==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 24-FEB-95 1DVH . COMPND 2 MOLECULE: CYTOCHROME C553; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS; . AUTHOR M.J.BLACKLEDGE,S.MEDVEDEVA,M.PONCIN,F.GUERLESQUIN,M.BRUSCHI, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4609.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 16.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 35 44.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 0 0 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 66 0, 0.0 2,-0.3 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-168.0 -1.5 -14.1 -3.9 2 2 A D > - 0 0 99 1,-0.2 4,-2.6 2,-0.1 5,-0.2 -0.411 360.0-152.2 -62.2 118.8 2.2 -13.1 -3.8 3 3 A G H > S+ 0 0 6 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.924 94.4 53.8 -56.2 -49.5 2.5 -9.8 -2.0 4 4 A A H > S+ 0 0 36 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.929 111.5 45.8 -53.6 -47.6 5.7 -8.8 -3.9 5 5 A A H >4 S+ 0 0 58 1,-0.2 3,-1.2 2,-0.2 4,-0.3 0.935 112.9 49.3 -61.3 -47.6 4.0 -9.5 -7.3 6 6 A L H >< S+ 0 0 17 -4,-2.6 3,-0.6 1,-0.3 4,-0.3 0.887 112.7 48.6 -59.8 -40.7 0.8 -7.6 -6.3 7 7 A Y H >X S+ 0 0 7 -4,-2.8 4,-2.0 1,-0.2 3,-0.6 0.547 81.0 101.2 -76.4 -7.8 3.0 -4.6 -5.1 8 8 A K T << S+ 0 0 154 -3,-1.2 4,-0.3 -4,-0.7 -1,-0.2 0.801 85.0 45.0 -49.1 -38.4 5.1 -4.6 -8.3 9 9 A S T X4 S+ 0 0 82 -3,-0.6 3,-1.6 -4,-0.3 4,-0.3 0.883 109.1 55.2 -71.2 -40.6 3.1 -1.6 -9.8 10 10 A C T X> S+ 0 0 28 -3,-0.6 4,-2.4 -4,-0.3 3,-1.8 0.832 90.3 75.1 -62.9 -36.7 3.1 0.3 -6.5 11 11 A I H 3X S+ 0 0 43 -4,-2.0 4,-2.0 1,-0.3 -1,-0.3 0.763 82.7 71.5 -47.4 -31.0 6.9 0.1 -6.5 12 12 A G H <4 S+ 0 0 62 -3,-1.6 -1,-0.3 -4,-0.3 -2,-0.2 0.884 113.4 21.7 -57.0 -44.2 6.7 2.8 -9.2 13 13 A C H <4 S+ 0 0 50 -3,-1.8 10,-0.3 -4,-0.3 -2,-0.2 0.872 129.1 46.7 -90.2 -45.6 5.7 5.6 -6.7 14 14 A H H < S- 0 0 19 -4,-2.4 6,-2.4 1,-0.2 -3,-0.2 0.599 111.2-119.4 -73.9 -14.9 7.0 4.0 -3.5 15 15 A G >< - 0 0 17 -4,-2.0 3,-2.6 -5,-0.3 -1,-0.2 0.056 34.2 -71.7 88.2 157.5 10.4 3.1 -5.0 16 16 A A T 3 S+ 0 0 84 1,-0.3 -1,-0.1 2,-0.1 -5,-0.1 0.877 139.9 39.5 -47.4 -47.5 12.0 -0.4 -5.3 17 17 A D T 3 S- 0 0 85 -3,-0.1 -1,-0.3 -6,-0.1 13,-0.2 0.039 110.7-122.5 -90.8 15.9 12.5 -0.6 -1.5 18 18 A G S < S+ 0 0 0 -3,-2.6 12,-2.2 1,-0.2 11,-0.6 0.690 87.4 108.0 44.5 28.5 9.1 1.1 -0.8 19 19 A S + 0 0 41 10,-0.2 2,-0.4 9,-0.2 -4,-0.2 0.490 38.9 108.7-107.8 -11.5 11.0 3.8 1.1 20 20 A K S S- 0 0 94 -6,-2.4 2,-1.9 1,-0.1 9,-0.3 -0.584 82.2-118.9 -69.3 124.0 10.6 6.6 -1.5 21 21 A A - 0 0 44 -2,-0.4 6,-0.1 7,-0.1 -1,-0.1 -0.508 43.2-119.6 -67.0 86.1 8.1 9.0 0.2 22 22 A A >> - 0 0 13 -2,-1.9 3,-3.0 3,-0.3 4,-2.1 -0.023 42.9 -70.3 -40.4 126.8 5.6 8.6 -2.6 23 23 A M T 34 S+ 0 0 110 1,-0.3 -1,-0.1 -10,-0.3 -2,-0.1 0.084 136.7 44.6 22.8 -74.5 4.6 11.8 -4.5 24 24 A G T 34 S- 0 0 31 -2,-0.3 -1,-0.3 1,-0.1 -2,-0.1 0.899 133.4 -89.4 -51.4 -43.9 2.6 13.7 -1.9 25 25 A S T <4 - 0 0 67 -3,-3.0 -3,-0.3 -5,-0.1 -2,-0.2 0.448 54.0-154.9 131.4 55.6 5.5 12.6 0.6 26 26 A A < - 0 0 19 -4,-2.1 3,-0.1 1,-0.1 -3,-0.0 -0.120 26.1-105.3 -55.2 144.6 4.3 9.3 1.9 27 27 A K - 0 0 125 1,-0.1 -1,-0.1 -6,-0.1 -5,-0.1 -0.601 63.8 -81.8 -63.4 123.9 5.5 8.1 5.3 28 28 A P - 0 0 72 0, 0.0 -9,-0.2 0, 0.0 -1,-0.1 -0.072 41.8-153.4 -37.8 112.0 8.1 5.4 4.1 29 29 A V > + 0 0 8 -11,-0.6 3,-2.6 -9,-0.3 4,-0.3 0.829 62.5 112.3 -61.3 -35.8 5.8 2.4 3.4 30 30 A K T 3 S- 0 0 90 -12,-2.2 47,-0.2 1,-0.3 46,-0.1 -0.220 101.1 -13.3 -48.4 106.0 8.8 0.1 4.1 31 31 A G T 3 S+ 0 0 40 45,-2.5 -1,-0.3 -2,-0.3 46,-0.2 0.824 82.2 153.0 68.5 37.6 7.9 -1.7 7.3 32 32 A Q S < S- 0 0 51 -3,-2.6 -2,-0.1 44,-0.3 45,-0.1 0.926 73.0 -85.0 -58.0 -42.3 5.0 0.6 8.1 33 33 A G > - 0 0 23 -4,-0.3 4,-3.0 40,-0.2 3,-0.4 0.040 27.1-119.8 137.2 119.0 3.6 -2.4 10.0 34 34 A A H > S+ 0 0 37 1,-0.3 4,-3.0 2,-0.2 5,-0.2 0.860 118.3 47.7 -44.0 -46.6 1.5 -5.2 8.4 35 35 A E H > S+ 0 0 114 2,-0.2 4,-2.8 3,-0.2 -1,-0.3 0.923 116.8 44.1 -60.7 -44.3 -1.4 -4.3 10.7 36 36 A E H > S+ 0 0 66 -3,-0.4 4,-3.0 2,-0.2 5,-0.3 0.983 115.6 46.3 -59.7 -63.8 -1.0 -0.6 9.8 37 37 A L H X S+ 0 0 6 -4,-3.0 4,-2.7 1,-0.2 -2,-0.2 0.875 117.5 44.1 -47.0 -50.4 -0.5 -1.3 6.1 38 38 A Y H X S+ 0 0 64 -4,-3.0 4,-3.1 -5,-0.3 5,-0.2 0.913 112.6 49.7 -68.4 -46.4 -3.5 -3.6 6.0 39 39 A K H X S+ 0 0 105 -4,-2.8 4,-2.6 -5,-0.2 -2,-0.2 0.917 116.2 44.6 -57.8 -42.6 -5.8 -1.5 8.2 40 40 A K H X S+ 0 0 38 -4,-3.0 4,-2.8 2,-0.2 -2,-0.2 0.906 112.9 49.4 -70.2 -43.1 -5.0 1.5 5.9 41 41 A M H X S+ 0 0 10 -4,-2.7 4,-3.1 -5,-0.3 -2,-0.2 0.911 112.9 47.5 -63.4 -43.1 -5.4 -0.5 2.7 42 42 A K H X S+ 0 0 126 -4,-3.1 4,-2.8 2,-0.2 5,-0.4 0.956 110.2 54.7 -59.3 -48.2 -8.8 -1.8 3.9 43 43 A G H X>S+ 0 0 7 -4,-2.6 4,-2.2 -5,-0.2 5,-1.9 0.912 114.7 38.1 -49.6 -51.8 -9.5 1.8 4.8 44 44 A Y H <5S+ 0 0 24 -4,-2.8 -1,-0.2 3,-0.2 -2,-0.2 0.889 111.4 60.2 -69.7 -37.7 -8.7 2.9 1.2 45 45 A A H <5S+ 0 0 28 -4,-3.1 -2,-0.2 1,-0.2 -1,-0.2 0.920 120.4 26.9 -54.1 -49.6 -10.3 -0.2 -0.3 46 46 A D H <5S- 0 0 96 -4,-2.8 -1,-0.2 -5,-0.1 -2,-0.2 0.725 115.3-115.5 -85.5 -25.4 -13.7 0.7 1.3 47 47 A G T <5S+ 0 0 41 -4,-2.2 -3,-0.2 -5,-0.4 -4,-0.1 0.576 79.5 121.6 98.8 18.3 -12.9 4.5 1.3 48 48 A S < + 0 0 102 -5,-1.9 2,-0.3 -6,-0.3 -4,-0.2 -0.173 63.7 62.2-102.2 36.4 -12.8 5.1 5.1 49 49 A Y - 0 0 74 -6,-0.5 2,-0.2 -7,-0.1 9,-0.1 -0.964 63.1-160.6-153.7 160.1 -9.2 6.4 5.2 50 50 A G + 0 0 25 -2,-0.3 2,-0.2 7,-0.0 -6,-0.1 -0.707 16.5 152.8-136.3-175.1 -7.3 9.4 3.8 51 51 A G > - 0 0 41 -2,-0.2 3,-1.7 1,-0.1 4,-0.2 -0.863 63.4 -64.2 162.8 173.7 -3.9 10.9 2.9 52 52 A E T 3 S+ 0 0 124 1,-0.3 3,-0.1 -2,-0.2 -1,-0.1 0.810 137.0 17.6 -48.4 -45.4 -2.2 13.3 0.5 53 53 A R T 3> S+ 0 0 117 1,-0.1 4,-2.6 2,-0.1 3,-0.4 -0.198 80.0 143.5-125.8 42.7 -3.1 11.2 -2.5 54 54 A K H <> S+ 0 0 84 -3,-1.7 4,-3.2 1,-0.2 5,-0.2 0.775 72.0 56.5 -50.1 -35.6 -5.9 9.0 -0.9 55 55 A A H > S+ 0 0 58 -4,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.946 108.7 43.4 -65.0 -51.6 -7.8 9.1 -4.2 56 56 A M H > S+ 0 0 110 -3,-0.4 4,-2.6 2,-0.2 -2,-0.2 0.942 116.6 50.1 -57.6 -47.3 -4.9 7.7 -6.3 57 57 A M H X S+ 0 0 54 -4,-2.6 4,-3.1 2,-0.2 5,-0.3 0.961 110.7 47.1 -55.0 -60.1 -4.4 5.2 -3.5 58 58 A T H X S+ 0 0 22 -4,-3.2 4,-2.6 1,-0.2 -1,-0.2 0.908 112.2 51.4 -47.8 -51.6 -8.1 4.2 -3.4 59 59 A N H < S+ 0 0 125 -4,-2.9 4,-0.4 2,-0.2 -1,-0.2 0.900 115.4 41.4 -56.8 -44.1 -8.1 3.8 -7.2 60 60 A A H >< S+ 0 0 54 -4,-2.6 3,-2.1 -3,-0.2 4,-0.2 0.985 115.1 49.8 -65.1 -57.2 -5.0 1.6 -7.1 61 61 A V H >< S+ 0 0 5 -4,-3.1 3,-2.6 1,-0.3 -2,-0.2 0.785 92.9 76.8 -50.2 -37.8 -6.1 -0.4 -4.1 62 62 A K T 3< S+ 0 0 120 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.742 82.0 69.8 -48.4 -29.9 -9.6 -1.0 -5.7 63 63 A K T < S+ 0 0 148 -3,-2.1 -1,-0.3 -4,-0.4 -2,-0.2 0.774 100.3 54.8 -58.1 -32.7 -7.8 -3.6 -7.9 64 64 A Y < - 0 0 19 -3,-2.6 2,-0.3 -4,-0.2 3,-0.0 -0.064 67.5-150.5 -92.8-169.5 -7.4 -5.9 -4.8 65 65 A S >> - 0 0 74 -2,-0.0 4,-2.7 0, 0.0 3,-1.1 -0.923 48.1 -71.7-161.6 156.1 -9.5 -7.5 -2.1 66 66 A D H 3> S+ 0 0 108 -2,-0.3 4,-2.5 1,-0.3 5,-0.1 0.630 130.4 45.1 -22.6 -51.9 -9.0 -8.5 1.6 67 67 A E H 3> S+ 0 0 104 2,-0.2 4,-2.4 1,-0.2 -1,-0.3 0.938 118.1 42.2 -67.1 -49.9 -6.8 -11.5 0.7 68 68 A E H <> S+ 0 0 49 -3,-1.1 4,-2.8 2,-0.2 -2,-0.2 0.908 115.6 51.6 -63.2 -42.4 -4.7 -9.6 -1.8 69 69 A L H X S+ 0 0 4 -4,-2.7 4,-2.9 2,-0.2 5,-0.2 0.924 108.9 50.2 -61.1 -46.2 -4.5 -6.6 0.5 70 70 A K H X S+ 0 0 125 -4,-2.5 4,-2.9 -5,-0.3 -2,-0.2 0.933 112.5 47.2 -57.7 -46.9 -3.3 -8.9 3.4 71 71 A A H X S+ 0 0 17 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.915 112.0 50.5 -62.2 -43.9 -0.6 -10.3 1.1 72 72 A L H X S+ 0 0 1 -4,-2.8 4,-3.2 2,-0.2 5,-0.2 0.941 112.8 45.0 -59.6 -49.9 0.4 -6.8 -0.0 73 73 A A H X S+ 0 0 1 -4,-2.9 4,-2.4 2,-0.2 -2,-0.2 0.912 111.0 54.1 -61.5 -44.1 0.6 -5.5 3.5 74 74 A D H X S+ 0 0 84 -4,-2.9 4,-0.6 -5,-0.2 -2,-0.2 0.949 113.6 43.2 -53.4 -49.6 2.5 -8.7 4.6 75 75 A Y H >X S+ 0 0 53 -4,-2.8 4,-3.3 1,-0.2 3,-2.7 0.988 114.4 48.1 -60.4 -62.5 5.0 -8.0 1.8 76 76 A M H 3< S+ 0 0 8 -4,-3.2 -45,-2.5 1,-0.3 -44,-0.3 0.750 103.1 65.0 -47.7 -31.2 5.2 -4.2 2.5 77 77 A S H 3< S+ 0 0 41 -4,-2.4 -1,-0.3 -5,-0.2 -2,-0.2 0.708 120.1 21.8 -67.2 -23.2 5.8 -5.0 6.2 78 78 A K H << 0 0 119 -3,-2.7 -2,-0.2 -4,-0.6 -1,-0.1 0.731 360.0 360.0-103.0 -45.1 9.1 -6.7 5.3 79 79 A L < 0 0 36 -4,-3.3 -61,-0.1 -5,-0.2 -2,-0.1 -0.495 360.0 360.0 56.4 360.0 9.6 -4.9 2.0