==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 30-SEP-06 2DZR . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN- . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,Y.MUTO,S.YOKOYAMA,RIKEN STRUCTURAL . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7604.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 26 26.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.2 20.3 -4.2 -5.9 2 2 A S - 0 0 120 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.569 360.0-166.1-104.5 169.7 19.1 -1.4 -8.2 3 3 A S + 0 0 71 -2,-0.2 2,-0.3 2,-0.0 0, 0.0 -0.970 8.8 175.6-151.9 161.8 15.7 0.0 -8.8 4 4 A G - 0 0 58 -2,-0.3 2,-0.3 7,-0.0 -2,-0.0 -0.886 5.8-168.5-171.5 138.5 13.8 2.3 -11.2 5 5 A S - 0 0 50 -2,-0.3 2,-0.1 9,-0.0 3,-0.1 -0.895 7.9-169.2-130.8 159.9 10.3 3.5 -11.8 6 6 A S + 0 0 110 -2,-0.3 4,-0.1 1,-0.3 2,-0.1 -0.608 63.5 21.5-152.4 83.5 8.5 5.4 -14.5 7 7 A G S > S- 0 0 44 -2,-0.1 4,-3.2 1,-0.1 -1,-0.3 -0.165 80.1 -98.2 128.6 138.2 5.0 6.6 -13.7 8 8 A L H >> S+ 0 0 56 1,-0.2 4,-2.2 2,-0.2 3,-0.6 0.938 124.3 45.8 -42.2 -72.0 3.0 7.3 -10.6 9 9 A R H 3> S+ 0 0 128 1,-0.3 4,-4.5 2,-0.2 5,-0.3 0.867 113.2 52.4 -38.8 -50.2 1.2 4.0 -10.6 10 10 A E H 3> S+ 0 0 87 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.919 106.8 52.5 -54.1 -48.5 4.6 2.4 -11.2 11 11 A Q H S+ 0 0 0 -4,-2.2 4,-1.5 2,-0.3 5,-0.6 0.972 110.5 60.6 -66.4 -56.4 3.3 3.0 -6.0 13 13 A Q H <5S+ 0 0 58 -4,-4.5 -1,-0.2 1,-0.3 -2,-0.2 0.758 116.2 37.8 -41.8 -28.0 3.0 -0.4 -7.7 14 14 A D H X5S+ 0 0 41 -4,-1.6 4,-4.2 -5,-0.3 5,-0.3 0.836 109.0 62.5 -91.8 -41.9 6.6 -0.7 -6.6 15 15 A L H X5S+ 0 0 26 -4,-2.6 4,-3.3 1,-0.3 5,-0.4 0.955 105.6 44.0 -45.6 -71.8 6.2 1.0 -3.3 16 16 A F H X5S+ 0 0 9 -4,-1.5 4,-1.2 1,-0.2 -1,-0.3 0.772 119.0 49.4 -45.5 -29.6 3.8 -1.5 -1.8 17 17 A N H >X S+ 0 0 110 -4,-4.2 3,-0.8 1,-0.3 4,-0.8 0.926 113.0 55.7 -47.6 -53.6 9.5 -2.7 -2.0 19 19 A K H >X S+ 0 0 40 -4,-3.3 3,-2.3 -5,-0.3 4,-1.8 0.896 96.6 66.8 -45.8 -48.1 7.8 -2.1 1.4 20 20 A Y H 3X S+ 0 0 18 -4,-1.2 4,-2.4 -5,-0.4 5,-0.4 0.884 90.8 60.8 -38.7 -56.6 6.8 -5.7 1.4 21 21 A G H S+ 0 0 3 -4,-1.1 4,-1.9 -3,-0.8 5,-0.7 0.820 108.8 45.4 -41.8 -38.7 10.5 -6.7 1.7 22 22 A E H <<5S+ 0 0 92 -3,-2.3 -1,-0.2 -4,-0.8 -2,-0.2 0.955 104.4 58.2 -71.6 -53.2 10.5 -4.8 4.9 23 23 A A H <5S+ 0 0 31 -4,-1.8 57,-0.3 1,-0.3 -2,-0.2 0.836 120.1 33.2 -44.6 -37.5 7.2 -6.2 6.3 24 24 A L H <5S- 0 0 21 -4,-2.4 61,-0.5 -5,-0.2 -1,-0.3 0.770 115.1-119.8 -89.0 -31.6 9.0 -9.5 5.9 25 25 A G T <5 + 0 0 13 -4,-1.9 -3,-0.2 -5,-0.4 -4,-0.1 0.130 62.2 145.6 111.0 -16.5 12.4 -8.1 6.7 26 26 A I < - 0 0 26 -5,-0.7 -1,-0.3 -6,-0.2 61,-0.1 0.072 44.7-146.7 -46.2 165.1 13.9 -9.1 3.4 27 27 A K S S+ 0 0 182 -3,-0.1 -1,-0.1 2,-0.1 -5,-0.1 0.684 75.4 69.0-107.9 -32.0 16.5 -6.8 2.0 28 28 A Y S S- 0 0 131 -7,-0.1 2,-0.6 1,-0.1 -2,-0.0 -0.428 99.0 -86.8 -87.3 164.0 15.8 -7.4 -1.7 29 29 A P - 0 0 77 0, 0.0 2,-0.3 0, 0.0 -11,-0.1 -0.607 50.1-170.2 -75.0 116.6 12.7 -6.3 -3.6 30 30 A V - 0 0 29 -2,-0.6 -9,-0.3 -13,-0.4 2,-0.3 -0.693 21.0-111.7-105.8 159.6 10.0 -8.9 -3.2 31 31 A Q - 0 0 152 -2,-0.3 -17,-0.1 -11,-0.1 -1,-0.0 -0.632 26.4-122.7 -91.3 149.1 6.7 -9.2 -5.1 32 32 A V - 0 0 8 -2,-0.3 2,-2.4 1,-0.1 3,-0.2 -0.765 20.3-121.6 -94.2 135.2 3.3 -8.7 -3.4 33 33 A P > + 0 0 40 0, 0.0 4,-2.5 0, 0.0 5,-0.2 -0.469 44.5 163.6 -74.9 74.0 0.8 -11.5 -3.5 34 34 A Y H > S+ 0 0 57 -2,-2.4 4,-2.3 2,-0.2 5,-0.2 0.942 71.7 52.4 -56.3 -52.7 -1.9 -9.4 -5.2 35 35 A K H >> S+ 0 0 173 1,-0.3 4,-3.4 2,-0.3 3,-1.3 0.955 115.2 39.6 -47.2 -65.1 -3.9 -12.5 -6.2 36 36 A R H 3> S+ 0 0 189 1,-0.3 4,-2.7 2,-0.2 -1,-0.3 0.825 115.1 55.2 -55.0 -33.4 -4.0 -13.9 -2.8 37 37 A I H 3< S+ 0 0 29 -4,-2.5 -1,-0.3 2,-0.2 -2,-0.3 0.772 113.8 41.7 -70.5 -26.8 -4.5 -10.4 -1.5 38 38 A K H << S+ 0 0 157 -4,-2.3 -2,-0.2 -3,-1.3 -3,-0.2 0.938 120.4 39.0 -83.2 -55.9 -7.5 -10.2 -3.8 39 39 A S H < S+ 0 0 114 -4,-3.4 -3,-0.2 1,-0.2 -2,-0.2 0.910 129.8 33.3 -60.2 -44.8 -9.0 -13.6 -3.2 40 40 A N < - 0 0 83 -4,-2.7 3,-0.3 -5,-0.4 -1,-0.2 -0.958 61.7-174.1-120.2 113.5 -8.1 -13.4 0.5 41 41 A P S S+ 0 0 97 0, 0.0 2,-0.9 0, 0.0 3,-0.2 0.704 80.6 74.8 -75.0 -21.3 -8.3 -9.9 2.1 42 42 A G S S+ 0 0 53 1,-0.2 3,-0.1 -6,-0.1 -5,-0.1 -0.234 77.3 86.1 -86.0 45.6 -6.9 -11.4 5.3 43 43 A S S S+ 0 0 22 -2,-0.9 38,-0.8 -3,-0.3 2,-0.5 0.805 96.6 5.4-105.2 -70.9 -3.4 -11.6 3.7 44 44 A V E -A 80 0A 5 -3,-0.2 2,-0.4 36,-0.1 -1,-0.3 -0.985 67.5-145.2-125.2 124.4 -1.5 -8.4 4.2 45 45 A I E -A 79 0A 86 34,-1.1 34,-1.4 -2,-0.5 2,-0.5 -0.726 11.7-159.1 -89.9 134.2 -2.9 -5.5 6.2 46 46 A I E +A 78 0A 14 -2,-0.4 2,-0.3 32,-0.2 32,-0.2 -0.966 20.1 160.9-118.1 123.5 -2.1 -2.0 5.0 47 47 A E E +A 77 0A 137 30,-2.1 30,-3.7 -2,-0.5 -2,-0.0 -0.895 47.3 53.2-136.4 164.9 -2.3 0.9 7.4 48 48 A G S S+ 0 0 32 -2,-0.3 28,-0.4 28,-0.3 27,-0.2 0.253 71.8 149.3 93.3 -10.3 -1.0 4.5 7.6 49 49 A L - 0 0 27 26,-0.2 -1,-0.2 28,-0.1 6,-0.1 0.027 52.9 -89.6 -49.7 164.3 -2.5 5.2 4.2 50 50 A P > - 0 0 11 0, 0.0 3,-1.5 0, 0.0 2,-0.4 -0.208 51.9 -79.4 -75.0 169.5 -3.6 8.8 3.5 51 51 A P T 3 S+ 0 0 117 0, 0.0 17,-0.0 0, 0.0 -2,-0.0 -0.591 119.0 18.3 -75.1 122.6 -7.2 10.1 4.2 52 52 A G T 3 S+ 0 0 72 -2,-0.4 13,-0.1 1,-0.1 -3,-0.0 0.293 104.9 97.6 100.7 -6.3 -9.5 9.1 1.4 53 53 A I < - 0 0 5 -3,-1.5 -1,-0.1 12,-0.1 8,-0.0 -0.897 58.3-166.1-120.0 99.8 -7.2 6.3 0.2 54 54 A P - 0 0 80 0, 0.0 2,-1.6 0, 0.0 -7,-0.1 -0.118 42.0 -77.6 -75.0 176.6 -8.2 2.9 1.6 55 55 A F S S+ 0 0 60 -9,-0.2 2,-0.3 -6,-0.1 -9,-0.1 -0.609 88.7 110.1 -80.5 86.8 -6.0 -0.2 1.6 56 56 A R S S- 0 0 175 -2,-1.6 5,-0.0 1,-0.1 -3,-0.0 -0.849 73.2 -59.3-146.4-179.9 -6.5 -1.3 -2.0 57 57 A K > - 0 0 83 -2,-0.3 3,-0.7 1,-0.1 4,-0.1 -0.320 38.7-130.8 -66.3 149.5 -4.7 -1.6 -5.3 58 58 A P G > S+ 0 0 5 0, 0.0 3,-1.1 0, 0.0 8,-0.1 0.635 102.0 76.6 -75.1 -15.0 -3.3 1.6 -6.9 59 59 A C G 3 S+ 0 0 63 1,-0.3 -50,-0.0 -50,-0.1 -2,-0.0 0.864 95.2 48.3 -61.8 -36.5 -5.0 0.7 -10.1 60 60 A T G < S+ 0 0 101 -3,-0.7 2,-0.4 2,-0.1 -1,-0.3 0.511 104.0 82.8 -80.4 -5.7 -8.2 1.8 -8.5 61 61 A F S < S- 0 0 18 -3,-1.1 2,-0.1 -4,-0.1 -52,-0.1 -0.808 75.7-133.6-103.6 142.3 -6.4 5.0 -7.5 62 62 A G > - 0 0 40 -2,-0.4 4,-3.2 1,-0.1 5,-0.2 -0.403 35.4 -94.6 -88.0 166.8 -5.9 8.0 -9.7 63 63 A S H > S+ 0 0 72 1,-0.2 4,-3.4 2,-0.2 5,-0.2 0.847 127.9 54.4 -46.2 -39.3 -2.7 10.0 -10.2 64 64 A Q H > S+ 0 0 142 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.977 109.0 43.8 -59.8 -59.9 -4.0 12.3 -7.5 65 65 A N H >> S+ 0 0 48 1,-0.2 4,-2.4 2,-0.2 3,-0.7 0.902 115.8 51.2 -51.8 -45.4 -4.6 9.5 -4.9 66 66 A L H 3X>S+ 0 0 5 -4,-3.2 4,-1.9 1,-0.3 5,-0.6 0.975 99.8 60.1 -55.8 -61.3 -1.2 8.1 -5.9 67 67 A E H 3<5S+ 0 0 133 -4,-3.4 4,-0.3 1,-0.3 -1,-0.3 0.772 111.4 45.5 -37.1 -32.5 0.6 11.4 -5.5 68 68 A R H XX5S+ 0 0 130 -4,-1.3 4,-2.4 -3,-0.7 3,-0.9 0.951 108.8 52.1 -78.0 -55.0 -0.6 11.1 -1.9 69 69 A I H 3X5S+ 0 0 0 -4,-2.4 4,-0.5 1,-0.3 7,-0.2 0.941 109.6 48.8 -44.5 -64.2 0.2 7.5 -1.3 70 70 A L H 3<5S+ 0 0 35 -4,-1.9 -1,-0.3 1,-0.3 3,-0.3 0.779 110.9 56.5 -48.0 -27.9 3.8 8.0 -2.4 71 71 A A H X4X S+ 0 0 29 -4,-2.4 4,-2.7 1,-0.2 3,-0.7 0.143 84.2 123.9 -89.6 18.4 2.6 8.9 3.0 73 73 A A T 3< S+ 0 0 14 -4,-0.5 -1,-0.2 -5,-0.3 -2,-0.1 0.782 75.9 52.5 -48.1 -28.2 4.6 6.0 1.5 74 74 A D T <4 S+ 0 0 110 -3,-0.6 -1,-0.3 -4,-0.2 -2,-0.1 0.883 107.3 49.6 -75.5 -41.1 6.4 6.1 4.8 75 75 A K T <4 S+ 0 0 140 -3,-0.7 -26,-0.2 -6,-0.2 -2,-0.2 0.946 86.6 99.6 -61.8 -50.6 3.1 5.9 6.8 76 76 A I < - 0 0 3 -4,-2.7 2,-0.4 -28,-0.4 -28,-0.3 -0.114 57.3-173.2 -41.1 121.7 1.9 3.0 4.8 77 77 A K E -A 47 0A 135 -30,-3.7 -30,-2.1 2,-0.0 2,-0.2 -0.983 9.1-153.6-130.2 120.2 2.6 -0.0 7.0 78 78 A F E -A 46 0A 15 -2,-0.4 2,-0.4 -32,-0.2 -32,-0.2 -0.608 4.8-149.3 -92.0 152.2 2.1 -3.6 5.8 79 79 A T E -A 45 0A 50 -34,-1.4 -34,-1.1 -2,-0.2 2,-0.7 -0.987 6.5-166.5-126.5 126.7 1.4 -6.6 8.0 80 80 A V E -A 44 0A 24 -2,-0.4 -36,-0.1 -57,-0.3 -37,-0.0 -0.903 5.5-164.5-115.3 102.0 2.5 -10.1 7.3 81 81 A T + 0 0 107 -38,-0.8 -1,-0.2 -2,-0.7 -37,-0.1 0.913 67.2 90.9 -46.6 -52.8 0.7 -12.6 9.5 82 82 A R S S- 0 0 134 -39,-0.2 -2,-0.1 -3,-0.1 -39,-0.0 0.075 89.1 -97.7 -42.0 158.1 3.2 -15.3 8.6 83 83 A P - 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.117 44.7 -86.1 -75.0 176.7 6.3 -15.5 10.8 84 84 A F - 0 0 156 1,-0.1 -59,-0.1 -59,-0.0 -60,-0.1 -0.125 22.6-148.0 -76.6 177.5 9.7 -14.0 10.1 85 85 A Q - 0 0 159 -61,-0.5 -1,-0.1 2,-0.1 -60,-0.1 0.747 54.0 -79.7-112.6 -52.2 12.5 -15.5 8.0 86 86 A G S S+ 0 0 55 1,-0.2 2,-0.2 2,-0.0 -61,-0.1 0.216 75.9 115.3 140.7 92.3 15.7 -14.3 9.5 87 87 A L - 0 0 97 -63,-0.1 -1,-0.2 -61,-0.1 -2,-0.1 -0.698 63.2-101.9-178.9 122.4 17.2 -10.9 9.0 88 88 A I - 0 0 142 -2,-0.2 2,-0.0 1,-0.1 -2,-0.0 -0.133 46.8-110.9 -48.6 142.2 17.9 -7.9 11.3 89 89 A P - 0 0 95 0, 0.0 -1,-0.1 0, 0.0 -67,-0.0 -0.275 18.0-147.1 -75.1 163.8 15.3 -5.2 10.9 90 90 A K - 0 0 146 -68,-0.1 2,-0.5 -2,-0.0 -65,-0.1 -0.743 11.6-164.2-136.9 85.7 16.0 -1.8 9.3 91 91 A P - 0 0 113 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.598 63.5 -18.5 -75.0 120.5 14.0 1.0 10.9 92 92 A D - 0 0 118 -2,-0.5 -18,-0.0 1,-0.1 0, 0.0 0.415 58.1-140.2 60.9 152.1 14.0 4.1 8.8 93 93 A E - 0 0 156 1,-0.0 -1,-0.1 2,-0.0 2,-0.0 0.694 30.1-162.2-112.5 -37.0 16.7 4.6 6.1 94 94 A S + 0 0 105 1,-0.0 -2,-0.0 2,-0.0 -1,-0.0 -0.176 22.6 144.0 77.9-175.6 17.4 8.3 6.5 95 95 A G - 0 0 55 -2,-0.0 2,-0.1 2,-0.0 -1,-0.0 -0.907 51.1 -18.4 139.7-166.1 19.1 10.5 4.0 96 96 A P - 0 0 140 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.410 56.5-141.0 -75.0 150.8 19.1 14.1 2.6 97 97 A S - 0 0 115 1,-0.2 -2,-0.0 -2,-0.1 0, 0.0 -0.926 11.4-162.8-116.9 139.5 16.0 16.3 3.1 98 98 A S 0 0 134 -2,-0.4 -1,-0.2 0, 0.0 0, 0.0 0.955 360.0 360.0 -80.7 -58.8 14.5 18.7 0.6 99 99 A G 0 0 117 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.571 360.0 360.0 105.8 360.0 12.4 20.8 2.9