72.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 19.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 23 31.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 4 A M 0 0 203 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-134.9 9.1 53.7 7.9 2 5 A K + 0 0 65 56,-0.2 2,-0.2 57,-0.1 56,-0.2 -0.998 360.0 175.3-155.2 148.8 7.9 50.6 9.9 3 6 A D E -A 57 0A 62 54,-2.8 54,-1.8 -2,-0.3 2,-0.4 -0.780 23.6-120.7-139.2-175.8 4.8 48.9 11.2 4 7 A V E -A 56 0A 81 -2,-0.2 2,-0.4 52,-0.2 52,-0.2 -1.000 13.9-163.0-138.0 134.6 3.8 45.7 13.0 5 8 A V E -A 55 0A 38 50,-3.2 50,-2.9 -2,-0.4 2,-0.5 -0.963 7.7-160.1-119.2 131.8 1.4 43.0 12.0 6 9 A E E -A 54 0A 145 -2,-0.4 2,-0.4 48,-0.2 48,-0.2 -0.944 7.1-172.9-116.6 131.6 -0.1 40.5 14.5 7 10 A I E -A 53 0A 43 46,-2.9 46,-3.3 -2,-0.5 2,-0.5 -0.981 17.5-140.8-126.2 135.5 -1.5 37.2 13.5 8 11 A A E +A 52 0A 52 -2,-0.4 44,-0.2 44,-0.2 43,-0.1 -0.825 25.2 177.3 -94.5 125.0 -3.3 34.7 15.7 9 12 A V E -A 51 0A 6 42,-2.3 42,-2.3 -2,-0.5 5,-0.1 -0.972 31.1-113.8-134.2 120.7 -2.4 31.1 14.9 10 13 A P E >> -A 50 0A 36 0, 0.0 3,-2.4 0, 0.0 4,-1.6 -0.171 25.5-119.7 -53.0 138.4 -3.8 28.0 16.8 11 14 A E T 34 S+ 0 0 60 38,-1.7 4,-0.4 1,-0.3 39,-0.1 0.788 111.4 58.6 -46.0 -41.4 -1.3 26.1 18.9 12 15 A N T 34 S+ 0 0 138 1,-0.2 -1,-0.3 2,-0.1 38,-0.1 0.520 112.8 40.4 -72.7 -6.0 -1.9 22.9 16.9 13 16 A L T X4 S+ 0 0 64 -3,-2.4 3,-3.3 2,-0.1 4,-0.3 0.634 86.4 93.3-110.5 -29.2 -0.8 24.6 13.7 14 17 A V T >X S+ 0 0 1 -4,-1.6 3,-2.1 1,-0.3 4,-1.4 0.747 73.9 69.2 -38.6 -36.6 2.1 26.7 14.9 15 18 A G H 3> S+ 0 0 54 -4,-0.4 4,-1.5 1,-0.3 -1,-0.3 0.769 88.3 65.9 -58.2 -23.8 4.6 24.0 14.0 16 19 A A H <4 S+ 0 0 45 -3,-3.3 -1,-0.3 1,-0.2 -2,-0.2 0.646 104.2 45.6 -70.9 -16.8 3.8 24.7 10.3 17 20 A I H <4 S+ 0 0 2 -3,-2.1 8,-0.4 -4,-0.3 -2,-0.2 0.858 110.1 49.3 -92.2 -48.3 5.4 28.2 10.7 18 21 A L H < S- 0 0 50 -4,-1.4 7,-2.3 6,-0.2 6,-0.9 0.980 84.4-176.3 -57.1 -62.7 8.6 27.4 12.6 19 22 A G >< + 0 0 28 -4,-1.5 2,-2.1 5,-0.2 3,-0.8 -0.647 57.7 14.9 95.9-156.5 9.8 24.6 10.4 20 23 A K G > S- 0 0 88 1,-0.3 3,-1.4 -2,-0.2 -1,-0.0 -0.268 140.3 -49.0 -54.6 80.9 12.9 22.5 11.0 21 24 A G G 3 S- 0 0 87 -2,-2.1 -1,-0.3 1,-0.3 -2,-0.1 0.878 126.2 -29.8 52.2 40.6 13.1 23.6 14.6 22 25 A G G <> S+ 0 0 15 -3,-0.8 4,-2.4 -7,-0.2 -1,-0.3 0.223 106.1 125.5 105.1 -12.7 12.8 27.2 13.5 23 26 A K H <> S+ 0 0 49 -3,-1.4 4,-2.3 1,-0.2 -4,-0.2 0.869 78.1 40.3 -43.3 -54.7 14.3 26.7 10.0 24 27 A T H > S+ 0 0 33 -6,-0.9 4,-2.9 2,-0.2 5,-0.3 0.971 113.8 50.1 -61.1 -61.2 11.4 28.2 8.1 25 28 A L H > S+ 0 0 26 -7,-2.3 4,-0.9 -8,-0.4 -1,-0.2 0.810 114.8 49.7 -48.6 -32.5 10.5 31.0 10.5 26 29 A V H X S+ 0 0 68 -4,-2.4 4,-2.3 -8,-0.5 -1,-0.3 0.900 109.2 49.3 -75.3 -42.9 14.2 31.8 10.2 27 30 A E H X S+ 0 0 94 -4,-2.3 4,-2.9 -5,-0.2 5,-0.2 0.962 108.6 52.5 -60.7 -52.2 14.3 31.7 6.4 28 31 A Y H X S+ 0 0 30 -4,-2.9 4,-2.2 1,-0.3 6,-0.4 0.828 109.8 50.3 -54.3 -33.8 11.3 34.0 6.0 29 32 A Q H X S+ 0 0 62 -4,-0.9 4,-1.9 -5,-0.3 5,-0.5 0.932 110.2 50.0 -69.9 -44.2 13.1 36.4 8.3 30 33 A E H < S+ 0 0 146 -4,-2.3 -2,-0.2 2,-0.2 -1,-0.2 0.936 119.6 36.2 -57.4 -49.6 16.2 36.2 6.1 31 34 A L H < S+ 0 0 118 -4,-2.9 -2,-0.2 1,-0.2 -3,-0.2 0.971 124.2 36.8 -69.1 -60.5 14.2 36.8 2.9 32 35 A T H < S- 0 0 24 -4,-2.2 -3,-0.2 -5,-0.2 -2,-0.2 0.764 99.5-133.0 -67.2 -25.2 11.6 39.3 3.9 33 36 A G < + 0 0 60 -4,-1.9 2,-0.4 -5,-0.4 25,-0.2 0.834 60.2 134.7 74.1 32.2 14.0 41.0 6.2 34 37 A C - 0 0 4 -5,-0.5 2,-0.9 -6,-0.4 -1,-0.3 -0.906 62.2-123.6-116.2 143.8 11.4 41.0 9.0 35 38 A R E -B 56 0A 46 21,-1.5 21,-1.3 -2,-0.4 2,-0.4 -0.757 35.5-168.6 -84.1 110.0 11.9 40.1 12.6 36 39 A I E +B 55 0A 4 -2,-0.9 2,-0.3 -11,-0.2 19,-0.2 -0.865 11.7 168.1-103.2 136.8 9.2 37.5 13.0 37 40 A Q E -B 54 0A 128 17,-1.8 17,-3.2 -2,-0.4 2,-0.3 -0.956 20.6-147.3-143.5 161.9 8.4 36.3 16.5 38 41 A I E -B 53 0A 51 -2,-0.3 15,-0.2 15,-0.3 3,-0.1 -0.968 29.8 -98.3-133.2 148.7 5.7 34.3 18.3 39 42 A S - 0 0 24 13,-2.3 12,-0.1 -2,-0.3 14,-0.0 -0.202 57.6 -76.9 -62.6 153.3 4.2 34.5 21.8 40 43 A K > - 0 0 76 1,-0.1 3,-3.9 2,-0.1 -1,-0.1 -0.195 52.0-100.7 -52.3 139.0 5.4 32.3 24.6 41 44 A K T 3 S+ 0 0 131 1,-0.3 -1,-0.1 -3,-0.1 -2,-0.1 0.735 122.0 46.4 -28.7 -47.4 4.2 28.6 24.4 42 45 A G T 3 S+ 0 0 66 1,-0.0 2,-0.7 2,-0.0 -1,-0.3 0.483 90.9 99.7 -84.2 -1.0 1.5 29.2 27.0 43 46 A E < + 0 0 107 -3,-3.9 9,-0.4 9,-0.1 2,-0.2 -0.783 40.5 158.7 -99.4 116.5 0.2 32.5 25.7 44 47 A F - 0 0 60 -2,-0.7 7,-0.2 7,-0.2 5,-0.1 -0.618 49.4 -81.5-116.6 173.9 -3.0 32.5 23.6 45 48 A L > - 0 0 64 5,-1.1 3,-2.1 -2,-0.2 5,-0.2 -0.542 59.9 -89.7 -76.9 148.9 -5.5 35.3 22.8 46 49 A P T 3 S+ 0 0 128 0, 0.0 2,-0.5 0, 0.0 -2,-0.1 0.745 117.9 18.7 -20.8 -85.3 -8.1 35.9 25.6 47 50 A G T 3 S+ 0 0 76 2,-0.0 2,-0.2 -3,-0.0 -2,-0.0 -0.167 121.8 57.6 -93.5 44.7 -11.0 33.6 24.7 48 51 A T S < S- 0 0 69 -3,-2.1 -4,-0.1 -2,-0.5 0, 0.0 -0.813 77.9-117.0-149.9-171.9 -9.1 31.2 22.3 49 52 A R + 0 0 55 -2,-0.2 -38,-1.7 -5,-0.1 2,-0.4 0.083 68.6 124.7-123.2 20.2 -6.2 28.8 22.0 50 53 A N E -A 10 0A 44 -40,-0.2 -5,-1.1 -5,-0.2 -2,-0.1 -0.713 52.0-142.7 -89.3 126.8 -4.3 30.8 19.3 51 54 A R E -A 9 0A 10 -42,-2.3 -42,-2.3 -2,-0.4 2,-0.5 -0.247 25.5-115.6 -73.2 172.4 -0.7 31.9 19.9 52 55 A K E -A 8 0A 24 -9,-0.4 -13,-2.3 -44,-0.2 2,-0.5 -0.953 22.7-163.7-120.7 121.7 0.3 35.3 18.6 53 56 A V E -AB 7 38A 2 -46,-3.3 -46,-2.9 -2,-0.5 2,-0.5 -0.857 8.7-160.2-102.2 134.2 2.9 35.9 15.8 54 57 A T E -AB 6 37A 32 -17,-3.2 -17,-1.8 -2,-0.5 2,-0.5 -0.960 8.1-172.8-124.0 121.6 4.3 39.3 15.4 55 58 A I E -AB 5 36A 0 -50,-2.9 -50,-3.2 -2,-0.5 2,-0.4 -0.924 8.9-178.7-109.8 128.8 6.0 40.6 12.2 56 59 A T E +AB 4 35A 51 -21,-1.3 -21,-1.5 -2,-0.5 2,-0.3 -0.994 31.7 75.8-134.9 131.7 7.6 44.0 12.3 57 60 A G E S-A 3 0A 18 -54,-1.8 -54,-2.8 -2,-0.4 -23,-0.1 -0.959 81.5 -4.4 168.9-154.8 9.4 45.8 9.5 58 61 A T > - 0 0 74 -2,-0.3 4,-3.0 -56,-0.2 5,-0.3 -0.275 66.7-118.1 -60.4 149.5 8.7 47.8 6.3 59 62 A P H > S+ 0 0 59 0, 0.0 4,-1.0 0, 0.0 -1,-0.1 0.894 118.6 45.5 -58.4 -35.7 5.0 47.9 5.5 60 63 A A H > S+ 0 0 70 2,-0.2 4,-2.2 1,-0.2 5,-0.1 0.866 112.5 48.3 -74.4 -39.5 5.9 46.1 2.3 61 64 A A H > S+ 0 0 21 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.877 111.3 50.6 -70.1 -36.1 8.2 43.6 3.9 62 65 A T H X S+ 0 0 3 -4,-3.0 4,-1.9 2,-0.2 -1,-0.2 0.786 108.6 54.5 -71.7 -24.5 5.5 42.8 6.6 63 66 A Q H X S+ 0 0 120 -4,-1.0 4,-2.6 -5,-0.3 -2,-0.2 0.980 112.7 40.6 -69.0 -57.4 3.0 42.3 3.8 64 67 A A H X S+ 0 0 47 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.973 117.3 47.5 -53.5 -63.4 5.1 39.8 2.0 65 68 A A H X S+ 0 0 0 -4,-2.5 4,-3.1 1,-0.2 5,-0.3 0.895 109.3 55.3 -44.4 -51.2 6.3 38.0 5.2 66 69 A Q H X S+ 0 0 45 -4,-1.9 4,-2.8 -5,-0.2 5,-0.3 0.962 109.0 47.9 -46.4 -61.2 2.7 37.9 6.4 67 70 A Y H X S+ 0 0 133 -4,-2.6 4,-2.1 1,-0.2 -1,-0.2 0.867 111.6 48.8 -47.1 -51.1 1.7 36.2 3.1 68 71 A L H X S+ 0 0 41 -4,-2.3 4,-1.3 2,-0.2 3,-0.3 0.961 112.6 48.0 -56.7 -53.4 4.6 33.6 3.3 69 72 A I H >X S+ 0 0 2 -4,-3.1 4,-0.8 1,-0.2 3,-0.6 0.939 114.9 45.8 -50.5 -52.9 3.7 32.8 6.9 70 73 A T H 3< S+ 0 0 61 -4,-2.8 -1,-0.2 -5,-0.3 -2,-0.2 0.746 100.0 68.8 -63.1 -30.7 -0.0 32.4 6.1 71 74 A Q H 3< S+ 0 0 120 -4,-2.1 -1,-0.2 -3,-0.3 -2,-0.2 0.922 98.3 52.0 -55.2 -46.8 0.7 30.3 3.0 72 75 A R H << 0 0 48 -4,-1.3 -1,-0.2 -3,-0.6 -2,-0.2 0.832 360.0 360.0 -61.2 -40.1 1.9 27.4 5.2 73 76 A I < 0 0 88 -4,-0.8 -1,-0.2 -3,-0.1 -3,-0.1 -0.296 360.0 360.0 -66.7 360.0 -1.3 27.4 7.4