==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 18-FEB-00 1DZ7 . COMPND 2 MOLECULE: CHORIONIC GONADOTROPIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR P.J.A.ERBEL,Y.KARIMI-NEJAD,T.DE BEER,R.BOELENS, . 92 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7786.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 21 22.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 145 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -69.2 -6.4 24.1 -6.5 2 2 A P - 0 0 94 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.343 360.0-169.3 -67.5 145.5 -7.0 21.9 -3.4 3 3 A D S S+ 0 0 157 1,-0.3 2,-0.3 -2,-0.1 0, 0.0 0.348 76.4 33.7-114.7 0.5 -7.0 23.4 0.0 4 4 A V + 0 0 116 2,-0.0 2,-0.4 0, 0.0 -1,-0.3 -0.860 61.2 168.2-160.5 120.3 -7.0 20.2 2.0 5 5 A Q - 0 0 168 -2,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.980 21.3-143.0-140.5 125.8 -5.3 16.8 1.2 6 6 A D - 0 0 113 -2,-0.4 25,-0.0 1,-0.2 -2,-0.0 -0.086 48.0 -58.5 -74.6 179.1 -4.8 13.8 3.5 7 7 A a S S- 0 0 66 23,-0.1 -1,-0.2 2,-0.0 24,-0.1 0.074 74.8 -72.8 -51.6 170.2 -1.7 11.6 3.5 8 8 A P - 0 0 72 0, 0.0 2,-0.4 0, 0.0 23,-0.2 0.340 57.6 -91.9 -51.2-167.4 -0.7 9.7 0.3 9 9 A E - 0 0 124 20,-0.3 20,-0.2 21,-0.2 23,-0.1 -0.952 46.0 -85.0-121.4 138.2 -2.6 6.7 -1.1 10 10 A b S S+ 0 0 22 -2,-0.4 2,-0.3 18,-0.1 20,-0.2 -0.071 87.6 84.5 -39.1 118.6 -2.1 3.0 -0.4 11 11 A T S S- 0 0 65 49,-0.1 18,-3.4 16,-0.1 2,-0.4 -0.975 82.2 -44.6 170.0-168.6 0.6 1.9 -2.8 12 12 A L - 0 0 26 16,-0.3 2,-0.5 -2,-0.3 16,-0.2 -0.746 32.1-151.6 -92.3 132.5 4.4 1.7 -3.4 13 13 A Q - 0 0 99 -2,-0.4 -1,-0.1 14,-0.1 13,-0.0 -0.253 34.1-134.0 -93.9 44.8 6.5 4.7 -2.6 14 14 A E - 0 0 97 -2,-0.5 12,-0.4 1,-0.2 11,-0.3 0.474 20.4-113.8 -2.5 115.9 9.0 3.7 -5.2 15 15 A N > - 0 0 15 10,-1.0 4,-1.6 1,-0.2 -1,-0.2 -0.559 32.8-178.3 -72.1 100.7 12.3 4.0 -3.6 16 16 A P T 4 S+ 0 0 114 0, 0.0 -1,-0.2 0, 0.0 9,-0.1 0.457 88.0 58.3 -74.7 2.4 14.2 6.8 -5.4 17 17 A F T 4 S+ 0 0 149 7,-0.3 8,-0.1 1,-0.0 -2,-0.1 0.890 113.5 28.1 -92.4 -61.5 16.8 5.7 -2.9 18 18 A F T 4 S+ 0 0 28 6,-0.2 7,-0.3 8,-0.1 5,-0.1 0.554 87.8 154.9 -80.2 -9.6 17.4 2.1 -3.7 19 19 A S < - 0 0 68 -4,-1.6 7,-0.0 5,-0.5 -5,-0.0 0.203 27.3-158.1 -22.4 125.5 16.4 2.7 -7.3 20 20 A Q B > -A 23 0A 72 3,-6.2 2,-3.5 1,-0.0 3,-3.1 -0.734 36.7 -77.5-113.7 163.7 18.0 0.1 -9.5 21 21 A P T 3 S+ 0 0 142 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 -0.247 130.5 8.4 -58.8 68.8 18.9 -0.1 -13.2 22 22 A G T 3 S+ 0 0 79 -2,-3.5 -3,-0.0 1,-0.0 0, 0.0 0.469 127.6 58.5 131.5 13.1 15.3 -0.7 -14.1 23 23 A A B < -A 20 0A 18 -3,-3.1 -3,-6.2 -8,-0.1 2,-0.2 -0.738 59.0-150.0-172.7 118.6 13.4 -0.2 -10.8 24 24 A P - 0 0 56 0, 0.0 -5,-0.5 0, 0.0 -7,-0.3 -0.017 48.5-129.9 -80.8 31.6 13.1 2.7 -8.5 25 25 A I - 0 0 0 -7,-0.3 -10,-1.0 -11,-0.3 2,-0.3 0.294 31.1-155.3 38.6 178.6 12.6 0.3 -5.6 26 26 A L - 0 0 4 -12,-0.4 52,-0.2 -11,-0.1 42,-0.1 -0.856 30.2-150.5-159.3-163.7 9.8 0.7 -3.1 27 27 A Q - 0 0 117 -2,-0.3 -16,-0.1 50,-0.1 50,-0.1 -0.095 43.1-114.2 169.5 74.8 8.0 0.3 0.1 28 28 A c + 0 0 22 48,-0.2 2,-0.3 -16,-0.2 -16,-0.3 0.178 52.4 163.9 -21.7 109.9 4.2 0.1 -0.0 29 29 A M + 0 0 106 -18,-3.4 2,-0.3 -20,-0.2 -20,-0.3 -0.974 15.4 80.6-146.4 128.9 3.2 3.3 1.8 30 30 A G - 0 0 26 -2,-0.3 -21,-0.2 -20,-0.2 2,-0.2 -0.930 68.9 -84.1 175.4-151.3 -0.1 5.2 1.9 31 31 A a - 0 0 40 -2,-0.3 2,-0.6 -23,-0.2 28,-0.1 -0.630 29.2-138.9-153.3 87.6 -3.5 5.2 3.6 32 32 A d - 0 0 37 26,-0.2 2,-0.7 -2,-0.2 -23,-0.1 -0.254 29.5-127.7 -50.1 97.3 -6.3 3.1 2.1 33 33 A F + 0 0 123 -2,-0.6 2,-0.2 1,-0.1 -1,-0.1 -0.320 51.7 150.0 -54.2 99.7 -9.1 5.5 2.4 34 34 A S + 0 0 26 -2,-0.7 2,-0.1 24,-0.1 -1,-0.1 -0.629 16.5 135.5-138.2 77.0 -11.7 3.4 4.2 35 35 A R S S- 0 0 174 -2,-0.2 17,-0.1 17,-0.0 -2,-0.0 -0.417 71.1 -91.0-110.8-172.0 -14.0 5.5 6.4 36 36 A A S S+ 0 0 102 1,-0.3 -2,-0.0 -2,-0.1 -1,-0.0 0.228 121.6 37.8 -85.9 14.6 -17.7 5.7 7.1 37 37 A Y S S- 0 0 168 0, 0.0 -1,-0.3 0, 0.0 -3,-0.0 -0.422 80.0-159.9-165.5 79.2 -18.0 8.2 4.2 38 38 A P - 0 0 85 0, 0.0 -4,-0.1 0, 0.0 -2,-0.0 -0.192 38.8 -80.2 -62.3 154.5 -15.8 7.6 1.1 39 39 A T - 0 0 91 1,-0.1 0, 0.0 -6,-0.1 0, 0.0 -0.021 57.1 -85.7 -51.2 159.0 -15.0 10.5 -1.3 40 40 A P S S+ 0 0 102 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.819 71.8 170.0 -34.2 -46.8 -17.7 11.4 -3.9 41 41 A L - 0 0 71 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.135 28.1-154.9 53.3-177.7 -16.2 8.7 -6.1 42 42 A R S S+ 0 0 212 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.139 71.8 52.1 172.9 47.4 -18.0 7.6 -9.3 43 43 A S + 0 0 100 1,-0.1 3,-0.2 3,-0.0 -2,-0.0 0.302 68.1 102.6-152.3 -60.1 -17.1 4.1 -10.3 44 44 A K + 0 0 125 1,-0.2 -1,-0.1 0, 0.0 4,-0.0 0.045 33.0 121.2 -37.7 144.1 -17.5 1.5 -7.5 45 45 A K + 0 0 176 -3,-0.1 -1,-0.2 2,-0.0 0, 0.0 0.176 46.5 88.9-177.7 -33.8 -20.6 -0.6 -7.9 46 46 A T S S- 0 0 99 -3,-0.2 -3,-0.0 0, 0.0 0, 0.0 0.388 98.3 -56.4 -60.5-154.1 -19.6 -4.3 -8.2 47 47 A M S S+ 0 0 175 2,-0.0 -2,-0.0 -3,-0.0 0, 0.0 0.857 72.6 143.7 -55.6-109.0 -19.2 -6.5 -5.1 48 48 A L - 0 0 105 1,-0.1 2,-0.4 -4,-0.0 0, 0.0 0.650 35.7-143.7 71.1 127.7 -16.7 -5.0 -2.6 49 49 A V - 0 0 126 2,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.989 10.6-166.2-128.8 130.1 -17.2 -5.2 1.1 50 50 A Q + 0 0 100 -2,-0.4 -16,-0.0 1,-0.1 -15,-0.0 -0.962 31.4 134.0-119.6 129.3 -16.4 -2.6 3.7 51 51 A K + 0 0 186 -2,-0.5 -1,-0.1 2,-0.0 -17,-0.0 -0.043 27.5 173.0-163.2 41.8 -16.2 -3.2 7.5 52 52 A N - 0 0 64 -17,-0.1 2,-0.3 1,-0.1 5,-0.1 0.177 19.3-137.8 -47.2 175.9 -13.0 -1.5 8.8 53 53 A V - 0 0 84 3,-0.2 2,-0.2 2,-0.0 -1,-0.1 -0.841 23.1 -79.3-136.3 172.7 -12.3 -1.3 12.5 54 54 A T S S+ 0 0 128 -2,-0.3 -1,-0.0 3,-0.0 0, 0.0 -0.474 99.0 9.7 -75.7 144.7 -10.9 1.1 15.1 55 55 A S S S+ 0 0 108 -2,-0.2 -1,-0.0 2,-0.0 -2,-0.0 0.817 125.7 18.0 53.4 116.5 -7.2 1.6 15.4 56 56 A E S S- 0 0 165 1,-0.0 2,-0.2 2,-0.0 -3,-0.2 0.792 77.4-178.2 61.4 116.5 -5.2 -0.0 12.6 57 57 A S - 0 0 35 1,-0.4 28,-0.1 -5,-0.1 -25,-0.1 -0.660 37.5 -29.6-131.8-172.7 -7.2 -0.9 9.5 58 58 A T + 0 0 48 -2,-0.2 -1,-0.4 -24,-0.1 2,-0.3 0.111 63.0 178.9 -37.1 153.9 -6.8 -2.5 6.0 59 59 A e E -B 85 0B 40 26,-3.7 26,-4.6 24,-0.1 2,-0.6 -0.969 30.2-103.6-156.7 166.5 -3.4 -2.1 4.4 60 60 A b E -B 84 0B 22 24,-0.3 2,-0.6 -2,-0.3 24,-0.3 -0.878 25.1-172.9-104.5 123.6 -1.4 -3.1 1.3 61 61 A V - 0 0 23 22,-1.9 22,-0.1 -2,-0.6 25,-0.0 -0.838 46.3 -97.9-116.5 91.3 1.1 -5.9 1.6 62 62 A A - 0 0 18 -2,-0.6 20,-0.4 20,-0.2 3,-0.2 0.393 28.1-148.4 -8.4 108.2 3.1 -6.1 -1.7 63 63 A K S S+ 0 0 128 18,-0.3 2,-0.3 1,-0.3 19,-0.2 0.835 87.4 9.8 -57.7 -33.4 1.3 -8.9 -3.6 64 64 A S B S-C 81 0C 51 17,-1.6 16,-3.8 13,-0.1 17,-1.4 -0.924 77.0-156.9-153.2 121.0 4.7 -9.6 -5.1 65 65 A Y - 0 0 113 -2,-0.3 13,-0.4 14,-0.3 14,-0.3 -0.658 16.8-162.9 -98.3 157.6 8.1 -8.2 -4.1 66 66 A N - 0 0 99 11,-0.7 12,-0.4 10,-0.3 11,-0.1 -0.018 34.9-151.1-123.0 24.3 11.3 -7.9 -6.1 67 67 A R - 0 0 109 1,-0.2 8,-0.1 8,-0.1 -2,-0.0 0.535 20.5-173.9 -0.3 119.8 13.2 -7.5 -2.9 68 68 A V - 0 0 25 -42,-0.1 -1,-0.2 -48,-0.0 6,-0.1 -0.373 21.8-146.2-124.5 48.3 16.3 -5.4 -3.5 69 69 A T + 0 0 75 4,-0.1 6,-0.2 1,-0.1 2,-0.2 0.221 28.7 178.3 -20.4 118.2 17.8 -5.7 -0.1 70 70 A V >> - 0 0 31 1,-0.3 4,-3.3 2,-0.1 3,-0.5 -0.494 36.5 -3.1-119.6-170.8 19.5 -2.4 0.5 71 71 A M G >4 S+ 0 0 103 1,-0.3 3,-2.0 2,-0.2 -1,-0.3 0.359 133.4 8.7 -13.5 134.4 21.5 -0.6 3.2 72 72 A G G 34 S- 0 0 83 1,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.751 133.8 -67.3 54.3 24.3 21.8 -2.7 6.4 73 73 A G G <4 S+ 0 0 38 -3,-0.5 -1,-0.3 -4,-0.1 -2,-0.2 0.816 86.1 172.5 67.0 30.8 20.3 -5.5 4.5 74 74 A F << - 0 0 109 -4,-3.3 2,-0.2 -3,-2.0 -2,-0.1 0.101 23.3-140.1 -59.7-178.8 17.0 -3.7 4.2 75 75 A K + 0 0 112 -6,-0.2 -8,-0.1 -7,-0.1 -6,-0.1 -0.699 27.3 174.2-155.9 100.4 14.2 -5.1 2.1 76 76 A V > - 0 0 6 -2,-0.2 3,-2.2 -10,-0.1 -10,-0.3 0.136 44.8-133.4 -87.2 18.3 11.8 -3.0 -0.1 77 77 A E T 3 - 0 0 32 1,-0.3 -11,-0.7 -12,-0.2 3,-0.4 0.807 37.4-108.6 27.8 38.8 10.5 -6.3 -1.3 78 78 A N T 3 - 0 0 12 -12,-0.4 -1,-0.3 -13,-0.4 -53,-0.1 0.618 43.1-129.5 5.2 56.8 11.0 -4.4 -4.5 79 79 A H < + 0 0 21 -3,-2.2 -14,-0.3 -14,-0.3 -1,-0.2 0.029 41.0 172.9 -33.9 106.1 7.2 -4.3 -4.4 80 80 A T S S+ 0 0 74 -16,-3.8 2,-0.3 -3,-0.4 -15,-0.2 0.637 73.9 6.2 -91.1 -19.1 6.2 -5.5 -7.8 81 81 A A B -C 64 0C 27 -17,-1.4 -17,-1.6 -70,-0.0 2,-0.4 -0.961 65.2-158.0-162.8 145.6 2.5 -5.5 -6.7 82 82 A c - 0 0 35 -20,-0.4 2,-0.5 -2,-0.3 -20,-0.2 -0.995 1.8-164.3-133.9 136.8 0.6 -4.5 -3.6 83 83 A H - 0 0 67 -2,-0.4 -22,-1.9 -22,-0.1 2,-0.4 -0.970 17.0-137.4-124.3 120.1 -2.8 -5.6 -2.3 84 84 A d E +B 60 0B 50 -2,-0.5 -24,-0.3 -24,-0.3 2,-0.3 -0.585 54.0 101.4 -76.6 128.8 -4.8 -3.7 0.3 85 85 A S E -B 59 0B 36 -26,-4.6 -26,-3.7 -2,-0.4 -53,-0.1 -0.908 68.1 -20.7-174.5-159.7 -6.4 -5.9 2.9 86 86 A T - 0 0 46 -2,-0.3 3,-0.1 -28,-0.2 -1,-0.1 -0.187 37.0-167.3 -64.6 160.3 -6.1 -7.2 6.5 87 87 A e + 0 0 43 1,-0.1 3,-0.2 -31,-0.1 -1,-0.1 0.040 66.7 84.3-138.2 24.1 -2.8 -7.2 8.3 88 88 A Y S S+ 0 0 161 1,-0.1 3,-0.1 4,-0.0 -1,-0.1 -0.404 88.6 43.0-126.5 55.8 -3.6 -9.4 11.3 89 89 A Y S S+ 0 0 175 1,-0.4 2,-0.2 -3,-0.1 -1,-0.1 0.224 106.4 43.9 176.0 29.7 -3.0 -12.9 10.0 90 90 A H S S+ 0 0 106 -3,-0.2 -1,-0.4 0, 0.0 0, 0.0 -0.847 97.3 28.0 178.9 143.9 0.2 -13.0 7.8 91 91 A K 0 0 119 -2,-0.2 -4,-0.0 1,-0.2 -3,-0.0 0.504 360.0 360.0 76.3 3.9 3.7 -11.7 7.8 92 92 A S 0 0 162 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.180 360.0 360.0 -92.9 360.0 3.7 -11.8 11.6