==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN/RNA 17-JAN-00 1DUL . COMPND 2 MOLECULE: 4.5 S RNA DOMAIN IV; . SOURCE 2 SYNTHETIC: YES; . AUTHOR R.T.BATEY,R.P.RAMBO,L.LUCAST,B.RHA,J.DOUDNA . 69 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4659.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 75.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 11.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 59.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 0 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 93 0, 0.0 2,-0.2 0, 0.0 67,-0.1 0.000 360.0 360.0 360.0 113.6 29.6 36.6 2.6 2 2 A D > - 0 0 36 28,-0.1 4,-1.8 29,-0.0 3,-0.4 -0.562 360.0 -73.7-127.2-168.1 30.8 33.1 3.1 3 3 A L H > S+ 0 0 0 25,-2.3 4,-1.8 1,-0.2 26,-0.1 0.706 126.7 61.0 -65.9 -18.2 29.5 29.5 3.2 4 4 A N H > S+ 0 0 45 24,-0.5 4,-1.9 2,-0.2 -1,-0.2 0.918 107.0 44.6 -71.5 -42.9 28.0 30.1 6.6 5 5 A D H > S+ 0 0 77 -3,-0.4 4,-1.6 1,-0.2 -2,-0.2 0.851 114.4 49.3 -67.3 -35.1 25.8 32.9 5.0 6 6 A F H < S+ 0 0 28 -4,-1.8 -1,-0.2 2,-0.2 -2,-0.2 0.846 106.6 57.9 -71.6 -34.0 25.0 30.6 2.1 7 7 A L H < S+ 0 0 41 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.927 108.3 44.3 -61.5 -47.9 24.2 27.8 4.5 8 8 A E H < 0 0 160 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.847 360.0 360.0 -67.2 -34.3 21.5 29.9 6.2 9 9 A Q < 0 0 120 -4,-1.6 -1,-0.3 -5,-0.1 -2,-0.2 0.671 360.0 360.0 -57.4 360.0 20.1 31.1 2.9 10 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 11 23 A K > 0 0 127 0, 0.0 4,-1.3 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 4.1 16.4 16.8 -1.6 12 24 A V H > + 0 0 70 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.948 360.0 47.8 -75.9 -51.6 18.7 19.3 -3.3 13 25 A L H > S+ 0 0 61 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.850 112.3 51.6 -57.5 -36.5 18.8 21.8 -0.5 14 26 A V H > S+ 0 0 61 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.906 109.3 49.7 -66.7 -42.3 19.5 19.0 1.9 15 27 A R H X S+ 0 0 33 -4,-1.3 4,-2.0 1,-0.2 -2,-0.2 0.890 111.0 50.0 -63.6 -40.2 22.4 17.8 -0.3 16 28 A X H X S+ 0 0 57 -4,-2.5 4,-1.5 1,-0.2 -1,-0.2 0.887 111.1 47.4 -67.2 -40.1 23.8 21.3 -0.4 17 29 A E H X S+ 0 0 100 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.876 108.6 57.7 -67.2 -37.2 23.6 21.7 3.4 18 30 A A H X S+ 0 0 33 -4,-2.2 4,-1.1 1,-0.2 -2,-0.2 0.933 102.8 51.6 -59.7 -47.5 25.2 18.3 3.8 19 31 A I H >< S+ 0 0 4 -4,-2.0 3,-0.8 1,-0.2 4,-0.3 0.918 111.5 47.6 -57.9 -40.9 28.3 19.3 1.8 20 32 A I H >< S+ 0 0 3 -4,-1.5 3,-1.5 1,-0.2 -1,-0.2 0.863 104.5 61.8 -68.8 -33.0 28.7 22.3 4.0 21 33 A N H 3< S+ 0 0 102 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.729 98.9 55.9 -65.5 -19.6 28.2 20.1 7.1 22 34 A S T << S+ 0 0 33 -4,-1.1 -1,-0.3 -3,-0.8 -2,-0.2 0.506 92.9 96.3 -90.2 -2.7 31.4 18.1 6.2 23 35 A X S < S- 0 0 10 -3,-1.5 2,-0.2 -4,-0.3 -3,-0.0 -0.426 74.3-122.0 -86.4 157.7 33.5 21.3 6.1 24 36 A T > - 0 0 62 -2,-0.1 4,-1.9 1,-0.1 5,-0.2 -0.501 34.2-106.2 -86.9 166.1 35.7 22.7 8.8 25 37 A X H > S+ 0 0 117 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.874 121.7 56.2 -63.6 -34.4 35.0 26.3 10.0 26 38 A K H > S+ 0 0 162 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.892 107.9 48.3 -63.3 -39.5 38.1 27.5 8.1 27 39 A E H 4 S+ 0 0 0 2,-0.2 -1,-0.2 1,-0.2 -2,-0.2 0.872 110.9 49.9 -68.6 -36.7 36.7 26.1 4.8 28 40 A R H < S+ 0 0 39 -4,-1.9 -25,-2.3 1,-0.2 -24,-0.5 0.877 114.2 46.2 -68.8 -35.5 33.3 27.6 5.4 29 41 A A H < S+ 0 0 58 -4,-2.1 -2,-0.2 1,-0.3 -1,-0.2 0.777 129.4 21.2 -75.8 -31.1 34.9 31.0 6.1 30 42 A K >< + 0 0 102 -4,-1.7 3,-2.2 -5,-0.2 -1,-0.3 -0.622 67.0 177.5-142.1 75.3 37.3 30.9 3.1 31 43 A P G > S+ 0 0 17 0, 0.0 3,-2.0 0, 0.0 -1,-0.1 0.684 71.7 78.6 -52.3 -23.9 35.9 28.5 0.5 32 44 A E G 3 S+ 0 0 115 1,-0.3 -5,-0.1 -3,-0.1 -3,-0.0 0.724 82.2 65.0 -63.9 -18.7 38.8 29.3 -1.8 33 45 A I G < S+ 0 0 39 -3,-2.2 2,-1.3 -7,-0.2 -1,-0.3 0.606 74.7 105.2 -79.2 -8.3 41.1 27.1 0.2 34 46 A I < + 0 0 8 -3,-2.0 2,-0.1 -7,-0.2 -1,-0.1 -0.586 47.6 152.9 -78.2 95.3 39.0 24.0 -0.9 35 47 A K > - 0 0 140 -2,-1.3 4,-2.6 4,-0.0 5,-0.2 -0.228 59.3 -57.1-105.1-163.4 41.2 22.3 -3.4 36 48 A G H > S+ 0 0 43 1,-0.2 4,-2.1 2,-0.2 5,-0.2 0.849 129.2 43.9 -47.0 -54.5 41.5 18.7 -4.5 37 49 A S H > S+ 0 0 78 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.909 116.8 46.6 -63.3 -43.8 42.3 16.9 -1.3 38 50 A R H > S+ 0 0 93 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.882 109.9 54.5 -67.2 -36.5 39.7 18.8 0.7 39 51 A K H X S+ 0 0 53 -4,-2.6 4,-2.7 1,-0.2 -1,-0.2 0.901 108.9 48.8 -61.8 -42.0 37.1 18.3 -2.0 40 52 A R H X S+ 0 0 154 -4,-2.1 4,-2.3 -5,-0.2 5,-0.3 0.900 112.4 47.5 -63.9 -41.5 37.6 14.5 -1.8 41 53 A R H X S+ 0 0 104 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.931 114.8 46.3 -64.4 -46.5 37.4 14.6 2.0 42 54 A I H X S+ 0 0 0 -4,-2.8 4,-1.3 2,-0.2 6,-0.2 0.902 112.5 50.7 -62.8 -43.1 34.2 16.7 1.9 43 55 A A H ><>S+ 0 0 4 -4,-2.7 5,-2.7 -5,-0.2 3,-0.8 0.966 114.6 40.4 -61.6 -54.9 32.6 14.5 -0.9 44 56 A A H ><5S+ 0 0 82 -4,-2.3 3,-1.1 1,-0.2 -1,-0.2 0.901 114.5 55.5 -61.8 -38.5 33.2 11.2 0.8 45 57 A G H 3<5S+ 0 0 55 -4,-2.4 -1,-0.2 -5,-0.3 -2,-0.2 0.730 113.3 40.1 -66.4 -23.8 32.2 12.7 4.2 46 58 A S T <<5S- 0 0 21 -4,-1.3 -1,-0.3 -3,-0.8 -2,-0.2 0.272 114.0-111.8-106.9 7.0 28.9 13.9 2.8 47 59 A G T < 5S+ 0 0 62 -3,-1.1 -3,-0.2 -4,-0.4 2,-0.2 0.770 80.5 116.6 68.4 26.0 28.1 10.8 0.7 48 60 A X < - 0 0 65 -5,-2.7 2,-0.3 -6,-0.2 -1,-0.2 -0.585 67.6-106.7-116.1 177.0 28.5 12.8 -2.5 49 61 A Q >> - 0 0 116 -2,-0.2 4,-1.4 -3,-0.1 3,-0.9 -0.686 35.1-110.6 -99.6 161.2 30.8 12.7 -5.5 50 62 A V H 3> S+ 0 0 53 -2,-0.3 4,-2.5 1,-0.3 5,-0.2 0.860 119.5 61.8 -59.4 -33.6 33.5 15.4 -6.0 51 63 A Q H 3> S+ 0 0 124 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.839 100.6 53.0 -63.3 -29.8 31.5 16.7 -8.9 52 64 A D H <> S+ 0 0 56 -3,-0.9 4,-2.2 2,-0.2 -1,-0.2 0.874 108.3 49.8 -70.6 -37.4 28.6 17.4 -6.5 53 65 A V H X S+ 0 0 0 -4,-1.4 4,-2.8 2,-0.2 5,-0.2 0.901 109.3 52.8 -67.2 -40.2 31.0 19.4 -4.3 54 66 A N H X S+ 0 0 61 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.928 109.2 48.4 -61.1 -44.1 32.1 21.3 -7.5 55 67 A R H X S+ 0 0 51 -4,-2.0 4,-2.9 2,-0.2 5,-0.2 0.938 112.1 49.1 -61.7 -47.2 28.5 22.2 -8.4 56 68 A L H X S+ 0 0 2 -4,-2.2 4,-2.9 1,-0.2 -2,-0.2 0.944 111.9 48.3 -56.7 -51.0 27.8 23.4 -4.8 57 69 A L H X S+ 0 0 27 -4,-2.8 4,-2.5 2,-0.2 -1,-0.2 0.869 111.7 50.4 -60.0 -37.3 31.0 25.5 -4.7 58 70 A K H X S+ 0 0 118 -4,-2.2 4,-2.8 -5,-0.2 5,-0.2 0.961 111.0 48.2 -64.9 -49.5 30.0 27.0 -8.1 59 71 A Q H X S+ 0 0 91 -4,-2.9 4,-2.2 1,-0.2 -2,-0.2 0.915 111.7 50.4 -57.9 -43.2 26.5 27.8 -6.9 60 72 A F H X S+ 0 0 17 -4,-2.9 4,-2.8 1,-0.2 -1,-0.2 0.939 110.5 50.0 -59.0 -46.7 28.0 29.4 -3.8 61 73 A D H X S+ 0 0 60 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.898 108.8 51.2 -59.4 -43.3 30.4 31.4 -5.9 62 74 A D H X S+ 0 0 61 -4,-2.8 4,-1.8 1,-0.2 -1,-0.2 0.893 112.8 47.0 -62.6 -38.0 27.5 32.7 -8.2 63 75 A X H X S+ 0 0 33 -4,-2.2 4,-2.8 -5,-0.2 -2,-0.2 0.927 110.8 50.3 -69.2 -45.2 25.6 33.7 -5.1 64 76 A Q H X S+ 0 0 22 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.908 109.9 52.2 -59.7 -40.8 28.6 35.5 -3.5 65 77 A R H X S+ 0 0 159 -4,-2.4 4,-1.1 -5,-0.2 -1,-0.2 0.903 110.4 47.7 -62.9 -40.2 29.1 37.4 -6.8 66 78 A X H >X S+ 0 0 97 -4,-1.8 3,-0.7 2,-0.2 4,-0.6 0.955 111.2 50.0 -65.0 -49.9 25.5 38.5 -6.9 67 79 A X H 3< S+ 0 0 81 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.901 103.7 59.2 -54.9 -44.5 25.6 39.7 -3.2 68 80 A K H 3< S+ 0 0 89 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.863 119.1 32.1 -53.1 -36.8 28.8 41.6 -3.8 69 81 A K H << 0 0 171 -4,-1.1 -2,-0.2 -3,-0.7 -3,-0.1 0.819 360.0 360.0 -83.2 -98.5 26.8 43.5 -6.4 70 82 A X < 0 0 203 -4,-0.6 -3,-0.2 -5,-0.1 -2,-0.1 0.780 360.0 360.0 -25.2 360.0 23.1 43.8 -5.4