==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 25-MAR-98 2DVH . COMPND 2 MOLECULE: CYTOCHROME C-553; . SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO VULGARIS SUBSP. . AUTHOR C.SEBBAN-KREUZER,M.J.BLACKLEDGE,A.DOLLA,D.MARION, . 79 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4893.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 73.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 17.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 43.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 95 0, 0.0 2,-0.3 0, 0.0 67,-0.1 0.000 360.0 360.0 360.0-166.3 -2.4 -12.2 -8.9 2 2 A D >> - 0 0 76 65,-0.1 3,-2.2 66,-0.1 4,-0.7 -0.981 360.0 -97.7-153.6 145.9 -0.3 -11.5 -5.8 3 3 A G H >> S+ 0 0 0 64,-0.3 4,-2.6 -2,-0.3 3,-0.6 0.685 115.1 61.9 -19.9 -60.3 1.1 -8.5 -3.9 4 4 A A H 3> S+ 0 0 21 1,-0.3 4,-1.3 2,-0.2 -1,-0.3 0.855 102.3 52.0 -45.4 -46.4 4.6 -8.6 -5.6 5 5 A A H <4 S+ 0 0 56 -3,-2.2 4,-0.4 1,-0.2 -1,-0.3 0.889 111.9 45.7 -60.9 -42.6 3.0 -7.9 -9.0 6 6 A L H XX S+ 0 0 35 -4,-0.7 3,-1.7 -3,-0.6 4,-1.3 0.914 103.5 63.5 -67.6 -44.0 1.0 -4.9 -7.7 7 7 A Y H 3X S+ 0 0 2 -4,-2.6 4,-2.0 1,-0.3 -1,-0.2 0.847 86.8 72.4 -50.7 -40.7 4.0 -3.4 -5.8 8 8 A K H 3< S+ 0 0 113 -4,-1.3 -1,-0.3 1,-0.2 4,-0.2 0.836 104.8 39.2 -44.0 -40.6 5.9 -2.9 -9.1 9 9 A S H X4 S+ 0 0 103 -3,-1.7 3,-2.2 -4,-0.4 -1,-0.2 0.897 108.5 62.6 -73.5 -42.9 3.5 -0.0 -9.9 10 10 A C H >X S+ 0 0 35 -4,-1.3 4,-2.4 1,-0.3 3,-2.3 0.749 82.7 79.5 -54.9 -32.8 3.5 1.2 -6.2 11 11 A I H 3X S+ 0 0 68 -4,-2.0 4,-2.1 1,-0.3 -1,-0.3 0.831 79.0 72.6 -45.1 -37.6 7.3 1.9 -6.5 12 12 A G H <4 S+ 0 0 57 -3,-2.2 -1,-0.3 -4,-0.2 -2,-0.2 0.811 115.9 17.4 -50.0 -36.4 6.2 5.1 -8.3 13 13 A C H <4 S+ 0 0 49 -3,-2.3 -2,-0.2 -4,-0.2 -1,-0.2 0.660 138.2 33.9-112.1 -23.7 5.0 6.6 -5.0 14 14 A H H <>S- 0 0 27 -4,-2.4 6,-2.5 1,-0.2 5,-1.4 0.657 92.5-144.4-107.4 -21.1 6.8 4.4 -2.3 15 15 A G T ><5 - 0 0 14 -4,-2.1 3,-0.7 -5,-0.4 -1,-0.2 -0.301 43.3 -56.7 78.9-174.1 10.1 3.5 -4.1 16 16 A A T 3 5S+ 0 0 59 1,-0.2 2,-2.0 2,-0.1 -1,-0.1 0.998 137.7 35.4 -64.4 -73.0 11.9 0.2 -3.7 17 17 A D T 3 5S- 0 0 90 62,-0.1 13,-0.3 1,-0.1 -1,-0.2 -0.326 117.4-107.5 -82.7 51.3 12.3 -0.1 0.2 18 18 A G T < 5S+ 0 0 0 -2,-2.0 12,-2.6 -3,-0.7 11,-1.3 0.616 92.6 102.7 22.4 60.3 8.9 1.7 0.6 19 19 A S < + 0 0 65 -5,-1.4 -4,-0.2 9,-0.2 -1,-0.2 0.394 36.9 119.1-141.1 -4.6 10.4 5.0 1.8 20 20 A K S S- 0 0 106 -6,-2.5 2,-0.3 1,-0.1 6,-0.1 -0.316 78.5 -88.0 -68.7 158.9 10.3 7.7 -0.9 21 21 A A - 0 0 78 1,-0.1 4,-0.2 4,-0.1 -1,-0.1 -0.517 51.0-167.6 -63.5 122.6 8.3 10.9 -0.4 22 22 A A - 0 0 25 2,-0.9 2,-2.6 -2,-0.3 -1,-0.1 0.346 63.0 -25.4 -85.4-139.4 4.8 10.0 -1.7 23 23 A M S S- 0 0 93 30,-0.1 2,-0.2 2,-0.1 -1,-0.1 -0.460 127.2 -47.8 -73.7 72.1 2.1 12.7 -2.3 24 24 A G S S- 0 0 43 -2,-2.6 -2,-0.9 2,-0.1 2,-0.4 -0.493 116.4 -6.5 91.4-165.3 3.9 14.9 0.3 25 25 A S S S+ 0 0 112 -2,-0.2 2,-0.3 -4,-0.2 -4,-0.1 -0.514 77.6 162.8 -65.3 116.1 5.1 13.8 3.8 26 26 A A - 0 0 44 -2,-0.4 -4,-0.1 -7,-0.1 -2,-0.1 -0.966 46.0 -95.8-136.4 149.8 3.8 10.3 4.4 27 27 A K - 0 0 169 -2,-0.3 2,-0.1 1,-0.1 -5,-0.0 -0.443 49.8-110.9 -61.1 133.6 4.8 7.5 6.8 28 28 A P - 0 0 69 0, 0.0 -9,-0.2 0, 0.0 -1,-0.1 -0.456 12.3-145.0 -71.2 142.2 7.2 5.1 5.1 29 29 A V > + 0 0 11 -11,-1.3 3,-2.5 -2,-0.1 4,-0.3 0.823 55.5 135.4 -70.6 -36.9 5.8 1.6 4.3 30 30 A K T 3 S- 0 0 104 -12,-2.6 47,-0.1 1,-0.3 -13,-0.1 0.155 92.1 -42.1 -20.1 92.8 9.3 0.2 5.1 31 31 A G T 3 S+ 0 0 37 48,-2.5 -1,-0.3 45,-1.1 46,-0.2 0.753 79.5 156.5 39.9 48.7 8.5 -2.8 7.2 32 32 A Q < - 0 0 76 -3,-2.5 2,-0.2 1,-0.2 -2,-0.1 0.981 69.2 -84.3 -53.7 -54.5 5.7 -1.1 9.4 33 33 A G > - 0 0 8 -4,-0.3 4,-3.2 40,-0.1 5,-0.3 -0.437 24.4-105.5 152.8 143.2 4.5 -4.7 9.9 34 34 A A H > S+ 0 0 31 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.836 121.9 52.3 -47.2 -41.2 2.3 -7.1 8.0 35 35 A E H > S+ 0 0 130 2,-0.2 4,-2.7 3,-0.2 -1,-0.2 0.965 115.3 39.3 -60.0 -55.6 -0.5 -6.5 10.5 36 36 A E H > S+ 0 0 78 2,-0.2 4,-3.1 1,-0.2 5,-0.2 0.965 119.0 46.6 -57.0 -59.8 -0.3 -2.7 10.1 37 37 A L H X S+ 0 0 6 -4,-3.2 4,-3.2 1,-0.2 5,-0.3 0.870 112.8 50.5 -54.7 -45.7 0.2 -2.8 6.4 38 38 A Y H X S+ 0 0 73 -4,-2.8 4,-3.1 -5,-0.3 5,-0.3 0.965 113.5 44.3 -59.1 -53.4 -2.6 -5.3 6.0 39 39 A K H X S+ 0 0 119 -4,-2.7 4,-2.7 -5,-0.2 -2,-0.2 0.921 119.4 42.4 -58.9 -47.0 -5.1 -3.3 8.0 40 40 A K H X S+ 0 0 67 -4,-3.1 4,-2.8 2,-0.2 9,-0.2 0.944 117.0 45.7 -65.7 -49.5 -4.1 -0.0 6.3 41 41 A M H X S+ 0 0 8 -4,-3.2 4,-3.0 -5,-0.2 -2,-0.2 0.912 116.3 47.0 -62.4 -40.3 -4.0 -1.5 2.7 42 42 A K H X S+ 0 0 90 -4,-3.1 4,-3.2 -5,-0.3 5,-0.3 0.935 110.5 54.0 -60.5 -48.9 -7.3 -3.2 3.4 43 43 A G H X>S+ 0 0 7 -4,-2.7 4,-2.1 -5,-0.3 5,-1.7 0.903 112.8 42.8 -50.1 -50.9 -8.6 0.1 4.8 44 44 A Y H <5S+ 0 0 25 -4,-2.8 -2,-0.2 3,-0.2 -1,-0.2 0.974 114.9 47.9 -62.4 -58.7 -7.6 1.8 1.5 45 45 A A H <5S+ 0 0 10 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.883 119.3 40.2 -51.2 -46.0 -8.9 -0.9 -0.8 46 46 A D H <5S- 0 0 111 -4,-3.2 -1,-0.2 -5,-0.2 -2,-0.2 0.826 112.1-121.8 -71.3 -35.8 -12.2 -1.1 1.1 47 47 A G T <5S+ 0 0 50 -4,-2.1 -3,-0.2 -5,-0.3 -4,-0.1 0.546 82.6 114.7 99.2 14.6 -12.3 2.8 1.5 48 48 A S S > - 0 0 37 -2,-0.3 4,-1.0 1,-0.2 3,-0.7 -0.873 54.4 -58.8 165.2 173.6 -8.3 11.0 2.3 52 52 A E T >4 S+ 0 0 177 1,-0.3 3,-1.8 -2,-0.2 4,-0.3 0.886 133.3 36.9 -40.6 -69.1 -7.8 13.5 -0.6 53 53 A R T >> S+ 0 0 105 1,-0.3 4,-0.5 2,-0.1 3,-0.5 0.740 111.1 63.7 -60.4 -25.0 -4.3 12.5 -1.5 54 54 A K H <> S+ 0 0 28 -3,-0.7 4,-3.2 1,-0.2 -1,-0.3 0.708 77.5 90.4 -73.1 -21.9 -5.0 8.9 -0.8 55 55 A A H S+ 0 0 141 -3,-0.5 4,-2.5 -4,-0.3 -1,-0.2 0.965 116.1 44.8 -57.4 -54.3 -5.1 7.7 -6.3 57 57 A M H X S+ 0 0 47 -4,-0.5 4,-3.2 2,-0.2 5,-0.4 0.896 107.6 61.0 -54.7 -45.6 -3.7 5.0 -4.0 58 58 A T H X S+ 0 0 33 -4,-3.2 4,-2.3 1,-0.2 -1,-0.2 0.943 111.3 37.3 -49.8 -57.6 -7.2 3.9 -3.0 59 59 A N H X S+ 0 0 97 -4,-2.1 4,-0.8 2,-0.2 -1,-0.2 0.871 114.3 57.7 -66.1 -36.0 -8.1 3.0 -6.6 60 60 A A H >< S+ 0 0 60 -4,-2.5 3,-0.9 -5,-0.2 -2,-0.2 0.968 115.1 35.2 -57.8 -52.7 -4.6 1.6 -7.2 61 61 A V H >< S+ 0 0 17 -4,-3.2 3,-2.5 1,-0.2 -1,-0.2 0.804 100.8 79.8 -71.8 -29.5 -4.9 -0.9 -4.3 62 62 A K H 3< S+ 0 0 124 -4,-2.3 -1,-0.2 -5,-0.4 -2,-0.2 0.759 80.7 69.1 -47.4 -32.0 -8.6 -1.4 -5.1 63 63 A K T << S+ 0 0 149 -3,-0.9 -1,-0.3 -4,-0.8 2,-0.3 0.813 78.2 96.3 -57.6 -34.2 -7.5 -3.7 -7.9 64 64 A A < - 0 0 6 -3,-2.5 -62,-0.0 -4,-0.2 -3,-0.0 -0.460 58.0-168.0 -62.8 123.3 -6.3 -6.2 -5.2 65 65 A S - 0 0 86 -2,-0.3 -1,-0.1 4,-0.0 -2,-0.0 0.989 54.0 -70.1 -76.9 -69.6 -9.0 -8.9 -4.6 66 66 A D S > S+ 0 0 105 3,-0.0 4,-2.6 0, 0.0 5,-0.3 0.269 128.8 52.9-157.7 -55.4 -7.9 -10.8 -1.4 67 67 A E H > S+ 0 0 90 1,-0.2 4,-3.1 2,-0.2 -64,-0.3 0.953 115.2 49.5 -54.2 -49.6 -4.8 -13.0 -2.1 68 68 A E H > S+ 0 0 24 2,-0.2 4,-2.7 1,-0.2 -65,-0.3 0.901 108.2 51.4 -53.7 -53.1 -3.3 -9.7 -3.4 69 69 A L H > S+ 0 0 17 2,-0.2 4,-2.1 1,-0.2 -2,-0.2 0.957 115.5 41.0 -54.9 -55.2 -4.3 -7.7 -0.3 70 70 A K H X S+ 0 0 125 -4,-2.6 4,-2.7 1,-0.2 -2,-0.2 0.942 118.1 46.5 -58.1 -51.9 -2.8 -10.2 2.1 71 71 A A H X S+ 0 0 16 -4,-3.1 4,-3.0 -5,-0.3 -1,-0.2 0.808 107.6 56.9 -63.8 -32.5 0.3 -10.8 -0.0 72 72 A L H X S+ 0 0 5 -4,-2.7 4,-3.0 -5,-0.2 5,-0.2 0.953 110.9 44.2 -66.3 -45.5 0.8 -7.0 -0.6 73 73 A A H X S+ 0 0 2 -4,-2.1 4,-2.3 -5,-0.2 -2,-0.2 0.953 114.7 48.7 -59.4 -52.7 1.0 -6.6 3.2 74 74 A D H < S+ 0 0 90 -4,-2.7 -2,-0.2 2,-0.2 -1,-0.2 0.932 114.7 45.7 -52.3 -51.4 3.2 -9.6 3.6 75 75 A Y H >< S+ 0 0 74 -4,-3.0 3,-2.3 1,-0.2 -2,-0.2 0.965 113.8 47.5 -56.5 -57.4 5.6 -8.4 0.8 76 76 A M H >< S+ 0 0 12 -4,-3.0 -45,-1.1 1,-0.3 3,-1.1 0.795 102.1 66.6 -57.2 -29.7 5.7 -4.8 2.1 77 77 A S T 3< S+ 0 0 32 -4,-2.3 -1,-0.3 1,-0.3 -43,-0.2 0.472 105.9 41.9 -70.9 -3.8 6.3 -6.2 5.6 78 78 A K T < 0 0 140 -3,-2.3 -1,-0.3 -5,-0.1 -2,-0.1 -0.316 360.0 360.0-134.3 45.5 9.8 -7.4 4.3 79 79 A L < 0 0 33 -3,-1.1 -48,-2.5 -50,-0.1 -62,-0.1 -0.944 360.0 360.0-157.6 360.0 10.6 -4.4 2.3