==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-SEP-06 2DZQ . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,T.TOMIZAWA,S.KOSHIBA,T.KIGAWA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7225.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 55.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 29.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G > 0 0 57 0, 0.0 3,-0.5 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 144.6 0.8 14.5 -15.2 2 2 A S T 3 - 0 0 125 1,-0.2 3,-0.1 3,-0.0 0, 0.0 -0.424 360.0 -0.9 -61.9 121.5 1.3 18.3 -15.0 3 3 A S T 3 S+ 0 0 128 -2,-0.3 2,-0.3 1,-0.1 -1,-0.2 0.996 138.8 2.5 59.2 71.0 4.7 19.1 -16.4 4 4 A G S < S- 0 0 61 -3,-0.5 2,-0.3 2,-0.0 -1,-0.1 -0.765 96.3 -61.5 121.8-167.5 5.9 15.6 -17.2 5 5 A S - 0 0 108 -2,-0.3 2,-3.0 -3,-0.1 3,-0.1 -0.856 52.0 -93.8-120.2 155.4 4.4 12.1 -17.0 6 6 A S > + 0 0 33 -2,-0.3 3,-1.0 1,-0.2 4,-0.3 -0.382 53.6 162.6 -66.6 73.7 3.2 10.1 -14.1 7 7 A G T 3> + 0 0 42 -2,-3.0 4,-1.6 1,-0.2 -1,-0.2 0.481 56.1 87.9 -73.2 -2.3 6.6 8.4 -13.7 8 8 A L H 3> S+ 0 0 10 1,-0.2 4,-4.3 2,-0.2 5,-0.3 0.918 73.4 68.2 -61.4 -45.3 5.4 7.4 -10.3 9 9 A R H <> S+ 0 0 110 -3,-1.0 4,-3.1 1,-0.3 -1,-0.2 0.889 103.4 43.5 -38.1 -58.4 3.8 4.2 -11.7 10 10 A K H > S+ 0 0 153 -4,-0.3 4,-2.1 1,-0.2 -1,-0.3 0.926 116.7 48.0 -55.4 -48.5 7.3 2.8 -12.4 11 11 A Q H X S+ 0 0 113 -4,-1.6 4,-2.5 2,-0.2 -2,-0.2 0.951 111.4 49.3 -57.1 -54.1 8.5 4.0 -9.0 12 12 A V H X S+ 0 0 0 -4,-4.3 4,-2.9 1,-0.2 5,-0.3 0.946 106.6 56.1 -49.7 -57.1 5.5 2.6 -7.2 13 13 A E H X S+ 0 0 72 -4,-3.1 4,-3.7 -5,-0.3 5,-0.3 0.888 108.8 47.3 -41.2 -52.4 6.0 -0.8 -9.0 14 14 A L H X S+ 0 0 98 -4,-2.1 4,-4.1 2,-0.2 5,-0.3 0.918 113.2 49.7 -57.1 -46.3 9.5 -0.9 -7.6 15 15 A L H X S+ 0 0 10 -4,-2.5 4,-3.8 2,-0.2 -2,-0.2 0.981 117.3 38.1 -55.6 -64.2 8.2 0.1 -4.2 16 16 A F H X S+ 0 0 0 -4,-2.9 4,-3.2 2,-0.2 -2,-0.2 0.945 122.1 44.1 -51.9 -56.8 5.5 -2.6 -4.1 17 17 A N H X S+ 0 0 29 -4,-3.7 4,-2.1 -5,-0.3 13,-1.2 0.952 115.5 48.2 -53.4 -55.7 7.7 -5.1 -5.9 18 18 A T H X S+ 0 0 43 -4,-4.1 4,-1.3 -5,-0.3 -1,-0.2 0.918 112.2 49.5 -50.7 -50.3 10.7 -4.3 -3.7 19 19 A R H >X S+ 0 0 47 -4,-3.8 4,-1.1 -5,-0.3 3,-0.5 0.919 106.3 56.3 -55.6 -47.9 8.5 -4.5 -0.6 20 20 A Y H >X S+ 0 0 16 -4,-3.2 3,-1.1 1,-0.3 4,-0.9 0.888 98.5 62.0 -51.2 -44.7 7.1 -7.8 -1.7 21 21 A A H >X>S+ 0 0 0 -4,-2.1 5,-4.1 1,-0.3 3,-2.0 0.912 101.8 50.6 -47.6 -50.3 10.7 -9.1 -1.9 22 22 A K H <<5S+ 0 0 156 -4,-1.3 -1,-0.3 -3,-0.5 -2,-0.2 0.791 105.5 57.7 -59.0 -28.2 11.0 -8.5 1.9 23 23 A A H <<5S+ 0 0 30 -4,-1.1 -1,-0.3 -3,-1.1 -2,-0.2 0.655 117.1 33.3 -75.5 -16.5 7.8 -10.4 2.2 24 24 A I H <<5S- 0 0 75 -3,-2.0 -2,-0.3 -4,-0.9 -1,-0.2 0.277 119.6-107.7-118.2 3.7 9.6 -13.3 0.5 25 25 A G T <5S+ 0 0 70 -4,-0.7 2,-0.3 1,-0.3 -3,-0.3 0.794 72.5 145.4 72.3 29.8 13.0 -12.5 2.0 26 26 A I < - 0 0 64 -5,-4.1 -1,-0.3 -6,-0.2 -2,-0.1 -0.734 45.9-155.0-100.9 149.7 14.2 -11.3 -1.4 27 27 A S S S+ 0 0 128 -2,-0.3 -1,-0.1 -3,-0.1 -5,-0.1 0.832 78.7 60.7 -88.4 -39.1 16.7 -8.5 -1.8 28 28 A E S S- 0 0 132 1,-0.1 2,-0.2 -7,-0.1 -2,-0.1 -0.405 99.9 -86.8 -86.7 165.7 15.6 -7.6 -5.4 29 29 A P - 0 0 53 0, 0.0 2,-0.3 0, 0.0 -11,-0.3 -0.508 46.5-169.5 -75.0 138.9 12.1 -6.4 -6.4 30 30 A V - 0 0 36 -13,-1.2 -10,-0.2 -2,-0.2 -9,-0.2 -0.807 30.0 -84.5-124.9 165.9 9.6 -9.1 -7.2 31 31 A K - 0 0 170 -2,-0.3 -1,-0.1 -11,-0.1 -18,-0.0 -0.353 37.8-135.6 -69.0 149.8 6.1 -9.2 -8.8 32 32 A V - 0 0 13 -2,-0.1 2,-2.5 -12,-0.0 3,-0.2 -0.948 4.6-142.3-114.5 116.0 3.1 -8.5 -6.6 33 33 A P > + 0 0 32 0, 0.0 4,-1.8 0, 0.0 3,-0.5 -0.444 25.3 178.1 -75.0 71.0 0.1 -10.8 -7.0 34 34 A Y H >> S+ 0 0 35 -2,-2.5 4,-2.5 1,-0.3 3,-1.0 0.885 77.5 55.4 -37.3 -59.8 -2.4 -8.0 -6.5 35 35 A S H 3>>S+ 0 0 57 1,-0.3 4,-4.0 2,-0.3 5,-0.7 0.900 104.1 53.7 -40.7 -56.3 -5.3 -10.4 -7.0 36 36 A K H 3>5S+ 0 0 21 -3,-0.5 4,-1.0 1,-0.3 8,-0.4 0.876 115.5 40.6 -47.5 -42.8 -3.9 -12.6 -4.3 37 37 A F H <<5S+ 0 0 5 -4,-1.8 -1,-0.3 -3,-1.0 -2,-0.3 0.715 118.4 49.2 -78.6 -22.9 -4.0 -9.5 -2.1 38 38 A L H <5S+ 0 0 75 -4,-2.5 -2,-0.2 -3,-0.5 -3,-0.2 0.956 118.3 35.1 -79.1 -57.5 -7.3 -8.5 -3.6 39 39 A M H <5S+ 0 0 119 -4,-4.0 -3,-0.2 1,-0.3 -2,-0.2 0.730 131.5 37.4 -68.4 -22.8 -9.1 -11.8 -3.2 40 40 A H X< + 0 0 33 -4,-1.0 4,-3.2 -5,-0.7 -1,-0.3 -0.587 66.4 146.2-130.4 68.9 -7.3 -12.3 0.0 41 41 A P T 4 S+ 0 0 80 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.721 78.1 53.0 -75.0 -22.7 -7.0 -8.9 1.7 42 42 A E T 4 S+ 0 0 153 -3,-0.1 3,-0.2 -4,-0.1 -2,-0.1 0.762 120.4 32.2 -81.5 -28.0 -7.2 -10.6 5.1 43 43 A E T 4 S+ 0 0 47 1,-0.3 38,-1.0 -7,-0.2 2,-0.6 0.895 129.3 30.7 -92.2 -54.5 -4.4 -12.9 4.2 44 44 A L E < S+A 80 0A 0 -4,-3.2 -1,-0.3 -8,-0.4 2,-0.3 -0.946 80.9 133.3-113.3 118.9 -2.2 -10.8 2.0 45 45 A F E -A 79 0A 54 34,-1.7 34,-1.1 -2,-0.6 2,-0.4 -0.873 46.2-111.5-149.8-179.9 -2.2 -7.1 2.5 46 46 A V E -A 78 0A 20 -2,-0.3 2,-0.3 32,-0.2 32,-0.2 -0.970 23.1-162.0-125.8 139.6 0.0 -4.0 2.8 47 47 A V E +A 77 0A 58 30,-3.8 30,-1.2 -2,-0.4 7,-0.0 -0.865 67.9 40.4-119.7 153.8 0.7 -1.9 5.9 48 48 A G S S+ 0 0 40 -2,-0.3 28,-0.4 1,-0.3 27,-0.1 0.001 75.2 144.9 100.8 -26.3 2.1 1.6 6.3 49 49 A L - 0 0 28 26,-0.2 -1,-0.3 28,-0.2 3,-0.1 0.050 52.4-105.0 -41.2 154.9 0.2 2.8 3.3 50 50 A P > - 0 0 28 0, 0.0 3,-0.9 0, 0.0 2,-0.3 0.018 48.4 -67.8 -74.9-173.1 -1.1 6.4 3.5 51 51 A E T 3 S+ 0 0 187 1,-0.2 3,-0.1 3,-0.0 17,-0.0 -0.581 118.2 13.9 -81.9 141.6 -4.6 7.6 4.2 52 52 A G T 3 S+ 0 0 61 -2,-0.3 2,-0.3 1,-0.2 -1,-0.2 0.797 110.8 101.9 65.5 29.7 -7.2 7.0 1.5 53 53 A I < + 0 0 22 -3,-0.9 -1,-0.2 8,-0.0 2,-0.2 -0.997 39.8 159.2-145.9 142.0 -4.9 4.6 -0.2 54 54 A S - 0 0 80 -2,-0.3 2,-0.6 -3,-0.1 -7,-0.0 -0.446 51.1 -50.6-135.9-151.7 -4.6 0.8 -0.3 55 55 A L S S+ 0 0 13 -2,-0.2 2,-0.3 -18,-0.1 -9,-0.0 -0.873 76.0 116.8-100.8 118.6 -3.1 -1.9 -2.5 56 56 A R - 0 0 144 -2,-0.6 5,-0.1 -18,-0.0 -22,-0.0 -0.972 68.3 -51.5-168.3 168.3 -3.9 -1.6 -6.2 57 57 A R >> - 0 0 179 -2,-0.3 2,-2.6 1,-0.2 4,-0.8 -0.208 53.1-119.2 -51.6 135.3 -2.4 -1.1 -9.6 58 58 A P T 34 S+ 0 0 6 0, 0.0 -1,-0.2 0, 0.0 -45,-0.1 -0.269 106.7 56.3 -75.0 53.8 -0.1 1.9 -9.7 59 59 A N T 34 S+ 0 0 97 -2,-2.6 4,-0.1 -50,-0.1 7,-0.1 0.405 89.3 62.1-146.0 -47.0 -2.4 3.5 -12.4 60 60 A C T <4 S+ 0 0 98 -3,-0.7 -3,-0.0 2,-0.1 2,-0.0 0.807 97.7 80.6 -58.3 -29.4 -5.9 3.6 -11.0 61 61 A F S < S- 0 0 30 -4,-0.8 2,-0.3 1,-0.1 -52,-0.1 -0.192 86.5-112.0 -73.4 169.1 -4.4 5.9 -8.4 62 62 A G > - 0 0 31 1,-0.1 4,-3.7 -2,-0.0 3,-0.3 -0.738 25.1-108.3-105.4 154.0 -3.6 9.6 -8.9 63 63 A I H > S+ 0 0 63 -2,-0.3 4,-3.3 1,-0.3 5,-0.2 0.904 123.2 51.1 -40.1 -57.8 -0.3 11.3 -9.1 64 64 A A H > S+ 0 0 71 1,-0.2 4,-2.6 2,-0.2 -1,-0.3 0.910 115.5 42.9 -47.1 -50.1 -0.9 12.9 -5.7 65 65 A K H > S+ 0 0 98 -3,-0.3 4,-2.5 2,-0.2 5,-0.3 0.976 110.0 54.8 -60.8 -58.6 -1.7 9.4 -4.4 66 66 A L H X S+ 0 0 3 -4,-3.7 4,-2.6 1,-0.2 -2,-0.2 0.886 111.3 47.3 -40.1 -51.9 1.2 7.7 -6.2 67 67 A R H X S+ 0 0 133 -4,-3.3 4,-3.2 -5,-0.3 5,-0.3 0.961 107.4 55.0 -55.8 -57.5 3.5 10.2 -4.5 68 68 A K H X S+ 0 0 116 -4,-2.6 4,-2.0 1,-0.3 3,-0.3 0.910 110.6 46.0 -40.3 -59.5 1.9 9.7 -1.1 69 69 A I H >< S+ 0 0 0 -4,-2.5 3,-0.6 1,-0.3 7,-0.3 0.928 113.1 49.2 -50.5 -51.7 2.6 6.0 -1.4 70 70 A L H >< S+ 0 0 41 -4,-2.6 3,-0.9 -5,-0.3 4,-0.3 0.830 111.9 50.2 -57.4 -33.0 6.1 6.7 -2.6 71 71 A E H 3< S+ 0 0 150 -4,-3.2 -1,-0.3 -3,-0.3 -2,-0.3 0.750 113.0 45.5 -76.2 -25.6 6.4 9.1 0.4 72 72 A A T + 0 0 129 -39,-0.2 3,-1.1 -42,-0.1 4,-0.4 -0.813 55.4 170.0-136.9 93.8 -1.1 -17.0 3.8 83 83 A P G >> S+ 0 0 76 0, 0.0 4,-1.1 0, 0.0 3,-0.5 0.646 71.2 82.6 -75.1 -15.9 1.5 -17.4 0.9 84 84 A E G 34 S+ 0 0 123 1,-0.3 -2,-0.0 2,-0.2 0, 0.0 0.744 84.2 61.6 -58.7 -23.8 -0.3 -20.6 0.0 85 85 A L G <4 S+ 0 0 13 -3,-1.1 -1,-0.3 1,-0.2 -48,-0.0 0.919 92.9 61.4 -68.5 -45.4 -2.7 -18.4 -1.8 86 86 A L T <4 S+ 0 0 39 -3,-0.5 2,-1.5 -4,-0.4 -1,-0.2 0.894 96.6 65.5 -46.4 -47.1 -0.0 -17.1 -4.1 87 87 A T S < S+ 0 0 110 -4,-1.1 2,-0.3 2,-0.0 -1,-0.2 -0.651 79.7 119.8 -83.1 89.5 0.4 -20.7 -5.3 88 88 A E + 0 0 122 -2,-1.5 2,-0.2 2,-0.0 -3,-0.0 -0.990 24.9 148.7-151.6 152.0 -2.9 -21.3 -7.0 89 89 A G - 0 0 72 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.834 42.9 -74.7-159.7-164.9 -4.2 -22.2 -10.4 90 90 A V + 0 0 145 -2,-0.2 2,-0.3 0, 0.0 -2,-0.0 -0.850 40.7 177.3-112.5 148.1 -7.0 -24.0 -12.4 91 91 A K - 0 0 176 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.872 30.1 -98.9-140.8 171.8 -7.4 -27.7 -12.8 92 92 A E - 0 0 169 -2,-0.3 2,-0.1 1,-0.1 0, 0.0 -0.728 38.0-110.8 -98.2 146.5 -9.8 -30.2 -14.4 93 93 A P - 0 0 121 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.451 34.1-110.1 -75.0 146.3 -12.5 -32.1 -12.5 94 94 A S - 0 0 119 -2,-0.1 3,-0.0 1,-0.1 0, 0.0 -0.536 31.7-135.5 -77.8 140.9 -12.2 -35.8 -12.0 95 95 A G - 0 0 63 -2,-0.2 3,-0.1 1,-0.1 -1,-0.1 -0.399 12.8-121.3 -91.4 170.5 -14.6 -38.0 -13.9 96 96 A P S S- 0 0 135 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.956 80.5 -32.7 -75.0 -54.8 -16.5 -41.1 -12.7 97 97 A S - 0 0 107 -3,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.977 54.8-121.6-163.0 161.3 -15.1 -43.6 -15.1 98 98 A S 0 0 127 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.858 360.0 360.0-113.4 148.0 -13.8 -44.0 -18.7 99 99 A G 0 0 126 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.877 360.0 360.0 96.8 360.0 -15.2 -46.3 -21.4