==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=14-JUN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL 04-MAR-12 4E0K . COMPND 2 MOLECULE: AMYLOIDOGENIC PEPTIDE SEGMENT KDWSFY; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.ZHAO,C.LIU,M.R.SAWAYA,D.EISENBERG . 24 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2728.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 45.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 33.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 182 0, 0.0 2,-0.3 0, 0.0 11,-0.0 0.000 360.0 360.0 360.0 150.1 -6.4 -9.9 19.1 2 2 A D - 0 0 117 11,-2.4 11,-1.8 2,-0.0 2,-0.3 -0.962 360.0-101.0-148.5 156.5 -8.3 -10.7 16.0 3 3 A W E -A 12 0A 167 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.653 35.6-176.8 -83.5 141.1 -10.6 -13.3 14.4 4 4 A S E -A 11 0A 39 7,-2.3 7,-2.0 -2,-0.3 2,-0.4 -0.957 13.0-157.5-132.6 153.3 -9.3 -15.8 11.9 5 5 A F E A 10 0A 109 -2,-0.3 5,-0.2 5,-0.2 -2,-0.0 -0.981 360.0 360.0-133.6 117.5 -11.0 -18.6 9.9 6 6 A Y 0 0 42 3,-2.1 3,-2.6 -2,-0.4 -2,-0.1 -0.964 360.0 360.0-163.7 360.0 -9.0 -21.5 8.6 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 1 B K 0 0 164 0, 0.0 2,-0.3 0, 0.0 8,-0.1 0.000 360.0 360.0 360.0 142.8 -12.6 -24.6 8.7 9 2 B D - 0 0 112 -3,-2.6 -3,-2.1 6,-0.3 2,-0.2 -0.956 360.0 -98.5-153.5 164.5 -13.2 -22.9 12.0 10 3 B W E -A 5 0A 160 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.530 27.6-177.2 -90.9 153.6 -12.8 -19.6 13.9 11 4 B S E -A 4 0A 25 -7,-2.0 -7,-2.3 -2,-0.2 2,-0.4 -0.980 11.9-157.5-141.0 152.8 -10.2 -18.5 16.4 12 5 B F E A 3 0A 109 -2,-0.3 -9,-0.2 -9,-0.2 -2,-0.0 -0.958 360.0 360.0-134.3 111.4 -9.8 -15.3 18.3 13 6 B Y 0 0 151 -11,-1.8 -11,-2.4 -2,-0.4 -2,-0.1 -0.954 360.0 360.0-167.8 360.0 -6.3 -14.5 19.6 14 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 15 1 C K 0 0 134 0, 0.0 -6,-0.3 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 164.8 -7.1 -26.9 9.5 16 2 C D - 0 0 82 -8,-0.1 11,-1.9 2,-0.0 2,-0.4 -0.985 360.0-102.7-155.8 163.2 -5.3 -25.7 12.6 17 3 C W E -B 26 0B 124 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.747 32.6-173.7 -87.8 140.0 -1.9 -25.0 14.1 18 4 C S E -B 25 0B 38 7,-2.3 7,-2.2 -2,-0.4 2,-0.5 -0.984 11.9-156.3-133.2 143.7 -0.3 -27.5 16.6 19 5 C F E B 24 0B 109 -2,-0.3 5,-0.2 5,-0.2 -2,-0.0 -0.971 360.0 360.0-124.3 112.8 2.9 -27.1 18.6 20 6 C Y 0 0 148 3,-2.0 3,-2.3 -2,-0.5 -2,-0.1 -0.948 360.0 360.0-163.2 360.0 4.5 -30.3 19.8 21 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 22 1 D K 0 0 175 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 0.000 360.0 360.0 360.0 161.5 9.0 -28.8 19.4 23 2 D D - 0 0 120 -3,-2.3 -3,-2.0 2,-0.0 2,-0.3 -0.976 360.0-102.0-157.7 158.9 7.7 -27.2 16.2 24 3 D W E -B 19 0B 154 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.727 32.6-176.0 -91.6 142.2 4.5 -25.8 14.7 25 4 D S E -B 18 0B 38 -7,-2.2 -7,-2.3 -2,-0.3 2,-0.4 -0.963 12.8-155.0-130.8 150.9 2.5 -27.8 12.1 26 5 D F E B 17 0B 84 -2,-0.3 -9,-0.2 -9,-0.2 -2,-0.0 -0.973 360.0 360.0-130.7 114.4 -0.6 -26.7 10.1 27 6 D Y 0 0 145 -11,-1.9 -10,-0.1 -2,-0.4 -1,-0.1 0.340 360.0 360.0-163.6 360.0 -2.9 -29.4 8.9