==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 19-JAN-00 1DV5 . COMPND 2 MOLECULE: APO-D-ALANYL CARRIER PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; . AUTHOR B.F.VOLKMAN,Q.ZHANG,D.V.DEBABOV,E.RIVERA,G.C.KRESHECK, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5183.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 41.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 100 0, 0.0 2,-0.2 0, 0.0 76,-0.0 0.000 360.0 360.0 360.0-172.6 -1.7 -16.4 3.9 2 3 A D >> - 0 0 130 1,-0.0 3,-1.3 0, 0.0 4,-0.7 -0.437 360.0 -97.4-104.8-179.4 1.7 -16.1 5.4 3 4 A E H 3> S+ 0 0 144 1,-0.3 4,-2.4 2,-0.2 5,-0.3 0.497 112.5 82.5 -76.4 -4.0 3.7 -13.2 6.9 4 5 A A H 3> S+ 0 0 74 2,-0.2 4,-1.1 1,-0.2 -1,-0.3 0.633 92.2 49.3 -73.6 -14.1 5.4 -13.0 3.5 5 6 A I H <> S+ 0 0 16 -3,-1.3 4,-2.7 3,-0.2 5,-0.2 0.882 112.5 42.9 -89.0 -47.9 2.3 -11.0 2.5 6 7 A K H X S+ 0 0 110 -4,-0.7 4,-1.6 2,-0.2 -2,-0.2 0.865 123.7 40.4 -65.7 -37.2 2.2 -8.6 5.4 7 8 A N H X S+ 0 0 95 -4,-2.4 4,-4.5 2,-0.2 5,-0.3 0.971 116.1 47.2 -74.1 -58.7 5.9 -8.2 5.1 8 9 A G H X S+ 0 0 17 -4,-1.1 4,-4.6 -5,-0.3 5,-0.3 0.891 112.5 51.8 -48.7 -46.8 6.2 -8.1 1.4 9 10 A V H X S+ 0 0 1 -4,-2.7 4,-0.6 2,-0.2 -1,-0.2 0.941 115.6 40.3 -56.3 -51.1 3.4 -5.6 1.2 10 11 A L H >X S+ 0 0 26 -4,-1.6 4,-3.0 2,-0.2 3,-0.5 0.919 117.5 49.3 -63.8 -45.2 5.1 -3.4 3.8 11 12 A D H 3X S+ 0 0 87 -4,-4.5 4,-2.0 1,-0.3 -2,-0.2 0.936 111.8 47.3 -58.8 -49.2 8.4 -4.0 2.1 12 13 A I H 3X S+ 0 0 36 -4,-4.6 4,-0.8 -5,-0.3 -1,-0.3 0.630 114.0 54.0 -67.1 -12.7 7.0 -3.2 -1.3 13 14 A L H S+ 0 0 9 -4,-3.0 4,-1.2 1,-0.3 5,-0.9 0.793 116.9 54.5 -54.9 -28.8 8.6 1.4 2.0 15 16 A D H <5S+ 0 0 128 -4,-2.0 -1,-0.3 -5,-0.3 -2,-0.2 0.881 106.3 50.3 -72.2 -40.1 10.3 0.5 -1.3 16 17 A L H <5S+ 0 0 42 -4,-0.8 -2,-0.2 -3,-0.4 -1,-0.1 0.969 113.5 43.3 -61.2 -56.4 7.6 2.4 -3.2 17 18 A T H <5S- 0 0 16 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.784 103.1-138.3 -59.8 -28.0 7.9 5.5 -1.1 18 19 A G T <5S+ 0 0 61 -4,-1.2 2,-0.3 -5,-0.4 -3,-0.2 0.636 70.5 92.6 76.4 15.3 11.7 5.0 -1.3 19 20 A S S > S+ 0 0 70 -2,-0.6 4,-1.8 4,-0.1 3,-0.8 0.539 83.9 46.8-133.2 -43.0 8.8 5.6 7.4 22 23 A V T 34 S+ 0 0 0 1,-0.2 -2,-0.1 -3,-0.2 6,-0.1 0.789 95.3 76.7 -74.6 -29.3 6.1 3.1 6.6 23 24 A K T 34 S+ 0 0 109 -4,-0.2 -1,-0.2 1,-0.1 -3,-0.1 0.734 118.0 15.7 -52.3 -21.9 8.4 0.3 7.4 24 25 A K T <4 S+ 0 0 160 -3,-0.8 -2,-0.2 1,-0.1 -1,-0.1 0.703 114.3 69.0-113.5 -75.6 7.5 1.3 11.0 25 26 A N < - 0 0 66 -4,-1.8 3,-0.2 1,-0.1 -1,-0.1 -0.174 59.0-160.1 -50.3 139.8 4.5 3.6 11.2 26 27 A L S S+ 0 0 79 1,-0.1 44,-0.4 43,-0.1 45,-0.2 -0.083 88.6 39.9-114.5 29.9 1.3 1.7 10.3 27 28 A D S S+ 0 0 95 42,-0.1 2,-1.1 43,-0.1 -1,-0.1 0.052 71.4 142.8-165.0 30.4 -0.6 4.9 9.6 28 29 A L - 0 0 22 -3,-0.2 5,-0.1 -6,-0.1 -7,-0.1 -0.723 59.2-117.7 -85.7 100.0 1.8 7.1 7.7 29 30 A N - 0 0 48 -2,-1.1 4,-0.5 1,-0.2 6,-0.4 -0.069 20.6-159.0 -38.1 121.8 -0.3 8.8 5.1 30 31 A L S S+ 0 0 1 37,-4.1 6,-2.6 2,-0.1 -1,-0.2 0.474 93.3 31.1 -85.8 -4.1 1.2 7.7 1.8 31 32 A F S > S+ 0 0 62 36,-0.3 3,-0.9 4,-0.2 -1,-0.1 0.703 117.2 50.2-117.1 -46.8 -0.4 10.8 0.2 32 33 A E T 3 S+ 0 0 161 1,-0.3 -2,-0.1 35,-0.1 -3,-0.1 0.641 112.2 53.3 -69.5 -14.5 -0.4 13.4 2.9 33 34 A T T 3 S- 0 0 61 -4,-0.5 -1,-0.3 -5,-0.1 -3,-0.1 0.594 108.1-127.5 -93.5 -15.4 3.2 12.6 3.4 34 35 A G S < S+ 0 0 47 -3,-0.9 -4,-0.1 2,-0.2 -3,-0.1 0.290 80.3 117.4 84.8 -9.3 4.0 13.1 -0.3 35 36 A L S S+ 0 0 39 -6,-0.4 2,-0.2 2,-0.1 -4,-0.2 0.892 82.1 24.8 -54.8 -42.5 5.6 9.7 -0.3 36 37 A L + 0 0 8 -6,-2.6 -2,-0.2 1,-0.1 -3,-0.0 -0.716 53.8 171.1-119.1 170.2 3.0 8.6 -2.8 37 38 A D - 0 0 130 -2,-0.2 -1,-0.1 -5,-0.0 -2,-0.1 0.434 66.4 -75.6-142.8 -50.2 0.8 10.4 -5.3 38 39 A S S > S+ 0 0 74 -7,-0.0 4,-1.3 25,-0.0 3,-0.3 -0.024 117.7 73.9 173.7 -48.4 -1.0 7.9 -7.5 39 40 A M H > S+ 0 0 158 1,-0.2 4,-1.4 2,-0.2 5,-0.1 0.794 93.0 64.0 -56.7 -29.8 1.4 6.4 -10.0 40 41 A G H >> S+ 0 0 13 1,-0.2 4,-2.7 2,-0.2 3,-0.8 0.961 96.6 52.8 -58.8 -56.3 2.9 4.5 -7.1 41 42 A T H 3> S+ 0 0 3 1,-0.3 4,-3.6 -3,-0.3 5,-0.2 0.876 102.4 61.3 -46.5 -44.8 -0.2 2.4 -6.4 42 43 A V H 3X S+ 0 0 73 -4,-1.3 4,-1.4 2,-0.2 -1,-0.3 0.915 111.4 38.5 -48.6 -49.9 -0.2 1.4 -10.0 43 44 A Q H XX S+ 0 0 143 -4,-1.4 4,-1.6 -3,-0.8 3,-0.8 0.975 113.5 52.9 -65.7 -57.8 3.2 -0.2 -9.5 44 45 A L H 3X S+ 0 0 3 -4,-2.7 4,-1.8 1,-0.3 3,-0.2 0.862 107.7 54.9 -44.9 -41.8 2.4 -1.6 -6.0 45 46 A L H 3X S+ 0 0 14 -4,-3.6 4,-1.4 -5,-0.3 -1,-0.3 0.904 99.9 59.2 -59.3 -43.5 -0.6 -3.1 -7.7 46 47 A L H << S+ 0 0 114 -4,-1.4 3,-0.2 -3,-0.8 -1,-0.2 0.888 114.1 36.9 -51.9 -42.9 1.6 -4.8 -10.2 47 48 A E H >X>S+ 0 0 72 -4,-1.6 4,-1.7 1,-0.2 3,-0.7 0.691 114.2 56.8 -82.1 -21.3 3.3 -6.5 -7.3 48 49 A L H 3<5S+ 0 0 0 -4,-1.8 6,-4.4 -5,-0.3 -2,-0.2 0.541 107.3 50.0 -84.7 -9.0 0.0 -6.9 -5.5 49 50 A Q T 3<5S+ 0 0 104 -4,-1.4 -1,-0.2 4,-0.4 -2,-0.2 0.182 115.6 42.2-111.4 12.4 -1.3 -8.7 -8.6 50 51 A S T <45S+ 0 0 81 -3,-0.7 -2,-0.2 -5,-0.2 -3,-0.1 0.682 125.7 24.2-119.8 -58.4 1.7 -11.1 -8.8 51 52 A Q T <5S+ 0 0 142 -4,-1.7 -3,-0.2 1,-0.1 -2,-0.1 0.731 146.8 20.4 -82.8 -25.2 2.5 -12.2 -5.2 52 53 A F S > - 0 0 90 1,-0.2 3,-3.8 2,-0.1 4,-1.1 -0.626 45.2-173.4 -85.9 81.6 -11.0 4.7 -2.0 63 64 A R T 34 S+ 0 0 154 -2,-1.7 -1,-0.2 1,-0.3 5,-0.1 0.748 81.6 72.8 -45.5 -25.6 -7.6 6.3 -2.0 64 65 A K T >> S+ 0 0 98 1,-0.3 4,-0.6 2,-0.2 3,-0.6 0.847 98.8 44.6 -59.1 -35.1 -8.2 6.5 1.8 65 66 A E T <4 S+ 0 0 38 -3,-3.8 -1,-0.3 1,-0.2 -2,-0.2 0.766 117.7 43.4 -79.2 -27.8 -7.7 2.8 1.9 66 67 A W T 3< S+ 0 0 5 -4,-1.1 -1,-0.2 1,-0.2 -2,-0.2 0.118 99.6 77.7-101.5 17.4 -4.6 3.0 -0.3 67 68 A D T <4 S+ 0 0 18 -3,-0.6 -37,-4.1 -5,-0.3 -36,-0.3 0.768 96.6 40.7 -93.6 -33.2 -3.5 6.1 1.7 68 69 A T S X S- 0 0 2 -4,-0.6 4,-0.7 -39,-0.2 -39,-0.1 -0.750 76.1-128.5-115.1 162.9 -2.2 4.1 4.6 69 70 A P H > S+ 0 0 0 0, 0.0 4,-4.6 0, 0.0 5,-0.2 0.878 109.2 49.1 -75.1 -40.6 -0.2 0.8 4.9 70 71 A N H > S+ 0 0 70 -44,-0.4 4,-2.4 2,-0.3 5,-0.3 0.976 108.4 51.0 -61.6 -58.3 -2.6 -0.7 7.4 71 72 A K H > S+ 0 0 85 1,-0.2 4,-0.9 2,-0.2 -1,-0.2 0.799 118.8 42.2 -49.1 -30.4 -5.7 0.1 5.3 72 73 A I H X S+ 0 0 1 -4,-0.7 4,-3.3 2,-0.2 3,-0.5 0.937 106.7 56.7 -81.4 -54.0 -3.8 -1.6 2.5 73 74 A I H X S+ 0 0 14 -4,-4.6 4,-1.0 1,-0.3 -2,-0.2 0.767 113.1 46.6 -48.2 -26.3 -2.4 -4.5 4.5 74 75 A A H X S+ 0 0 33 -4,-2.4 4,-2.0 -5,-0.2 -1,-0.3 0.822 109.2 51.9 -84.7 -36.0 -6.1 -5.1 5.2 75 76 A K H < S+ 0 0 69 -4,-0.9 -2,-0.2 -3,-0.5 -3,-0.2 0.845 112.4 46.8 -67.8 -34.9 -7.1 -4.6 1.6 76 77 A V H >X S+ 0 0 0 -4,-3.3 4,-1.5 1,-0.2 3,-0.9 0.842 114.9 46.1 -74.3 -35.5 -4.4 -7.1 0.6 77 78 A E H 3< S+ 0 0 91 -4,-1.0 -2,-0.2 -5,-0.4 -1,-0.2 0.760 111.4 52.7 -76.7 -26.8 -5.6 -9.5 3.3 78 79 A Q T 3< S+ 0 0 145 -4,-2.0 -1,-0.2 1,-0.1 -2,-0.2 -0.013 110.2 50.5 -97.1 27.5 -9.2 -9.0 2.3 79 80 A A T <4 0 0 47 -3,-0.9 -2,-0.2 -5,-0.0 -1,-0.1 0.600 360.0 360.0-127.0 -46.0 -8.4 -9.8 -1.3 80 81 A Q < 0 0 108 -4,-1.5 -27,-0.1 -5,-0.1 -26,-0.1 -0.169 360.0 360.0 -43.7 360.0 -6.5 -13.1 -1.2