==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION 31-JUL-08 3E0E . COMPND 2 MOLECULE: REPLICATION PROTEIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS; . AUTHOR J.SEETHARAMAN,Y.CHEN,H.WANG,H.JANJUA,E.L.FOOTE,R.XIAO, . 91 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5377.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 79.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 41 45.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 0 A X 0 0 160 0, 0.0 14,-0.6 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 158.7 5.2 9.9 -0.8 2 1 A N E -a 15 0A 96 12,-0.1 2,-0.3 1,-0.0 14,-0.2 -0.613 360.0-137.6 -80.3 144.2 2.4 8.8 1.5 3 2 A Y E -a 16 0A 62 12,-3.2 14,-0.6 -2,-0.3 2,-0.3 -0.763 6.7-135.9-108.8 152.0 0.5 5.8 0.1 4 3 A K >> - 0 0 89 -2,-0.3 3,-1.9 12,-0.1 4,-0.6 -0.747 35.0-115.0 -93.8 149.4 -3.2 4.9 -0.1 5 4 A I G >4 S+ 0 0 13 -2,-0.3 3,-1.1 1,-0.3 -1,-0.1 0.846 116.1 60.1 -55.9 -33.8 -3.7 1.3 0.8 6 5 A S G 34 S+ 0 0 79 1,-0.2 -1,-0.3 40,-0.1 41,-0.0 0.690 101.2 55.6 -68.4 -16.9 -4.9 0.6 -2.8 7 6 A E G <4 S+ 0 0 88 -3,-1.9 -1,-0.2 2,-0.0 -2,-0.2 0.577 82.2 114.6 -91.5 -10.9 -1.5 1.7 -4.1 8 7 A L << - 0 0 14 -3,-1.1 71,-0.0 -4,-0.6 5,-0.0 -0.269 43.5-172.8 -63.2 146.1 0.5 -0.7 -2.0 9 8 A X > - 0 0 127 64,-0.0 3,-1.1 70,-0.0 64,-0.2 -0.938 33.3 -86.8-135.8 156.7 2.6 -3.4 -3.7 10 9 A P T 3 S+ 0 0 69 0, 0.0 64,-0.2 0, 0.0 3,-0.1 -0.320 112.8 20.5 -64.1 147.9 4.5 -6.4 -2.5 11 10 A N T 3 S+ 0 0 121 62,-2.5 2,-0.4 1,-0.3 63,-0.1 0.719 97.4 131.5 65.2 22.0 8.2 -5.8 -1.5 12 11 A L E < - B 0 73A 34 -3,-1.1 61,-3.5 61,-0.6 2,-0.5 -0.851 45.7-154.9-106.6 141.1 7.3 -2.1 -1.2 13 12 A S E + B 0 72A 74 -2,-0.4 2,-0.3 59,-0.2 59,-0.2 -0.971 38.5 117.2-116.9 124.8 8.3 -0.0 1.8 14 13 A G E - B 0 71A 15 57,-2.1 57,-2.6 -2,-0.5 2,-0.4 -0.911 53.9 -93.4-163.4-169.1 6.2 3.0 2.6 15 14 A T E -aB 2 70A 27 -14,-0.6 -12,-3.2 -2,-0.3 2,-0.3 -0.958 26.5-173.9-127.4 141.7 3.8 4.9 4.9 16 15 A I E -aB 3 69A 0 53,-2.3 53,-3.0 -2,-0.4 2,-0.7 -0.964 20.5-140.9-131.8 149.1 0.0 5.0 5.0 17 16 A N E + B 0 68A 70 -14,-0.6 2,-0.3 -2,-0.3 51,-0.2 -0.951 44.2 158.9-110.3 109.2 -2.3 7.1 7.2 18 17 A A E - B 0 67A 2 49,-2.5 49,-3.1 -2,-0.7 2,-0.3 -0.952 43.8-109.0-140.3 157.1 -5.1 4.8 8.2 19 18 A E E -CB 42 66A 67 23,-2.9 23,-2.0 -2,-0.3 2,-0.9 -0.589 32.0-125.6 -80.4 136.4 -7.9 4.1 10.7 20 19 A V E +C 41 0A 0 45,-2.8 44,-2.9 -2,-0.3 21,-0.2 -0.760 32.5 174.9 -84.3 107.0 -7.4 1.2 13.1 21 20 A V E + 0 0 28 19,-2.8 2,-0.3 -2,-0.9 -1,-0.2 0.773 68.1 5.6 -83.3 -30.4 -10.6 -0.8 12.5 22 21 A T E -C 40 0A 44 18,-1.3 18,-2.6 -3,-0.2 2,-0.4 -0.992 55.4-161.5-154.8 148.5 -9.5 -3.6 14.8 23 22 A A E -C 39 0A 42 -2,-0.3 16,-0.2 16,-0.2 40,-0.1 -0.988 22.0-151.7-132.2 118.7 -6.7 -4.3 17.2 24 23 A Y - 0 0 101 14,-2.8 3,-0.1 -2,-0.4 -2,-0.0 -0.479 31.5 -78.8 -92.3 163.6 -6.3 -8.0 18.1 25 24 A P - 0 0 98 0, 0.0 13,-0.3 0, 0.0 -1,-0.1 -0.327 51.9-108.0 -60.6 137.9 -4.9 -9.6 21.3 26 25 A K - 0 0 72 11,-0.1 2,-0.5 31,-0.1 11,-0.2 -0.384 29.7-149.5 -66.8 141.8 -1.1 -9.5 21.6 27 26 A K E -D 36 0A 109 9,-3.0 9,-1.8 -2,-0.1 2,-0.3 -0.970 8.7-160.5-118.2 126.3 0.6 -12.9 21.2 28 27 A E E +D 35 0A 135 -2,-0.5 2,-0.3 7,-0.2 7,-0.2 -0.830 22.1 146.7-108.1 147.1 3.8 -13.7 23.1 29 28 A F E D 34 0A 99 5,-2.4 5,-2.7 -2,-0.3 -2,-0.0 -0.925 360.0 360.0-160.9-179.5 6.3 -16.4 22.2 30 29 A S 0 0 139 -2,-0.3 3,-0.2 3,-0.2 5,-0.0 -0.899 360.0 360.0-118.6 360.0 9.9 -17.6 22.0 31 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 32 34 A T 0 0 139 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -10.1 14.7 -15.5 22.8 33 35 A K + 0 0 64 -3,-0.2 2,-0.3 2,-0.0 -3,-0.2 -0.956 360.0 165.5-149.9 127.3 11.5 -13.4 23.2 34 36 A G E -D 29 0A 8 -5,-2.7 -5,-2.4 -2,-0.3 2,-0.3 -0.932 12.3-165.2-139.6 163.1 9.0 -12.1 20.7 35 37 A Q E -D 28 0A 24 -2,-0.3 19,-2.3 -7,-0.2 2,-0.3 -0.971 2.4-162.3-144.3 157.9 5.5 -10.6 20.5 36 38 A L E +DE 27 53A 11 -9,-1.8 -9,-3.0 -2,-0.3 2,-0.4 -0.990 7.2 179.4-145.1 134.1 2.9 -9.9 17.8 37 39 A K E - E 0 52A 29 15,-2.1 15,-2.8 -2,-0.3 2,-0.3 -0.977 19.1-151.5-134.5 116.6 -0.1 -7.5 17.8 38 40 A S E - E 0 51A 7 -2,-0.4 -14,-2.8 -13,-0.3 2,-0.3 -0.697 11.1-170.5 -92.2 145.3 -2.2 -7.5 14.6 39 41 A L E -CE 23 50A 1 11,-2.7 11,-3.0 -2,-0.3 2,-0.6 -0.942 18.8-141.0-129.3 149.2 -4.2 -4.5 13.5 40 42 A F E -CE 22 49A 72 -18,-2.6 -19,-2.8 -2,-0.3 -18,-1.3 -0.973 28.6-166.3-112.1 118.6 -6.7 -4.2 10.7 41 43 A L E -CE 20 48A 0 7,-3.0 7,-2.4 -2,-0.6 2,-0.3 -0.807 9.1-179.5-108.8 147.7 -6.2 -0.9 9.0 42 44 A K E +CE 19 47A 91 -23,-2.0 -23,-2.9 -2,-0.3 5,-0.2 -0.999 9.5 169.8-147.3 145.3 -8.4 1.0 6.6 43 45 A D E > - E 0 46A 24 3,-2.4 3,-0.6 -2,-0.3 -25,-0.1 -0.683 59.5 -74.3-134.3-168.6 -8.5 4.2 4.5 44 46 A D T 3 S+ 0 0 128 -2,-0.2 3,-0.1 1,-0.2 -40,-0.0 0.479 128.6 44.9 -73.8 1.6 -10.8 5.5 1.8 45 47 A T T 3 S- 0 0 55 1,-0.3 2,-0.3 0, 0.0 -1,-0.2 0.539 120.9 -50.7-118.7 -13.6 -9.3 3.1 -0.8 46 48 A G E < -E 43 0A 27 -3,-0.6 -3,-2.4 2,-0.0 2,-0.3 -0.995 50.5 -91.0 168.9-167.4 -9.0 -0.2 1.0 47 49 A S E +E 42 0A 62 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.957 28.3 177.4-138.8 155.9 -7.9 -2.2 4.0 48 50 A I E -E 41 0A 9 -7,-2.4 -7,-3.0 -2,-0.3 2,-0.3 -0.989 31.6-108.8-157.9 151.3 -4.9 -4.2 5.0 49 51 A R E -Ef 40 80A 91 30,-0.9 32,-2.6 -2,-0.3 2,-0.4 -0.648 31.0-159.1 -83.3 138.7 -3.5 -6.2 8.0 50 52 A G E -Ef 39 81A 0 -11,-3.0 -11,-2.7 -2,-0.3 2,-0.5 -0.958 3.0-150.6-119.5 138.8 -0.7 -4.6 9.9 51 53 A T E -Ef 38 82A 5 30,-2.4 32,-2.1 -2,-0.4 2,-0.6 -0.939 3.8-162.9-117.2 118.8 1.7 -6.5 12.2 52 54 A L E -E 37 0A 0 -15,-2.8 -15,-2.1 -2,-0.5 2,-0.3 -0.859 19.1-156.6 -95.8 122.3 3.3 -4.9 15.2 53 55 A W E > -E 36 0A 99 -2,-0.6 3,-1.8 30,-0.4 4,-0.3 -0.776 42.8 -35.5-109.0 149.9 6.3 -6.9 16.4 54 56 A N G > S+ 0 0 69 -19,-2.3 3,-1.8 -2,-0.3 4,-0.3 -0.172 132.0 8.9 47.5-120.7 8.1 -7.2 19.7 55 57 A E G > S+ 0 0 151 1,-0.3 3,-2.0 2,-0.2 -1,-0.3 0.845 126.6 60.9 -58.8 -34.4 8.1 -3.8 21.5 56 58 A L G X S+ 0 0 39 -3,-1.8 3,-1.5 1,-0.3 -1,-0.3 0.685 87.5 75.5 -67.3 -12.6 5.7 -2.2 19.1 57 59 A A G < S+ 0 0 0 -3,-1.8 -1,-0.3 -4,-0.3 -2,-0.2 0.682 95.7 50.0 -70.2 -14.7 3.2 -4.9 20.1 58 60 A D G < S+ 0 0 97 -3,-2.0 -1,-0.3 -4,-0.3 -2,-0.2 0.316 80.1 129.6-103.3 6.5 2.8 -2.9 23.2 59 61 A F < - 0 0 54 -3,-1.5 2,-1.1 1,-0.1 28,-0.0 -0.399 70.0-111.7 -61.9 133.6 2.3 0.4 21.4 60 62 A E + 0 0 137 -2,-0.1 2,-0.4 2,-0.0 -1,-0.1 -0.572 56.4 153.4 -74.6 101.4 -0.9 2.1 22.7 61 63 A V - 0 0 16 -2,-1.1 2,-0.3 30,-0.0 30,-0.0 -0.981 21.5-166.8-130.3 141.3 -3.3 2.0 19.8 62 64 A K > - 0 0 99 -2,-0.4 3,-2.1 -40,-0.0 -42,-0.3 -0.908 35.2 -90.4-128.6 154.4 -7.1 2.0 20.0 63 65 A K T 3 S+ 0 0 127 -2,-0.3 -42,-0.2 1,-0.3 3,-0.1 -0.405 115.7 30.9 -61.0 135.9 -9.9 1.2 17.6 64 66 A G T 3 S+ 0 0 23 -44,-2.9 -1,-0.3 1,-0.4 -43,-0.1 0.109 87.8 129.2 100.7 -22.7 -10.8 4.5 15.8 65 67 A D < - 0 0 0 -3,-2.1 -45,-2.8 -45,-0.2 2,-0.6 -0.368 55.5-137.4 -65.4 146.2 -7.3 5.9 16.0 66 68 A I E -BG 19 90A 56 24,-3.0 23,-2.7 -47,-0.2 24,-1.6 -0.941 31.7-170.3-106.2 118.2 -5.9 7.3 12.8 67 69 A A E -BG 18 88A 0 -49,-3.1 -49,-2.5 -2,-0.6 2,-0.8 -0.833 30.4-132.8-118.3 152.7 -2.3 6.2 12.6 68 70 A E E -BG 17 87A 74 19,-3.0 19,-1.7 -2,-0.3 2,-0.5 -0.899 34.3-172.0 -97.7 110.7 0.8 6.9 10.5 69 71 A V E -BG 16 86A 0 -53,-3.0 -53,-2.3 -2,-0.8 2,-0.4 -0.936 8.8-173.7-113.8 119.8 2.1 3.4 9.8 70 72 A S E +BG 15 85A 26 15,-2.8 14,-3.2 -2,-0.5 15,-2.1 -0.919 30.9 105.9-111.4 134.3 5.5 2.9 8.1 71 73 A G E -BG 14 83A 1 -57,-2.6 -57,-2.1 -2,-0.4 2,-0.4 -0.974 63.2 -62.7-177.3-168.6 6.6 -0.5 7.0 72 74 A Y E -BG 13 82A 89 10,-2.1 10,-3.2 -2,-0.3 2,-0.4 -0.882 40.6-139.2-107.0 130.8 7.3 -3.2 4.5 73 75 A V E +BG 12 81A 0 -61,-3.5 -62,-2.5 -2,-0.4 -61,-0.6 -0.757 32.7 157.6 -93.4 131.3 4.5 -4.7 2.4 74 76 A K E - G 0 80A 38 6,-2.6 6,-2.7 -2,-0.4 2,-0.4 -0.926 44.7 -93.7-144.9 167.7 4.4 -8.5 1.8 75 77 A Q E G 0 79A 81 -2,-0.3 4,-0.3 4,-0.2 6,-0.0 -0.726 360.0 360.0 -87.4 131.7 2.0 -11.2 0.9 76 78 A G 0 0 74 2,-3.3 -1,-0.0 -2,-0.4 4,-0.0 -0.370 360.0 360.0-125.9 360.0 0.5 -13.1 3.8 77 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 78 81 A G 0 0 90 0, 0.0 -2,-3.3 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -87.8 -3.4 -11.0 0.6 79 82 A L E - G 0 75A 62 -4,-0.3 -30,-0.9 -6,-0.0 2,-0.3 -0.668 360.0-179.4 -98.0 153.2 -1.1 -8.2 1.4 80 83 A E E -fG 49 74A 46 -6,-2.7 -6,-2.6 -2,-0.3 2,-0.5 -0.971 22.4-131.1-145.2 155.5 0.1 -7.2 4.9 81 84 A I E -fG 50 73A 1 -32,-2.6 -30,-2.4 -2,-0.3 2,-0.8 -0.956 11.1-147.0-116.9 120.1 2.3 -4.4 6.2 82 85 A S E -fG 51 72A 43 -10,-3.2 -10,-2.1 -2,-0.5 2,-0.3 -0.767 31.6-125.8 -83.1 114.3 5.1 -5.4 8.6 83 86 A V E + G 0 71A 8 -32,-2.1 -30,-0.4 -2,-0.8 -12,-0.3 -0.482 38.6 169.1 -73.3 125.7 5.3 -2.3 10.8 84 87 A D E S+ 0 0 109 -14,-3.2 2,-0.3 1,-0.4 -13,-0.2 0.747 76.4 3.3 -96.9 -37.9 8.6 -0.5 11.2 85 88 A N E - G 0 70A 93 -15,-2.1 -15,-2.8 2,-0.0 -1,-0.4 -0.997 62.3-172.4-151.5 146.9 7.2 2.6 12.9 86 89 A I E + G 0 69A 8 -2,-0.3 2,-0.3 -17,-0.2 -17,-0.2 -0.999 6.7 170.9-144.0 141.3 3.8 3.8 14.1 87 90 A G E - G 0 68A 23 -19,-1.7 -19,-3.0 -2,-0.3 2,-0.6 -0.978 35.2-110.6-145.1 154.5 2.5 7.1 15.4 88 91 A I E + G 0 67A 53 -2,-0.3 -21,-0.3 -21,-0.2 3,-0.2 -0.796 27.1 177.9 -94.0 121.6 -1.0 8.4 16.2 89 92 A I E S+ 0 0 98 -23,-2.7 2,-0.4 -2,-0.6 -22,-0.2 0.931 77.4 2.7 -81.8 -53.0 -2.2 11.2 13.9 90 93 A E E S- G 0 66A 125 -24,-1.6 -24,-3.0 -26,-0.0 -1,-0.3 -0.985 78.0-126.9-140.2 124.2 -5.6 11.6 15.4 91 94 A K - 0 0 112 -2,-0.4 -26,-0.1 -26,-0.2 -27,-0.1 -0.389 26.4-114.3 -70.8 148.3 -6.9 9.8 18.5 92 95 A S 0 0 57 1,-0.2 -1,-0.1 -30,-0.1 -28,-0.1 0.849 360.0 360.0 -47.3 -41.6 -10.3 8.0 18.2 93 96 A L 0 0 178 0, 0.0 -1,-0.2 0, 0.0 -29,-0.0 0.984 360.0 360.0 -63.7 360.0 -11.7 10.5 20.7