==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 18-JAN-00 1DUM . COMPND 2 MOLECULE: MAGAININ 2; . SOURCE 2 SYNTHETIC: YES; . AUTHOR A.TAKEDA,K.WAKAMATSU,T.TACHI,K.MATSUZAKI . 46 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3558.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 32 69.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 43.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 9 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 114 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 107.2 -9.1 12.1 5.3 2 2 A I + 0 0 116 1,-0.1 0, 0.0 3,-0.0 0, 0.0 0.594 360.0 102.9 64.2 131.4 -5.6 11.6 3.9 3 3 A G S S+ 0 0 24 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.210 77.7 53.6 146.6 -14.3 -2.8 10.4 6.2 4 4 A K S >S+ 0 0 112 4,-0.1 5,-2.9 3,-0.1 4,-0.4 0.582 103.1 53.1-118.2 -20.1 -2.5 6.7 5.5 5 5 A Y T >S+ 0 0 61 3,-0.2 5,-0.9 4,-0.2 39,-0.2 0.764 123.3 28.0 -88.3 -24.9 -1.9 6.7 1.7 6 6 A L T 5S+ 0 0 60 3,-0.1 -1,-0.2 4,-0.1 -2,-0.1 0.191 133.6 35.6-118.0 15.9 1.0 9.2 1.9 7 7 A H T 5S+ 0 0 115 0, 0.0 -2,-0.2 0, 0.0 -3,-0.1 0.191 138.1 7.2-149.4 13.5 2.2 8.3 5.4 8 8 A S T >5S+ 0 0 43 -4,-0.4 4,-1.8 25,-0.0 5,-0.3 0.281 116.1 65.5-165.4 -37.5 1.6 4.5 5.5 9 9 A A H >> S+ 0 0 165 1,-0.3 3,-1.7 2,-0.2 4,-1.4 0.956 117.9 32.2 -44.4 -67.4 5.7 2.0 3.0 12 12 A F H 3X>S+ 0 0 41 -4,-1.8 4,-2.8 1,-0.3 5,-1.1 0.888 105.3 77.4 -59.3 -33.9 3.6 -1.1 2.4 13 13 A G H 3<5S+ 0 0 5 -4,-4.9 4,-0.3 1,-0.3 -1,-0.3 0.866 107.1 32.3 -44.1 -34.9 3.4 -0.0 -1.2 14 14 A K H S+ 0 0 43 -4,-2.8 4,-3.2 -7,-0.2 5,-0.6 0.933 113.5 47.7 -59.0 -44.0 2.9 -5.3 0.5 17 17 A V H >XS+ 0 0 42 -5,-1.1 4,-1.3 -4,-0.3 5,-1.0 0.981 109.5 50.9 -63.8 -49.7 3.6 -5.6 -3.2 18 18 A G H <5S+ 0 0 40 -4,-0.7 -1,-0.3 -6,-0.3 -2,-0.2 0.728 116.5 48.5 -58.9 -13.3 6.8 -7.6 -2.5 19 19 A E H X5S+ 0 0 61 -4,-0.8 4,-1.1 -3,-0.5 -2,-0.2 0.920 129.8 14.1 -89.5 -68.1 4.4 -9.6 -0.4 20 20 A I H <5S+ 0 0 48 -4,-3.2 3,-0.5 1,-0.2 -3,-0.2 0.936 128.5 54.5 -75.2 -45.5 1.4 -10.2 -2.7 21 21 A M T <>S+ 0 0 101 3,-0.1 5,-3.9 4,-0.1 4,-3.1 0.414 103.4 61.9-146.4 -41.4 -1.9 -5.2 6.8 29 5 B Y T 4>S+ 0 0 67 3,-0.2 5,-0.8 1,-0.2 -9,-0.2 0.696 116.8 36.7 -67.8 -15.6 -0.0 -5.8 3.5 30 6 B L T 45S+ 0 0 50 3,-0.1 -1,-0.2 4,-0.1 -4,-0.0 0.552 133.6 23.5-112.2 -11.7 -3.0 -8.0 2.4 31 7 B H T 45S+ 0 0 116 -3,-0.1 -2,-0.2 3,-0.1 -3,-0.1 0.488 137.6 23.1-129.0 -11.1 -5.9 -6.0 4.0 32 8 B S T X5S+ 0 0 47 -4,-3.1 4,-1.3 3,-0.1 -3,-0.2 0.616 122.4 47.3-126.7 -31.1 -4.5 -2.5 4.4 33 9 B A H >> S+ 0 0 140 1,-0.2 3,-1.1 2,-0.2 4,-0.9 0.976 120.6 30.2 -50.2 -64.7 -6.4 -1.2 -0.6 36 12 B F H >X>S+ 0 0 36 -4,-1.3 4,-3.1 1,-0.3 5,-0.9 0.885 105.7 77.8 -64.1 -34.0 -4.2 1.9 -0.5 37 13 B G H 3<5S+ 0 0 10 -4,-5.2 4,-0.4 1,-0.3 -1,-0.3 0.875 106.3 34.1 -42.3 -38.3 -1.8 0.2 -2.9 38 14 B K H <<5S+ 0 0 177 -4,-1.6 4,-0.4 -3,-1.1 -1,-0.3 0.664 131.3 34.0 -92.7 -17.7 -4.3 1.2 -5.5 39 15 B A H X>S+ 0 0 18 -4,-3.1 4,-3.2 -7,-0.2 3,-0.7 0.929 108.2 51.4 -54.9 -43.8 -2.1 5.7 -2.3 41 17 B V H 3>XS+ 0 0 37 -5,-0.9 4,-1.4 -4,-0.4 5,-1.2 0.982 105.1 53.4 -59.7 -52.9 -0.4 5.6 -5.6 42 18 B G H 345S+ 0 0 40 -4,-0.4 -1,-0.3 -6,-0.2 -2,-0.2 0.780 115.9 45.8 -53.8 -18.2 -3.2 7.6 -7.3 43 19 B E H