==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 13-JAN-00 1DU2 . COMPND 2 MOLECULE: DNA POLYMERASE III; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.A.KENIRY,H.A.BERTHON,J.-Y.YANG,C.S.MILES,N.E.DIXON . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7456.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 33 43.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 232 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -51.9 30.3 -18.0 11.9 2 2 A L + 0 0 143 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.323 360.0 86.9-168.1 71.5 27.9 -15.9 9.9 3 3 A K + 0 0 184 2,-0.0 2,-0.3 0, 0.0 4,-0.0 -0.972 35.7 172.6-164.5 164.3 24.5 -15.4 11.5 4 4 A N - 0 0 143 -2,-0.3 0, 0.0 2,-0.0 0, 0.0 -0.906 41.2 -80.8-176.3 150.1 22.6 -13.3 13.9 5 5 A L S S+ 0 0 153 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 0.007 98.9 50.3 -51.7 164.4 19.2 -12.7 15.3 6 6 A A - 0 0 91 2,-0.1 3,-0.1 3,-0.0 4,-0.0 0.951 57.7-172.6 63.9 93.3 16.8 -10.6 13.2 7 7 A K - 0 0 183 1,-0.1 2,-0.1 -4,-0.0 -2,-0.0 0.904 65.0 -51.4 -80.4 -46.2 16.8 -12.0 9.7 8 8 A L S S+ 0 0 118 1,-0.0 -1,-0.1 2,-0.0 -2,-0.1 -0.313 83.7 121.5 163.7 107.3 14.7 -9.2 8.2 9 9 A D + 0 0 110 -2,-0.1 -1,-0.0 -3,-0.1 46,-0.0 -0.049 40.2 107.3-172.6 49.0 11.4 -7.9 9.3 10 10 A Q >> + 0 0 139 2,-0.1 3,-2.5 1,-0.1 4,-0.6 0.613 59.0 83.0-105.6 -21.7 11.7 -4.2 10.1 11 11 A T H >> S+ 0 0 77 1,-0.3 4,-1.1 2,-0.2 3,-0.9 0.777 83.9 65.2 -52.9 -27.8 9.8 -2.9 7.0 12 12 A E H 3> S+ 0 0 101 1,-0.3 4,-4.4 2,-0.2 -1,-0.3 0.785 87.7 68.4 -65.9 -28.1 6.7 -3.6 9.1 13 13 A M H <4 S+ 0 0 112 -3,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.818 104.9 41.3 -60.0 -32.4 7.9 -0.8 11.4 14 14 A D H > S+ 0 0 103 -5,-0.2 3,-2.1 2,-0.2 4,-0.5 0.951 112.8 36.8 -84.0 -63.5 3.0 3.5 11.1 18 18 A V H 3X S+ 0 0 42 -4,-1.5 4,-1.4 1,-0.3 3,-0.2 0.645 98.3 87.0 -63.8 -13.7 0.9 4.2 8.0 19 19 A D H 3< S+ 0 0 59 -4,-2.0 -1,-0.3 1,-0.3 -2,-0.2 0.796 91.8 45.0 -55.5 -29.0 -1.2 1.3 9.3 20 20 A L H <4 S+ 0 0 166 -3,-2.1 -1,-0.3 -4,-0.2 -2,-0.2 0.748 106.3 63.9 -84.9 -27.6 -3.0 4.0 11.2 21 21 A A H < S- 0 0 80 -4,-0.5 2,-0.3 -3,-0.2 -2,-0.2 0.990 118.5 -4.1 -57.3 -78.8 -3.1 6.3 8.2 22 22 A A < - 0 0 30 -4,-1.4 -1,-0.2 1,-0.1 0, 0.0 -0.761 49.6-150.9-116.8 163.5 -5.3 4.2 5.9 23 23 A A S S- 0 0 28 -2,-0.3 25,-0.3 -3,-0.1 -1,-0.1 0.359 70.7 -78.7-111.1 -1.3 -6.8 0.7 6.2 24 24 A G S S+ 0 0 0 21,-0.2 22,-0.6 22,-0.2 20,-0.1 0.779 106.6 97.7 104.3 42.6 -6.8 0.1 2.4 25 25 A V S > S+ 0 0 21 20,-0.1 3,-0.7 2,-0.1 8,-0.1 0.638 79.2 40.1-117.6 -79.0 -9.8 2.1 1.3 26 26 A A T 3 S+ 0 0 71 1,-0.3 39,-0.5 2,-0.1 40,-0.5 0.813 111.6 66.7 -44.2 -33.9 -9.0 5.5 -0.1 27 27 A F T 3 S- 0 0 88 1,-0.2 38,-0.7 38,-0.1 37,-0.7 0.960 128.1 -42.0 -52.4 -60.8 -6.1 3.8 -1.7 28 28 A K < - 0 0 47 -3,-0.7 -1,-0.2 36,-0.2 3,-0.2 -0.678 43.2-124.8-177.4 118.1 -8.2 1.7 -4.0 29 29 A E - 0 0 58 1,-0.2 2,-3.3 -2,-0.2 15,-0.2 0.783 39.8-172.9 -33.8 -37.1 -11.4 -0.2 -3.4 30 30 A R S S+ 0 0 115 1,-0.2 -1,-0.2 2,-0.1 -5,-0.1 -0.326 81.9 27.6 72.0 -61.3 -9.4 -3.2 -4.7 31 31 A Y S S- 0 0 59 -2,-3.3 -1,-0.2 13,-0.2 -2,-0.1 0.020 127.5 -91.5-117.2 23.8 -12.5 -5.3 -4.7 32 32 A N - 0 0 128 1,-0.1 -2,-0.1 2,-0.0 -3,-0.0 0.992 56.4-160.1 63.7 64.1 -15.0 -2.5 -5.2 33 33 A M - 0 0 31 1,-0.1 -1,-0.1 -8,-0.1 -4,-0.1 -0.481 11.0-120.6 -77.8 146.9 -15.7 -1.8 -1.6 34 34 A P - 0 0 75 0, 0.0 2,-4.2 0, 0.0 5,-0.1 -0.027 53.1 -63.7 -75.0-176.4 -18.8 0.1 -0.6 35 35 A V S S+ 0 0 155 4,-0.0 2,-0.3 2,-0.0 -2,-0.0 -0.243 110.3 93.3 -67.5 57.0 -19.0 3.3 1.3 36 36 A I - 0 0 94 -2,-4.2 -3,-0.0 1,-0.1 4,-0.0 -0.979 55.1-166.1-149.1 156.1 -17.4 1.5 4.2 37 37 A A S >> S+ 0 0 52 -2,-0.3 4,-1.3 2,-0.1 3,-0.5 0.657 89.1 66.0-112.4 -32.0 -13.9 0.9 5.6 38 38 A E H 3> S+ 0 0 156 1,-0.3 4,-0.8 2,-0.2 -1,-0.0 0.631 105.4 49.0 -66.1 -13.2 -14.7 -1.9 8.1 39 39 A A H 3> S+ 0 0 19 2,-0.2 4,-2.0 3,-0.2 5,-0.4 0.659 99.4 64.7 -97.0 -22.9 -15.5 -3.9 5.0 40 40 A V H <> S+ 0 0 0 -3,-0.5 4,-0.8 2,-0.2 -2,-0.2 0.833 113.0 34.7 -67.9 -33.4 -12.3 -2.9 3.2 41 41 A E H < S+ 0 0 108 -4,-1.3 -2,-0.2 2,-0.2 -1,-0.2 0.827 116.1 54.0 -87.7 -37.9 -10.4 -4.8 5.9 42 42 A R H < S+ 0 0 207 -4,-0.8 -2,-0.2 -5,-0.2 -3,-0.2 0.805 123.4 29.6 -65.6 -30.4 -12.9 -7.5 6.4 43 43 A E H < S- 0 0 122 -4,-2.0 -3,-0.2 1,-0.1 -2,-0.2 0.904 138.4 -34.1 -90.7 -78.1 -12.8 -8.2 2.7 44 44 A Q < - 0 0 80 -4,-0.8 2,-0.3 -5,-0.4 -13,-0.2 -0.745 55.7-149.4-156.5 101.2 -9.3 -7.3 1.3 45 45 A P - 0 0 13 0, 0.0 4,-0.5 0, 0.0 -21,-0.2 -0.555 8.4-146.6 -75.0 131.1 -7.3 -4.5 2.7 46 46 A E S >> S+ 0 0 5 -22,-0.6 3,-3.8 -2,-0.3 4,-0.5 0.962 98.8 55.9 -59.1 -55.9 -5.0 -2.8 0.2 47 47 A H H >> S+ 0 0 6 1,-0.3 4,-4.2 2,-0.2 3,-3.0 0.881 95.5 66.8 -42.8 -47.9 -2.3 -2.1 2.7 48 48 A L H 3>>S+ 0 0 53 1,-0.3 4,-2.5 -25,-0.3 5,-0.6 0.783 89.0 69.1 -45.1 -29.2 -2.2 -5.8 3.5 49 49 A R H <>5S+ 0 0 83 -3,-3.8 4,-0.7 -4,-0.5 -1,-0.3 0.874 118.4 18.3 -58.4 -39.6 -0.9 -6.0 0.0 50 50 A S H << + 0 0 24 -4,-1.0 3,-0.9 1,-0.3 -1,-0.2 0.784 55.3 83.5 -33.4 -37.7 6.2 -6.1 2.5 55 55 A R G 3 S- 0 0 177 -3,-0.4 -1,-0.3 1,-0.3 -2,-0.1 0.773 124.9 -12.6 -39.4 -31.2 8.8 -8.8 1.9 56 56 A L G < + 0 0 122 -3,-4.7 -1,-0.3 -6,-0.1 -2,-0.2 -0.230 69.5 178.9-174.1 69.3 8.9 -7.3 -1.5 57 57 A I < + 0 0 54 -3,-0.9 3,-0.2 -7,-0.2 -2,-0.1 0.915 27.8 176.8 -40.6 -61.4 6.1 -4.9 -2.3 58 58 A A + 0 0 45 1,-0.2 2,-2.6 -4,-0.2 -2,-0.1 0.398 53.5 31.0 64.1 151.6 7.6 -4.2 -5.7 59 59 A H S S- 0 0 197 3,-0.0 -1,-0.2 1,-0.0 -2,-0.1 -0.448 84.7-176.4 70.7 -76.6 5.9 -2.0 -8.2 60 60 A R + 0 0 163 -2,-2.6 -1,-0.0 -3,-0.2 0, 0.0 0.142 36.1 69.2 68.4 168.9 4.3 0.2 -5.6 61 61 A L + 0 0 139 1,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.292 39.6 171.6 66.1 158.6 2.0 3.1 -6.3 62 62 A A - 0 0 42 -3,-0.1 -34,-0.1 -35,-0.0 -35,-0.0 0.125 13.6-163.4-159.9 -68.2 -1.6 2.7 -7.6 63 63 A S + 0 0 51 -36,-0.1 -35,-0.1 4,-0.1 -36,-0.1 0.918 28.8 146.6 63.2 100.3 -3.7 5.8 -7.6 64 64 A V S S+ 0 0 62 -37,-0.7 -36,-0.2 -38,-0.3 -37,-0.1 0.585 78.9 13.9-128.5 -45.0 -7.3 4.9 -7.9 65 65 A N S S+ 0 0 93 -38,-0.7 -38,-0.1 -39,-0.5 -37,-0.1 0.856 124.2 53.7 -99.6 -59.0 -9.2 7.5 -6.0 66 66 A L S S- 0 0 136 -40,-0.5 -39,-0.1 -39,-0.2 -38,-0.0 0.917 83.0-177.7 -40.2 -63.4 -6.7 10.3 -5.4 67 67 A S - 0 0 84 1,-0.1 2,-0.3 3,-0.0 -4,-0.1 0.789 0.6-176.5 60.3 118.5 -5.9 10.5 -9.1 68 68 A R + 0 0 164 1,-0.2 -1,-0.1 -5,-0.1 -2,-0.0 -0.875 43.2 58.9-139.2 170.2 -3.2 12.9 -10.0 69 69 A L - 0 0 134 -2,-0.3 -1,-0.2 2,-0.0 -2,-0.0 0.980 65.4-158.2 69.8 83.1 -1.5 14.3 -13.1 70 70 A P - 0 0 89 0, 0.0 -2,-0.0 0, 0.0 -3,-0.0 0.141 27.4-102.2 -75.0-164.3 -4.3 16.0 -15.2 71 71 A Y + 0 0 223 3,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.254 49.9 177.9-118.4 42.7 -4.2 16.7 -18.9 72 72 A E - 0 0 107 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.055 35.3-125.3 -42.6 156.3 -3.5 20.4 -18.7 73 73 A P - 0 0 123 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.880 41.2-168.9 -75.0 -40.9 -3.2 22.2 -22.0 74 74 A K + 0 0 150 2,-0.2 -3,-0.0 1,-0.0 0, 0.0 0.401 54.7 68.1 62.1 152.6 0.2 23.7 -21.2 75 75 A L 0 0 156 1,-0.2 -1,-0.0 0, 0.0 0, 0.0 0.992 360.0 360.0 67.6 64.0 1.8 26.4 -23.3 76 76 A K 0 0 239 0, 0.0 -1,-0.2 0, 0.0 -2,-0.2 0.029 360.0 360.0 43.3 360.0 -0.6 29.2 -22.5