==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 07-SEP-06 2DY8 . COMPND 2 MOLECULE: CHROMO DOMAIN PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR M.OKUDA,Y.NISHIMURA . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6254.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 62.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 23.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 279 A D 0 0 211 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 178.4 9.8 15.6 -9.6 2 280 A E - 0 0 142 1,-0.0 2,-0.9 2,-0.0 50,-0.0 -0.908 360.0-176.3-131.5 108.6 10.8 12.1 -8.6 3 281 A F + 0 0 178 -2,-0.5 2,-0.2 1,-0.1 -1,-0.0 -0.509 49.2 108.1-101.1 67.9 11.8 11.2 -5.0 4 282 A E + 0 0 71 -2,-0.9 4,-0.1 4,-0.1 -1,-0.1 -0.598 42.1 91.6-142.6 79.8 12.8 7.6 -5.4 5 283 A E S S+ 0 0 162 2,-0.3 3,-0.2 -2,-0.2 -2,-0.1 0.440 95.7 5.2-131.8 -81.1 16.5 6.9 -5.2 6 284 A F S S+ 0 0 152 1,-0.2 2,-1.2 0, 0.0 -3,-0.0 0.959 127.4 52.2 -78.5 -53.1 18.1 6.0 -1.8 7 285 A H S S+ 0 0 165 26,-0.0 -2,-0.3 27,-0.0 -1,-0.2 -0.671 77.7 144.0 -86.7 96.0 15.0 5.8 0.3 8 286 A V - 0 0 41 -2,-1.2 26,-0.8 -3,-0.2 2,-0.1 -0.996 47.9-120.9-137.7 139.1 12.7 3.4 -1.6 9 287 A P E -A 33 0A 8 0, 0.0 24,-0.2 0, 0.0 3,-0.1 -0.437 12.6-154.9 -73.4 145.2 10.2 0.8 -0.4 10 288 A E E - 0 0 71 22,-1.5 2,-0.3 1,-0.3 23,-0.1 0.888 62.1 -49.7 -89.0 -43.9 10.8 -2.8 -1.5 11 289 A R E - 0 0 128 21,-0.3 21,-1.8 23,-0.1 -1,-0.3 -0.983 59.9 -81.6-176.5 175.1 7.3 -4.1 -1.3 12 290 A I E +A 31 0A 15 -2,-0.3 19,-0.2 44,-0.2 3,-0.1 -0.680 28.7 176.2 -95.4 151.3 4.2 -4.4 0.9 13 291 A I E - 0 0 58 17,-2.6 2,-0.3 1,-0.5 18,-0.1 0.635 68.0 -8.8-121.3 -32.2 3.8 -7.0 3.7 14 292 A D E -A 30 0A 77 16,-0.8 16,-3.6 2,-0.0 -1,-0.5 -0.980 60.8-133.2-158.7 167.6 0.5 -6.0 5.3 15 293 A S E -A 29 0A 30 -2,-0.3 14,-0.2 14,-0.3 2,-0.2 -0.879 5.1-163.4-128.0 162.2 -2.2 -3.2 5.3 16 294 A Q E +A 28 0A 96 12,-3.0 2,-1.1 -2,-0.3 12,-0.8 -0.607 12.7 172.5-145.7 81.7 -4.0 -1.2 8.0 17 295 A R E -A 27 0A 164 10,-0.2 2,-0.7 -2,-0.2 10,-0.3 -0.738 9.4-177.5 -94.4 97.2 -7.1 0.6 6.8 18 296 A A E -A 26 0A 43 8,-3.2 8,-4.6 -2,-1.1 2,-0.1 -0.820 20.7-137.6 -97.4 114.8 -8.8 2.0 9.9 19 297 A S E -A 25 0A 69 -2,-0.7 6,-0.3 6,-0.3 -2,-0.0 -0.414 13.7-167.1 -68.2 142.7 -12.1 3.8 9.1 20 298 A L - 0 0 78 4,-1.8 5,-0.2 -2,-0.1 -1,-0.1 0.815 9.2-158.5 -99.1 -38.8 -12.6 7.1 11.0 21 299 A E S S+ 0 0 161 3,-1.7 4,-0.1 1,-0.1 -2,-0.1 0.316 70.7 99.7 76.8 -11.4 -16.3 7.7 10.3 22 300 A D S S- 0 0 152 2,-0.2 -1,-0.1 1,-0.0 3,-0.1 0.464 121.7 -61.0 -84.0 2.5 -15.7 11.4 11.1 23 301 A G S S+ 0 0 65 1,-0.5 2,-0.2 0, 0.0 -1,-0.0 0.355 118.2 27.2 134.1 0.8 -15.5 12.0 7.3 24 302 A T - 0 0 101 2,-0.0 -4,-1.8 0, 0.0 -3,-1.7 -0.844 68.7-118.7-161.3-161.4 -12.6 9.9 6.3 25 303 A S E -A 19 0A 44 -6,-0.3 2,-0.8 -2,-0.2 -6,-0.3 -0.992 22.8-114.2-153.7 156.9 -10.5 6.8 7.1 26 304 A Q E -A 18 0A 99 -8,-4.6 -8,-3.2 -2,-0.3 2,-0.6 -0.812 33.5-176.2-100.0 105.5 -6.9 5.9 8.0 27 305 A L E +A 17 0A 54 -2,-0.8 19,-1.3 -10,-0.3 20,-0.5 -0.868 9.8 164.2-103.4 122.5 -5.3 3.9 5.2 28 306 A Q E -AB 16 45A 40 -12,-0.8 -12,-3.0 -2,-0.6 2,-0.5 -0.994 21.5-155.2-139.6 135.1 -1.7 2.6 5.9 29 307 A Y E -AB 15 44A 22 15,-3.6 15,-1.5 -2,-0.4 2,-0.5 -0.909 21.4-126.8-110.6 131.9 0.4 -0.1 4.1 30 308 A L E -AB 14 43A 32 -16,-3.6 -17,-2.6 -2,-0.5 -16,-0.8 -0.605 36.2-174.8 -75.5 119.9 3.2 -1.9 5.9 31 309 A V E -AB 12 42A 0 11,-1.4 11,-1.6 -2,-0.5 2,-0.7 -0.843 24.3-138.2-117.2 156.0 6.3 -1.6 3.7 32 310 A K E - 0 0 35 -21,-1.8 -22,-1.5 -2,-0.3 2,-0.5 -0.846 18.8-143.0-113.8 98.2 9.8 -3.1 3.9 33 311 A W E -A 9 0A 58 -2,-0.7 -26,-0.0 -24,-0.2 -2,-0.0 -0.409 64.0 -47.4 -61.3 110.3 12.5 -0.4 3.0 34 312 A R S S- 0 0 120 -26,-0.8 6,-0.2 -2,-0.5 -24,-0.2 -0.045 71.7 -94.4 55.0-165.5 15.2 -2.4 1.2 35 313 A R - 0 0 155 4,-0.1 -1,-0.1 -25,-0.1 -2,-0.1 0.695 48.0-169.6-116.6 -36.9 16.3 -5.7 2.7 36 314 A L - 0 0 95 1,-0.2 4,-0.1 3,-0.1 -2,-0.0 0.355 49.1 -78.2 57.8 155.4 19.4 -4.8 4.7 37 315 A N S S+ 0 0 175 2,-0.1 -1,-0.2 1,-0.0 0, 0.0 0.883 129.0 17.5 -55.6 -35.6 21.7 -7.5 6.2 38 316 A Y S S- 0 0 212 1,-0.2 2,-0.3 0, 0.0 -2,-0.0 0.765 114.2 -82.0-100.5 -87.1 19.1 -8.0 8.9 39 317 A D - 0 0 96 2,-0.0 2,-0.2 -6,-0.0 -1,-0.2 -0.985 33.3-171.7-174.0 169.3 15.6 -6.5 8.2 40 318 A E + 0 0 90 -2,-0.3 2,-0.3 -6,-0.2 -7,-0.1 -0.715 19.1 142.1-176.9 121.8 13.6 -3.3 8.3 41 319 A A + 0 0 38 -9,-0.2 -9,-0.2 -2,-0.2 2,-0.2 -0.939 10.0 164.0-165.4 140.8 9.9 -2.5 7.8 42 320 A T E -B 31 0A 60 -11,-1.6 -11,-1.4 -2,-0.3 2,-0.4 -0.620 40.4 -77.8-140.5-159.4 7.3 -0.1 9.3 43 321 A W E +B 30 0A 70 -13,-0.2 2,-0.3 -2,-0.2 -13,-0.2 -0.921 43.8 167.4-115.5 137.1 3.8 1.3 8.6 44 322 A E E -B 29 0A 77 -15,-1.5 -15,-3.6 -2,-0.4 -2,-0.0 -0.985 47.1 -79.3-143.4 154.2 3.1 4.2 6.1 45 323 A N E > -B 28 0A 64 -2,-0.3 4,-2.0 -17,-0.3 -17,-0.4 -0.232 34.8-135.7 -51.7 136.7 -0.1 5.6 4.5 46 324 A A H > S+ 0 0 0 -19,-1.3 4,-1.0 1,-0.2 -1,-0.2 0.697 103.8 63.2 -70.4 -12.6 -1.1 3.4 1.6 47 325 A T H > S+ 0 0 71 -20,-0.5 4,-1.8 2,-0.2 5,-0.2 0.957 105.5 40.1 -76.2 -50.4 -1.6 6.6 -0.3 48 326 A D H > S+ 0 0 82 1,-0.2 4,-4.6 2,-0.2 5,-0.4 0.965 115.7 51.5 -63.4 -48.8 2.0 7.7 -0.2 49 327 A I H X S+ 0 0 1 -4,-2.0 4,-2.9 1,-0.2 8,-0.4 0.852 104.5 59.7 -58.8 -29.2 3.3 4.2 -0.8 50 328 A V H < S+ 0 0 54 -4,-1.0 -1,-0.2 -5,-0.2 -2,-0.2 0.981 117.9 29.1 -63.3 -50.4 0.9 4.1 -3.8 51 329 A K H < S+ 0 0 143 -4,-1.8 -2,-0.2 2,-0.2 -1,-0.2 0.943 127.7 44.4 -74.0 -46.1 2.7 7.1 -5.4 52 330 A L H < S+ 0 0 47 -4,-4.6 -3,-0.2 1,-0.3 -2,-0.2 0.968 139.8 9.4 -62.1 -50.3 6.0 6.2 -3.8 53 331 A A S X S+ 0 0 7 -4,-2.9 4,-2.6 -5,-0.4 -1,-0.3 -0.621 74.6 155.0-131.7 74.5 5.6 2.5 -4.6 54 332 A P H > S+ 0 0 65 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.901 76.6 53.2 -68.3 -42.0 2.6 2.2 -6.9 55 333 A E H > S+ 0 0 137 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.914 114.1 43.3 -61.8 -39.6 3.9 -1.1 -8.5 56 334 A Q H > S+ 0 0 64 2,-0.2 4,-3.9 -7,-0.2 5,-0.3 0.966 113.3 49.2 -71.7 -51.2 4.3 -2.6 -5.1 57 335 A V H X S+ 0 0 3 -4,-2.6 4,-3.5 -8,-0.4 -2,-0.2 0.905 113.3 49.7 -56.5 -37.3 1.0 -1.3 -3.6 58 336 A K H X S+ 0 0 143 -4,-2.5 4,-2.6 2,-0.2 5,-0.3 0.985 114.4 42.0 -66.3 -53.2 -0.7 -2.7 -6.8 59 337 A H H X S+ 0 0 136 -4,-2.3 4,-1.3 -5,-0.2 -2,-0.2 0.923 119.7 46.5 -58.6 -38.7 0.9 -6.1 -6.5 60 338 A F H X S+ 0 0 19 -4,-3.9 4,-1.9 -5,-0.2 -2,-0.2 0.903 108.9 55.7 -69.2 -39.5 0.2 -5.9 -2.7 61 339 A Q H < S+ 0 0 94 -4,-3.5 4,-0.4 -5,-0.3 3,-0.2 0.953 110.4 43.0 -59.4 -50.1 -3.4 -4.7 -3.4 62 340 A N H >< S+ 0 0 129 -4,-2.6 3,-0.8 1,-0.2 -1,-0.2 0.811 110.8 58.3 -68.2 -26.2 -4.2 -7.8 -5.6 63 341 A R H >< S+ 0 0 148 -4,-1.3 3,-2.4 -5,-0.3 -1,-0.2 0.863 83.2 79.9 -72.4 -33.3 -2.4 -10.0 -3.0 64 342 A E T 3< S+ 0 0 119 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.825 95.0 50.9 -43.8 -29.6 -4.7 -8.9 -0.2 65 343 A N T < S+ 0 0 139 -3,-0.8 -1,-0.3 -4,-0.4 2,-0.2 -0.111 102.0 71.5-101.4 38.4 -7.2 -11.4 -1.7 66 344 A S < - 0 0 43 -3,-2.4 2,-1.4 3,-0.0 3,-0.2 -0.743 61.2-161.4-154.3 101.4 -4.7 -14.3 -1.8 67 345 A K S S- 0 0 187 -2,-0.2 -3,-0.1 1,-0.2 -4,-0.0 -0.643 74.5 -50.7 -86.1 91.8 -3.5 -16.1 1.3 68 346 A I 0 0 144 -2,-1.4 -1,-0.2 -5,-0.1 -5,-0.0 0.901 360.0 360.0 44.0 93.6 -0.3 -17.8 0.1 69 347 A L 0 0 205 -3,-0.2 -1,-0.1 0, 0.0 -3,-0.0 -0.679 360.0 360.0-146.2 360.0 -1.4 -19.6 -3.0