==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-SEP-06 2DZI . COMPND 2 MOLECULE: UBIQUITIN-LIKE PROTEIN 4A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, . 81 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5724.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 69.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 19.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 163.2 1.5 -15.8 14.7 2 2 A S - 0 0 122 2,-0.0 4,-0.2 4,-0.0 2,-0.2 -0.996 360.0-150.9-141.8 133.8 5.0 -14.7 13.8 3 3 A S + 0 0 88 -2,-0.4 2,-0.4 2,-0.1 4,-0.1 -0.583 57.1 64.6 -99.6 163.4 6.3 -12.6 11.0 4 4 A G S S+ 0 0 54 2,-1.1 -1,-0.1 -2,-0.2 5,-0.0 -0.855 89.1 49.8 134.4-100.9 9.8 -12.7 9.3 5 5 A S S S+ 0 0 138 -2,-0.4 2,-0.3 3,-0.0 -2,-0.1 0.891 116.7 44.2 -39.0 -55.9 10.9 -15.8 7.5 6 6 A S S S+ 0 0 103 -4,-0.2 -2,-1.1 2,-0.0 2,-0.1 -0.723 112.3 7.2 -96.6 144.5 7.6 -15.9 5.6 7 7 A G S S- 0 0 49 -2,-0.3 2,-0.3 -4,-0.1 16,-0.0 -0.283 79.2 -97.1 83.9-173.0 6.1 -12.8 4.0 8 8 A M E -A 24 0A 18 16,-2.3 16,-2.1 62,-0.1 2,-0.5 -0.927 21.4-111.2-143.6 166.7 7.5 -9.3 3.7 9 9 A Q E -A 23 0A 79 -2,-0.3 63,-0.6 14,-0.2 2,-0.5 -0.899 27.5-168.2-107.0 125.2 7.4 -5.9 5.5 10 10 A L E -Ab 22 72A 5 12,-2.6 12,-2.1 -2,-0.5 2,-0.7 -0.947 5.5-164.1-116.0 128.1 5.7 -3.0 3.8 11 11 A T E -A 21 0A 47 61,-1.0 2,-0.5 -2,-0.5 63,-0.4 -0.885 8.5-158.6-114.4 102.1 6.1 0.6 5.1 12 12 A V E -A 20 0A 6 8,-2.2 8,-1.9 -2,-0.7 2,-0.4 -0.663 12.5-176.5 -82.1 125.7 3.5 3.0 3.6 13 13 A K E -Ac 19 75A 105 61,-2.4 63,-2.8 -2,-0.5 2,-0.3 -0.986 15.6-143.4-127.7 128.5 4.5 6.6 3.8 14 14 A A E > - c 0 76A 13 4,-3.1 3,-2.6 -2,-0.4 63,-0.2 -0.691 41.9 -86.4 -91.0 140.5 2.4 9.6 2.7 15 15 A L T 3 S- 0 0 139 61,-1.5 -1,-0.1 -2,-0.3 3,-0.1 -0.199 106.7 -26.3 -45.9 107.7 3.9 12.6 1.0 16 16 A Q T 3 S+ 0 0 188 1,-0.1 -1,-0.3 -2,-0.1 2,-0.1 0.888 131.3 85.8 47.4 45.4 5.0 14.7 4.0 17 17 A G S < S- 0 0 54 -3,-2.6 2,-0.2 1,-0.3 -1,-0.1 -0.147 83.8 -36.0-136.4-128.0 2.2 13.1 6.0 18 18 A R - 0 0 186 -3,-0.1 -4,-3.1 -2,-0.1 -1,-0.3 -0.498 47.5-171.5-103.8 175.1 1.8 9.9 8.1 19 19 A E E -A 13 0A 103 -6,-0.2 2,-0.3 -2,-0.2 -6,-0.2 -0.968 7.4-179.4-158.5 169.3 3.1 6.4 7.7 20 20 A C E -A 12 0A 37 -8,-1.9 -8,-2.2 -2,-0.3 2,-0.2 -0.921 22.0-123.6-174.1 148.2 2.8 2.8 9.1 21 21 A S E -A 11 0A 51 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.664 25.8-177.8 -99.9 155.8 4.2 -0.6 8.6 22 22 A L E -A 10 0A 17 -12,-2.1 -12,-2.6 -2,-0.2 2,-0.7 -0.994 27.5-119.1-151.5 152.1 2.3 -3.8 7.9 23 23 A Q E +A 9 0A 106 -2,-0.3 -14,-0.2 -14,-0.2 -16,-0.1 -0.842 46.5 149.3 -98.4 115.8 3.0 -7.6 7.4 24 24 A V E -A 8 0A 6 -16,-2.1 -16,-2.3 -2,-0.7 -2,-0.1 -0.988 40.2-113.2-145.3 152.7 2.0 -8.9 3.9 25 25 A P - 0 0 53 0, 0.0 3,-0.3 0, 0.0 -1,-0.1 0.120 33.9-105.8 -69.7-170.4 3.1 -11.6 1.5 26 26 A E S S+ 0 0 129 1,-0.2 38,-0.7 37,-0.1 42,-0.2 0.668 118.4 48.7 -93.9 -21.1 4.7 -11.1 -2.0 27 27 A D S S+ 0 0 88 36,-0.2 2,-0.2 37,-0.1 -1,-0.2 -0.011 79.8 144.6-106.8 27.3 1.6 -12.1 -3.9 28 28 A E - 0 0 43 -3,-0.3 35,-1.7 1,-0.1 2,-0.3 -0.488 54.4-116.3 -70.5 131.7 -0.7 -9.8 -1.8 29 29 A L B >> -F 62 0B 63 -2,-0.2 4,-2.6 33,-0.2 3,-1.7 -0.524 13.7-131.4 -71.6 128.2 -3.6 -8.3 -3.9 30 30 A V H 3> S+ 0 0 0 31,-2.9 4,-1.2 -2,-0.3 5,-0.2 0.790 108.1 64.5 -47.7 -29.8 -3.3 -4.5 -4.0 31 31 A S H 3> S+ 0 0 27 30,-0.4 4,-1.5 27,-0.3 -1,-0.3 0.897 111.2 33.2 -62.4 -41.7 -7.0 -4.6 -3.1 32 32 A T H <> S+ 0 0 51 -3,-1.7 4,-2.0 2,-0.2 -2,-0.2 0.800 109.9 65.3 -84.1 -31.9 -6.2 -6.1 0.3 33 33 A L H X S+ 0 0 7 -4,-2.6 4,-0.7 1,-0.2 -2,-0.2 0.771 110.7 39.4 -61.3 -25.6 -2.9 -4.3 0.7 34 34 A K H X S+ 0 0 16 -4,-1.2 4,-2.4 -5,-0.3 3,-0.3 0.899 110.0 55.0 -89.1 -50.4 -4.9 -1.0 0.8 35 35 A Q H X S+ 0 0 112 -4,-1.5 4,-0.9 1,-0.2 -2,-0.2 0.825 104.3 59.8 -52.6 -33.2 -7.8 -2.1 2.9 36 36 A L H >X S+ 0 0 60 -4,-2.0 3,-0.9 1,-0.2 4,-0.9 0.952 108.4 40.6 -61.2 -51.8 -5.3 -3.3 5.5 37 37 A V H >X>S+ 0 0 2 -4,-0.7 4,-2.3 -3,-0.3 5,-0.5 0.855 101.9 71.8 -65.5 -35.7 -3.8 0.2 6.0 38 38 A S H 3<5S+ 0 0 25 -4,-2.4 5,-0.4 1,-0.3 -1,-0.2 0.812 102.3 44.7 -49.7 -32.0 -7.3 1.8 5.8 39 39 A E H <<5S+ 0 0 150 -3,-0.9 -1,-0.3 -4,-0.9 -2,-0.2 0.787 110.5 55.0 -83.2 -30.2 -7.8 0.3 9.3 40 40 A K H <<5S+ 0 0 100 -4,-0.9 -2,-0.2 -3,-0.5 -3,-0.1 0.983 124.1 22.4 -66.3 -59.6 -4.4 1.4 10.5 41 41 A L T <5S- 0 0 34 -4,-2.3 -1,-0.2 2,-0.1 -2,-0.2 0.429 105.6-124.1 -87.7 0.1 -4.7 5.1 9.8 42 42 A N < + 0 0 132 -5,-0.5 -3,-0.2 1,-0.2 -4,-0.2 0.803 64.7 142.4 61.0 29.3 -8.5 4.7 9.8 43 43 A V - 0 0 34 -6,-0.4 -1,-0.2 -5,-0.4 2,-0.2 -0.846 55.0-113.2-106.6 138.9 -8.6 6.2 6.3 44 44 A P >> - 0 0 64 0, 0.0 3,-1.9 0, 0.0 4,-1.5 -0.451 16.4-131.7 -69.8 135.2 -10.9 5.0 3.5 45 45 A V T 34 S+ 0 0 47 1,-0.3 -10,-0.0 2,-0.2 -2,-0.0 0.754 105.2 71.5 -57.0 -24.0 -9.3 3.3 0.5 46 46 A R T 34 S+ 0 0 198 1,-0.1 -1,-0.3 3,-0.1 -3,-0.0 0.826 110.9 28.2 -62.0 -32.1 -11.3 5.7 -1.6 47 47 A Q T <4 S+ 0 0 62 -3,-1.9 32,-0.3 31,-0.1 -2,-0.2 0.915 109.2 68.1 -92.0 -68.6 -9.1 8.5 -0.5 48 48 A Q < - 0 0 6 -4,-1.5 2,-0.4 30,-0.2 30,-0.2 -0.220 65.8-169.6 -55.3 141.2 -5.7 7.0 0.3 49 49 A R E -D 77 0A 101 28,-1.6 28,-1.5 2,-0.0 2,-0.2 -0.997 14.5-136.0-140.8 133.6 -3.8 5.7 -2.8 50 50 A L E -D 76 0A 2 -2,-0.4 7,-0.8 26,-0.2 2,-0.3 -0.556 20.8-172.9 -86.9 151.8 -0.6 3.6 -3.0 51 51 A L E -DE 75 56A 40 24,-1.1 24,-2.6 -2,-0.2 2,-0.5 -0.991 11.3-163.6-148.2 136.7 2.2 4.3 -5.5 52 52 A F E > S- E 0 55A 27 3,-1.9 3,-1.3 -2,-0.3 22,-0.1 -0.960 77.4 -30.3-126.1 115.5 5.3 2.5 -6.5 53 53 A K T 3 S- 0 0 183 -2,-0.5 -1,-0.1 1,-0.3 3,-0.1 0.833 127.1 -48.2 48.7 35.5 8.1 4.3 -8.4 54 54 A G T 3 S+ 0 0 76 1,-0.2 2,-0.5 21,-0.0 -1,-0.3 0.745 109.5 135.2 78.5 23.9 5.4 6.5 -9.9 55 55 A K E < -E 52 0A 118 -3,-1.3 -3,-1.9 11,-0.0 2,-0.6 -0.928 51.9-137.2-111.3 122.7 3.2 3.5 -10.8 56 56 A A E -E 51 0A 65 -2,-0.5 2,-0.2 -5,-0.2 -5,-0.2 -0.665 20.7-147.0 -80.2 116.6 -0.5 3.5 -10.1 57 57 A L - 0 0 15 -7,-0.8 2,-0.5 -2,-0.6 -7,-0.1 -0.569 5.8-137.0 -84.3 146.6 -1.6 0.2 -8.6 58 58 A A > - 0 0 38 -2,-0.2 3,-1.9 4,-0.0 2,-0.5 -0.909 26.4-108.7-108.6 125.5 -5.1 -1.2 -9.4 59 59 A D T 3 S+ 0 0 121 -2,-0.5 3,-0.1 1,-0.2 -30,-0.1 -0.286 107.9 35.3 -51.7 101.4 -7.1 -2.8 -6.6 60 60 A G T 3 S+ 0 0 34 1,-0.5 -1,-0.2 -2,-0.5 -28,-0.1 -0.135 90.9 96.2 146.6 -44.4 -7.0 -6.4 -7.6 61 61 A K S < S- 0 0 94 -3,-1.9 -31,-2.9 -32,-0.1 -1,-0.5 -0.012 74.3-106.6 -66.4 177.8 -3.5 -7.0 -9.1 62 62 A R B >> -F 29 0B 112 -33,-0.3 3,-1.9 -32,-0.1 4,-0.9 -0.924 10.4-132.7-115.0 136.0 -0.6 -8.5 -7.1 63 63 A L G >4>S+ 0 0 0 -35,-1.7 5,-2.0 -2,-0.4 3,-0.6 0.816 109.0 63.5 -51.4 -32.1 2.5 -6.5 -6.0 64 64 A S G >45S+ 0 0 42 -38,-0.7 3,-1.2 1,-0.2 -1,-0.3 0.838 95.8 57.6 -62.7 -33.4 4.5 -9.3 -7.4 65 65 A D G <45S+ 0 0 114 -3,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.801 102.9 53.6 -67.3 -29.2 3.2 -8.5 -10.9 66 66 A Y G <<5S- 0 0 44 -4,-0.9 -1,-0.3 -3,-0.6 -2,-0.2 0.427 121.7-109.4 -85.0 0.8 4.6 -5.0 -10.5 67 67 A S T < 5 + 0 0 107 -3,-1.2 2,-0.7 1,-0.2 -3,-0.2 0.857 68.7 149.4 73.6 36.5 8.0 -6.4 -9.7 68 68 A I < + 0 0 4 -5,-2.0 -1,-0.2 -42,-0.2 -2,-0.1 -0.891 19.6 177.3-108.0 109.0 7.8 -5.3 -6.1 69 69 A G - 0 0 31 -2,-0.7 3,-0.3 1,-0.2 -61,-0.1 0.038 39.4 -48.7 -90.6-158.4 9.6 -7.6 -3.6 70 70 A P S S+ 0 0 85 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 -0.131 115.8 35.3 -69.7 169.7 10.2 -7.4 0.1 71 71 A N S S+ 0 0 145 -62,-0.4 2,-0.5 1,-0.2 -61,-0.1 0.879 83.4 157.4 51.4 41.7 11.4 -4.3 2.0 72 72 A S B -b 10 0A 16 -63,-0.6 -61,-1.0 -3,-0.3 2,-0.8 -0.861 36.9-144.8-102.8 128.3 9.4 -2.2 -0.4 73 73 A K - 0 0 160 -2,-0.5 2,-0.2 -63,-0.2 -61,-0.2 -0.812 16.6-156.1 -95.0 110.1 8.4 1.3 0.6 74 74 A L - 0 0 2 -2,-0.8 -61,-2.4 -63,-0.4 2,-0.5 -0.568 11.8-128.5 -85.2 148.0 5.0 2.3 -0.8 75 75 A N E -cD 13 51A 83 -24,-2.6 -24,-1.1 -2,-0.2 2,-0.3 -0.848 18.1-149.2-100.8 127.5 3.9 5.9 -1.4 76 76 A L E -cD 14 50A 9 -63,-2.8 -61,-1.5 -2,-0.5 2,-0.3 -0.731 13.8-171.6 -96.3 143.2 0.6 7.0 0.0 77 77 A V E - D 0 49A 42 -28,-1.5 -28,-1.6 -2,-0.3 2,-0.5 -0.987 18.5-132.6-136.0 144.7 -1.5 9.8 -1.6 78 78 A V - 0 0 96 -2,-0.3 -30,-0.2 -30,-0.2 -31,-0.1 -0.844 24.5-174.0-100.2 126.6 -4.6 11.7 -0.6 79 79 A K - 0 0 84 -2,-0.5 2,-0.3 -32,-0.3 -31,-0.0 -0.932 29.6-107.0-121.8 143.9 -7.5 12.0 -3.1 80 80 A P 0 0 125 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.492 360.0 360.0 -69.8 127.0 -10.7 14.0 -2.8 81 81 A L 0 0 157 -2,-0.3 -34,-0.1 0, 0.0 -35,-0.0 -0.813 360.0 360.0 -99.3 360.0 -13.8 11.9 -2.3