==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SUGAR BINDING PROTEIN 29-SEP-06 2DZJ . COMPND 2 MOLECULE: SYNAPTIC GLYCOPROTEIN SC2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.ZHAO,M.YONEYAMA,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, . 88 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6306.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 55.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 8.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-152.3 -20.3 -19.1 -17.6 2 2 A S + 0 0 90 3,-0.0 0, 0.0 0, 0.0 0, 0.0 0.827 360.0 169.5-101.5 -48.6 -18.3 -16.3 -19.3 3 3 A S S S- 0 0 127 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.822 77.3 -55.8 34.6 42.9 -21.0 -14.3 -21.0 4 4 A G - 0 0 61 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.504 67.0-157.9 68.4 140.9 -18.3 -11.7 -21.6 5 5 A S - 0 0 118 2,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.987 17.0-121.0-154.8 142.9 -16.2 -10.2 -18.9 6 6 A S - 0 0 120 -2,-0.3 2,-0.6 2,-0.0 -2,-0.0 -0.732 24.6-152.1 -88.7 127.2 -14.1 -7.0 -18.4 7 7 A G - 0 0 74 -2,-0.5 2,-0.5 2,-0.0 -2,-0.0 -0.879 5.9-162.1-104.6 121.6 -10.4 -7.6 -17.6 8 8 A M - 0 0 124 -2,-0.6 2,-0.3 1,-0.1 -2,-0.0 -0.887 10.3-161.8-104.9 124.1 -8.5 -5.0 -15.6 9 9 A K + 0 0 200 -2,-0.5 -1,-0.1 20,-0.0 20,-0.1 -0.230 43.8 141.1 -95.1 44.0 -4.7 -5.0 -15.7 10 10 A H - 0 0 67 -2,-0.3 2,-0.3 18,-0.2 21,-0.1 -0.220 56.3 -93.0 -79.2 173.4 -4.4 -2.9 -12.5 11 11 A Y E -A 30 0A 42 19,-2.2 19,-1.4 69,-0.0 2,-0.7 -0.647 28.5-136.7 -90.9 146.4 -1.9 -3.3 -9.7 12 12 A E E + b 0 80A 70 67,-1.9 69,-1.5 -2,-0.3 2,-0.6 -0.894 24.9 175.3-107.4 110.6 -2.5 -5.5 -6.7 13 13 A V E -Ab 27 81A 0 14,-1.8 14,-2.2 -2,-0.7 2,-0.9 -0.930 10.1-168.8-119.3 109.5 -1.4 -3.9 -3.4 14 14 A E E -Ab 26 82A 30 67,-1.5 2,-1.1 -2,-0.6 69,-0.8 -0.825 12.1-151.8-100.3 101.5 -2.2 -5.7 -0.2 15 15 A I E +Ab 25 83A 2 10,-1.7 9,-1.7 -2,-0.9 10,-1.0 -0.597 25.1 178.7 -75.3 100.7 -1.5 -3.5 2.8 16 16 A L E - b 0 84A 36 67,-2.2 69,-2.7 -2,-1.1 7,-0.2 -0.520 29.5 -97.8 -99.1 168.9 -0.7 -5.9 5.6 17 17 A D E - b 0 85A 26 5,-0.3 69,-0.1 67,-0.2 -1,-0.1 -0.480 16.1-135.3 -85.0 156.9 0.4 -5.3 9.2 18 18 A A S S+ 0 0 35 67,-1.7 -1,-0.1 -2,-0.1 68,-0.1 0.376 103.2 27.3 -90.7 3.2 4.0 -5.3 10.5 19 19 A K S S+ 0 0 172 66,-0.2 67,-0.1 3,-0.1 -1,-0.0 0.620 136.8 19.5-124.6 -65.0 2.9 -7.3 13.5 20 20 A T S S- 0 0 72 2,-0.1 3,-0.1 0, 0.0 -2,-0.1 0.489 86.1-144.1 -89.7 -4.8 -0.1 -9.5 12.9 21 21 A R + 0 0 167 1,-0.2 2,-0.4 64,-0.1 -3,-0.1 0.867 41.7 162.0 41.2 46.1 0.4 -9.2 9.1 22 22 A E - 0 0 109 1,-0.1 2,-0.3 -7,-0.0 -5,-0.3 -0.783 49.9 -99.6 -99.4 139.7 -3.4 -9.2 8.8 23 23 A K + 0 0 125 -2,-0.4 -7,-0.2 1,-0.2 3,-0.1 -0.381 49.4 162.7 -58.3 113.1 -5.2 -8.0 5.7 24 24 A L + 0 0 54 -9,-1.7 2,-0.3 1,-0.4 -1,-0.2 0.790 65.1 0.2-101.1 -40.1 -6.3 -4.4 6.4 25 25 A C E -A 15 0A 17 -10,-1.0 -10,-1.7 2,-0.0 2,-0.5 -0.989 55.8-155.5-153.7 142.9 -6.9 -3.1 2.9 26 26 A F E -A 14 0A 81 -2,-0.3 2,-0.8 -12,-0.2 -12,-0.2 -0.946 8.4-176.5-126.0 111.5 -6.8 -4.5 -0.6 27 27 A L E +A 13 0A 20 -14,-2.2 -14,-1.8 -2,-0.5 3,-0.5 -0.816 14.7 161.9-109.8 92.6 -6.3 -2.1 -3.6 28 28 A D E S+ 0 0 40 -2,-0.8 -18,-0.2 -16,-0.2 -1,-0.1 0.221 71.3 65.9 -91.8 13.7 -6.5 -4.0 -6.8 29 29 A K E S+ 0 0 137 -19,-0.1 2,-0.3 -16,-0.1 -1,-0.2 -0.233 70.9 131.0-128.0 43.6 -7.1 -0.8 -8.7 30 30 A V E -A 11 0A 2 -19,-1.4 -19,-2.2 -3,-0.5 3,-0.0 -0.755 54.9-119.5-100.5 145.7 -3.8 1.0 -8.2 31 31 A E - 0 0 81 -2,-0.3 3,-0.3 -21,-0.1 41,-0.3 -0.533 9.8-136.8 -83.2 148.1 -1.8 2.7 -11.0 32 32 A P S S+ 0 0 35 0, 0.0 41,-0.6 0, 0.0 40,-0.4 0.875 106.9 49.0 -69.7 -39.3 1.8 1.6 -11.8 33 33 A H S S+ 0 0 114 39,-0.2 2,-0.2 38,-0.1 -2,-0.0 0.566 87.3 117.0 -77.4 -8.5 3.0 5.2 -12.2 34 34 A A - 0 0 11 -3,-0.3 38,-1.7 37,-0.1 39,-0.2 -0.413 63.1-134.3 -64.2 129.6 1.3 6.0 -8.9 35 35 A T B >> -D 71 0B 36 36,-0.2 4,-1.6 -2,-0.2 3,-1.2 -0.508 25.1-103.9 -85.4 154.7 3.8 7.1 -6.2 36 36 A I H 3> S+ 0 0 1 34,-2.0 4,-1.6 32,-0.8 32,-0.2 0.852 121.2 63.3 -41.8 -42.9 3.8 5.8 -2.6 37 37 A A H 3> S+ 0 0 31 33,-0.3 4,-1.3 1,-0.2 3,-0.3 0.920 102.2 48.0 -49.8 -50.8 2.3 9.1 -1.6 38 38 A E H <> S+ 0 0 105 -3,-1.2 4,-1.8 1,-0.2 -1,-0.2 0.900 102.0 64.9 -58.6 -42.6 -0.8 8.5 -3.7 39 39 A I H X S+ 0 0 1 -4,-1.6 4,-1.7 1,-0.2 -1,-0.2 0.905 99.9 51.8 -46.4 -50.2 -1.1 5.0 -2.2 40 40 A K H X S+ 0 0 34 -4,-1.6 4,-1.6 -3,-0.3 -1,-0.2 0.940 103.5 57.3 -53.6 -52.4 -1.8 6.5 1.2 41 41 A N H X S+ 0 0 96 -4,-1.3 4,-1.5 1,-0.2 3,-0.5 0.898 104.4 54.1 -45.6 -48.9 -4.5 8.8 -0.2 42 42 A L H >X S+ 0 0 39 -4,-1.8 3,-1.4 1,-0.3 4,-0.7 0.966 103.7 52.0 -51.1 -63.4 -6.4 5.7 -1.4 43 43 A F H 3X S+ 0 0 2 -4,-1.7 4,-1.6 1,-0.3 -1,-0.3 0.798 106.9 58.3 -44.7 -31.6 -6.4 3.9 1.9 44 44 A T H 3< S+ 0 0 30 -4,-1.6 -1,-0.3 -3,-0.5 -2,-0.2 0.899 89.8 71.8 -67.6 -41.8 -7.9 7.2 3.2 45 45 A K H << S+ 0 0 158 -4,-1.5 -2,-0.2 -3,-1.4 -1,-0.2 0.903 107.8 32.7 -36.9 -68.1 -10.9 7.0 0.8 46 46 A T H < S+ 0 0 98 -4,-0.7 -1,-0.2 1,-0.3 -2,-0.2 0.964 131.8 34.6 -56.9 -57.1 -12.5 4.2 2.7 47 47 A H < + 0 0 73 -4,-1.6 3,-0.5 1,-0.2 -1,-0.3 -0.809 65.1 169.3-106.1 93.8 -11.3 5.3 6.1 48 48 A P S S+ 0 0 95 0, 0.0 -1,-0.2 0, 0.0 -3,-0.1 0.854 73.8 67.3 -69.7 -36.5 -11.2 9.1 6.2 49 49 A Q S S+ 0 0 162 -5,-0.1 2,-0.7 1,-0.1 -5,-0.1 0.803 89.0 78.7 -54.6 -29.9 -10.6 9.2 10.0 50 50 A W S S- 0 0 118 -3,-0.5 -3,-0.1 -6,-0.2 -1,-0.1 -0.743 73.6-160.1 -87.2 114.5 -7.2 7.7 9.2 51 51 A Y >> - 0 0 109 -2,-0.7 4,-1.5 1,-0.1 3,-1.1 -0.501 26.1-120.8 -91.5 161.9 -4.8 10.3 8.0 52 52 A P T 34 S+ 0 0 72 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.806 104.2 77.8 -69.8 -30.9 -1.5 9.7 6.0 53 53 A A T 34 S+ 0 0 91 1,-0.2 -3,-0.0 3,-0.1 3,-0.0 0.693 108.4 32.0 -52.9 -17.6 0.6 11.4 8.7 54 54 A R T <4 S+ 0 0 123 -3,-1.1 32,-0.2 2,-0.0 -1,-0.2 0.834 90.9 94.4-103.7 -62.1 0.1 8.1 10.6 55 55 A Q < - 0 0 10 -4,-1.5 2,-0.6 1,-0.1 32,-0.1 -0.074 60.3-164.1 -38.1 109.9 -0.1 5.3 8.0 56 56 A S - 0 0 15 30,-0.5 30,-0.6 9,-0.0 2,-0.3 -0.906 2.7-164.3-109.9 111.0 3.5 4.1 7.8 57 57 A L E +C 85 0A 7 -2,-0.6 9,-2.7 9,-0.2 2,-0.3 -0.706 9.4 177.9 -94.6 144.4 4.4 1.9 4.8 58 58 A R E -C 84 0A 52 26,-0.7 26,-1.4 -2,-0.3 7,-0.2 -0.977 36.3-136.3-149.3 131.8 7.6 -0.2 4.7 59 59 A L S S+ 0 0 56 5,-0.5 23,-0.1 -2,-0.3 6,-0.1 0.761 97.9 17.9 -55.6 -24.7 8.9 -2.6 2.0 60 60 A D S > S- 0 0 97 4,-0.4 3,-1.4 24,-0.1 -1,-0.1 -0.992 74.5-121.7-148.7 153.1 9.7 -4.9 4.9 61 61 A P T 3 S+ 0 0 52 0, 0.0 -2,-0.1 0, 0.0 -43,-0.0 0.574 118.5 37.9 -69.8 -8.8 8.7 -5.3 8.6 62 62 A K T 3 S+ 0 0 197 2,-0.1 -3,-0.0 -4,-0.0 -44,-0.0 -0.026 109.0 71.0-131.2 28.8 12.4 -4.9 9.5 63 63 A G S < S- 0 0 43 -3,-1.4 2,-0.2 1,-0.2 -5,-0.0 0.292 85.6 -73.6-111.8-122.1 13.4 -2.2 7.0 64 64 A K - 0 0 175 -2,-0.0 -5,-0.5 0, 0.0 -4,-0.4 -0.825 49.8 -73.6-138.8 177.3 12.6 1.5 6.8 65 65 A S - 0 0 57 -2,-0.2 -7,-0.2 -7,-0.2 -9,-0.0 -0.574 49.3-121.8 -78.7 135.6 9.8 3.8 5.9 66 66 A L - 0 0 15 -9,-2.7 2,-0.4 -2,-0.3 -9,-0.2 -0.309 22.4-144.4 -73.2 159.0 8.9 4.2 2.3 67 67 A K > - 0 0 115 1,-0.1 3,-2.8 -2,-0.0 -31,-0.4 -0.969 25.5-113.3-129.1 143.9 9.0 7.6 0.5 68 68 A D T 3 S+ 0 0 80 -2,-0.4 -32,-0.8 1,-0.3 -30,-0.1 0.847 110.6 75.9 -37.1 -46.4 6.8 9.0 -2.3 69 69 A E T 3 S+ 0 0 146 -34,-0.1 -1,-0.3 -33,-0.1 -3,-0.0 0.835 81.9 83.8 -35.0 -46.4 9.9 8.9 -4.5 70 70 A D < - 0 0 39 -3,-2.8 -34,-2.0 -35,-0.1 2,-0.3 -0.266 69.1-159.8 -62.1 147.9 9.3 5.1 -4.7 71 71 A V B > -D 35 0B 15 -36,-0.2 4,-3.2 -35,-0.1 3,-0.2 -0.927 32.5-116.5-131.6 156.0 6.8 4.0 -7.3 72 72 A L T 4 S+ 0 0 1 -38,-1.7 -39,-0.2 -40,-0.4 -37,-0.1 0.616 123.2 38.6 -64.2 -10.6 4.7 0.8 -7.9 73 73 A Q T 4 S+ 0 0 98 -41,-0.6 -1,-0.2 -39,-0.2 -40,-0.1 0.577 118.1 46.7-112.0 -19.4 6.8 0.4 -11.1 74 74 A K T 4 S+ 0 0 153 -42,-0.3 -2,-0.2 -3,-0.2 -4,-0.1 0.744 91.2 97.4 -93.2 -28.9 10.1 1.5 -9.7 75 75 A L S < S- 0 0 9 -4,-3.2 2,-0.4 1,-0.1 -3,-0.0 -0.160 93.1-104.9 -59.5 154.9 10.0 -0.5 -6.5 76 76 A P S S+ 0 0 117 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.137 96.7 88.9 -69.8 24.9 11.8 -3.9 -6.4 77 77 A V - 0 0 54 -2,-0.4 4,-0.2 1,-0.1 2,-0.1 -0.712 66.7-137.7-119.1 170.9 8.3 -5.5 -6.7 78 78 A G - 0 0 42 2,-0.5 -1,-0.1 -2,-0.2 -3,-0.1 -0.073 58.4 -48.0-107.6-151.2 6.0 -6.5 -9.6 79 79 A T S S+ 0 0 82 1,-0.2 -67,-1.9 -68,-0.1 2,-1.0 0.864 129.7 59.8 -51.5 -39.2 2.3 -6.3 -10.3 80 80 A T E S-b 12 0A 56 -69,-0.2 -2,-0.5 -67,-0.1 2,-0.3 -0.784 76.7-177.1 -97.5 96.6 1.6 -7.6 -6.8 81 81 A A E -b 13 0A 0 -69,-1.5 -67,-1.5 -2,-1.0 2,-0.5 -0.666 12.2-151.6 -94.1 148.7 3.2 -5.2 -4.4 82 82 A T E -b 14 0A 45 -2,-0.3 2,-0.4 -69,-0.2 -67,-0.2 -0.978 11.3-174.0-125.0 125.0 3.2 -5.7 -0.6 83 83 A L E -b 15 0A 1 -69,-0.8 -67,-2.2 -2,-0.5 2,-0.5 -0.931 14.5-142.3-119.5 141.5 3.2 -2.9 2.0 84 84 A Y E -bC 16 58A 37 -26,-1.4 -26,-0.7 -2,-0.4 2,-0.3 -0.867 13.0-146.0-105.3 132.5 3.5 -3.1 5.7 85 85 A F E -bC 17 57A 28 -69,-2.7 -67,-1.7 -2,-0.5 2,-0.4 -0.723 10.1-165.7 -97.2 145.8 1.6 -0.8 8.1 86 86 A R - 0 0 128 -30,-0.6 -30,-0.5 -2,-0.3 2,-0.1 -0.966 20.4-127.4-136.0 118.4 3.0 0.5 11.4 87 87 A D 0 0 105 -2,-0.4 -32,-0.1 -32,-0.1 -33,-0.0 -0.403 360.0 360.0 -64.1 131.5 0.8 2.1 14.1 88 88 A L 0 0 114 -2,-0.1 -1,-0.1 0, 0.0 -33,-0.0 -0.835 360.0 360.0 -99.0 360.0 2.3 5.5 15.2