==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 11-MAY-00 1E1U . COMPND 2 MOLECULE: PRION PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR L.CALZOLAI,D.A.LYSEK,P.GUNTERT,C.VON SCHROETTER,R.ZAHN, . 104 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7325.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 75 72.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 51 49.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L > 0 0 125 0, 0.0 2,-0.9 0, 0.0 3,-0.9 0.000 360.0 360.0 360.0 3.6 3.2 -10.7 6.9 2 126 A G T 3 + 0 0 95 1,-0.3 0, 0.0 0, 0.0 0, 0.0 0.196 360.0 1.9 -64.2 13.2 6.8 -11.8 7.5 3 127 A G T 3 S+ 0 0 35 -2,-0.9 -1,-0.3 2,-0.0 2,-0.2 0.148 98.5 110.7 167.8 62.2 8.3 -8.3 8.0 4 128 A Y < - 0 0 62 -3,-0.9 2,-0.3 36,-0.1 36,-0.2 -0.642 44.7-142.7-128.9-178.8 5.8 -5.4 7.7 5 129 A M E -A 39 0A 72 34,-1.9 34,-1.8 -2,-0.2 2,-0.5 -0.949 17.0-129.4-146.4 170.7 4.2 -2.9 10.1 6 130 A L E +A 38 0A 77 -2,-0.3 32,-0.2 32,-0.2 3,-0.1 -0.934 36.0 169.2-123.5 92.0 0.9 -1.1 10.8 7 131 A G E - 0 0 43 -2,-0.5 2,-0.3 30,-0.5 -1,-0.1 0.840 52.1 -16.8 -88.1 -39.6 1.9 2.6 11.0 8 132 A S E - 0 0 41 29,-0.4 29,-0.7 2,-0.0 2,-0.3 -0.981 48.4-127.9-158.3 152.5 -1.3 4.7 11.0 9 133 A A E -A 36 0A 45 -2,-0.3 27,-0.2 27,-0.2 3,-0.1 -0.764 14.2-161.9 -87.3 157.6 -5.0 4.7 10.3 10 134 A M - 0 0 40 25,-1.5 26,-0.1 1,-0.6 82,-0.0 -0.460 41.1-111.9-134.2 57.5 -6.1 7.5 8.0 11 135 A S - 0 0 90 1,-0.1 -1,-0.6 24,-0.0 0, 0.0 -0.107 57.1 -54.0 46.6-143.6 -9.8 7.3 8.9 12 136 A R - 0 0 120 -3,-0.1 -1,-0.1 2,-0.0 23,-0.1 -0.924 62.3-148.0-124.4 99.7 -12.2 6.1 6.1 13 137 A P - 0 0 32 0, 0.0 2,-0.4 0, 0.0 72,-0.1 -0.206 5.8-133.1 -63.3 164.8 -11.7 8.2 2.9 14 138 A I - 0 0 68 71,-0.0 2,-0.4 2,-0.0 9,-0.0 -0.944 20.4-174.4-115.9 136.7 -14.4 9.0 0.4 15 139 A I - 0 0 33 -2,-0.4 2,-1.0 8,-0.1 70,-0.1 -0.872 20.1-141.7-140.7 95.5 -13.5 8.5 -3.3 16 140 A H - 0 0 136 -2,-0.4 4,-0.1 1,-0.2 -2,-0.0 -0.504 13.9-167.7 -71.9 96.4 -16.3 9.7 -5.7 17 141 A F - 0 0 60 -2,-1.0 -1,-0.2 2,-0.2 3,-0.1 0.815 46.9-101.5 -55.2 -36.7 -16.1 7.0 -8.4 18 142 A G S S+ 0 0 65 1,-0.2 2,-0.2 -3,-0.1 -1,-0.1 0.649 95.7 89.9 108.4 37.0 -18.3 9.0 -10.8 19 143 A S > - 0 0 63 1,-0.0 4,-2.5 2,-0.0 3,-0.4 -0.733 65.9-146.0-159.2 114.9 -21.6 7.1 -10.3 20 144 A D H > S+ 0 0 151 1,-0.2 4,-0.8 -2,-0.2 5,-0.1 0.706 103.3 59.1 -49.3 -29.5 -24.2 8.1 -7.6 21 145 A Y H >> S+ 0 0 176 2,-0.2 4,-2.6 3,-0.1 3,-0.8 0.956 108.7 39.5 -64.8 -57.9 -24.9 4.4 -7.3 22 146 A E H 3> S+ 0 0 64 -3,-0.4 4,-2.9 1,-0.2 5,-0.3 0.882 110.4 62.1 -62.0 -36.8 -21.4 3.4 -6.3 23 147 A D H 3X S+ 0 0 36 -4,-2.5 4,-0.8 1,-0.2 -1,-0.2 0.749 112.6 35.9 -62.5 -29.8 -21.2 6.5 -4.2 24 148 A R H < S+ 0 0 133 -4,-2.5 3,-0.5 1,-0.1 2,-0.4 0.962 126.7 32.3 -67.3 -70.0 -23.4 2.0 3.1 29 153 A N H 3< S+ 0 0 73 -4,-2.2 3,-0.3 1,-0.2 4,-0.3 -0.067 81.2 114.1 -96.2 32.5 -21.0 -0.9 3.0 30 154 A M T >< + 0 0 8 -4,-0.6 3,-1.4 -2,-0.4 -1,-0.2 0.756 61.6 73.2 -70.5 -27.1 -17.6 0.8 3.7 31 155 A H T < S+ 0 0 136 -3,-0.5 -1,-0.2 1,-0.3 -2,-0.1 0.870 88.3 59.1 -69.0 -34.2 -17.0 -0.9 7.1 32 156 A R T 3 S+ 0 0 87 -3,-0.3 -1,-0.3 2,-0.1 -2,-0.2 0.726 99.3 75.7 -58.1 -25.3 -16.1 -4.3 5.5 33 157 A Y S < S- 0 0 8 -3,-1.4 46,-0.0 -4,-0.3 49,-0.0 -0.433 96.7 -89.6 -84.6 163.5 -13.3 -2.3 3.7 34 158 A P - 0 0 12 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.229 23.5-169.9 -75.8 166.6 -10.1 -1.3 5.6 35 159 A N S S+ 0 0 66 1,-0.2 -25,-1.5 -23,-0.1 2,-0.3 0.336 81.8 41.2-123.7 -6.6 -9.2 1.9 7.7 36 160 A Q E -A 9 0A 64 -27,-0.2 2,-0.4 -26,-0.1 -1,-0.2 -0.966 68.6-154.3-135.4 153.3 -5.5 1.0 8.0 37 161 A V E - 0 0 2 -29,-0.7 -30,-0.5 -2,-0.3 -29,-0.4 -0.967 15.5-129.9-126.3 141.5 -3.0 -0.5 5.5 38 162 A Y E +A 6 0A 66 -2,-0.4 2,-0.3 17,-0.3 -32,-0.2 -0.460 37.0 162.2 -73.4 163.2 0.2 -2.5 6.3 39 163 A Y E -A 5 0A 29 -34,-1.8 -34,-1.9 -2,-0.1 13,-0.0 -0.959 29.1-125.2-163.5-178.2 3.5 -1.4 4.6 40 164 A R - 0 0 71 -2,-0.3 -36,-0.1 -36,-0.2 2,-0.1 -0.805 34.3 -96.6-121.6 166.4 7.3 -1.7 4.7 41 165 A P - 0 0 57 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 -0.396 65.8 -66.8 -70.7 166.1 10.1 0.9 4.8 42 166 A M + 0 0 37 -2,-0.1 2,-0.3 1,-0.0 3,-0.1 -0.429 68.1 152.7 -57.8 108.7 11.8 2.0 1.5 43 167 A D - 0 0 83 1,-0.6 -1,-0.0 -2,-0.4 -3,-0.0 -0.803 68.3 -51.9-142.5 98.6 13.7 -1.1 0.3 44 168 A E S S+ 0 0 162 -2,-0.3 -1,-0.6 2,-0.1 7,-0.0 -0.130 117.1 65.2 55.9-166.9 13.9 -0.9 -3.5 45 169 A Y + 0 0 75 1,-0.1 2,-0.7 -3,-0.1 6,-0.3 0.571 67.6 140.7 33.8 41.7 10.8 -0.2 -5.7 46 170 A S + 0 0 31 4,-0.2 -1,-0.1 5,-0.1 -2,-0.1 -0.868 31.4 74.9-118.8 94.9 10.2 3.3 -4.2 47 171 A N S S- 0 0 102 -2,-0.7 -1,-0.0 1,-0.2 -2,-0.0 -0.222 95.9 -15.3-152.1 -93.9 9.0 6.0 -6.7 48 172 A Q S > S- 0 0 153 -2,-0.1 4,-0.6 3,-0.1 3,-0.2 0.764 123.0 -19.1 -89.8-102.0 5.4 6.3 -8.2 49 173 A N H > S+ 0 0 86 1,-0.2 4,-3.0 2,-0.1 5,-0.2 0.601 113.2 90.1 -89.4 -10.6 3.0 3.4 -8.0 50 174 A N H > S+ 0 0 94 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.932 94.8 34.4 -46.4 -64.8 5.6 0.7 -7.3 51 175 A F H > S+ 0 0 9 -6,-0.3 4,-2.0 -3,-0.2 3,-0.5 0.934 118.8 53.2 -62.1 -47.8 5.6 0.9 -3.5 52 176 A V H X S+ 0 0 4 -4,-0.6 4,-2.8 1,-0.2 -1,-0.2 0.875 105.9 51.7 -56.4 -46.3 1.9 1.6 -3.4 53 177 A H H X S+ 0 0 99 -4,-3.0 4,-2.7 1,-0.2 -1,-0.2 0.837 109.2 51.3 -67.0 -30.7 0.8 -1.4 -5.5 54 178 A D H X S+ 0 0 71 -4,-1.2 4,-2.1 -3,-0.5 -1,-0.2 0.936 115.0 39.7 -70.5 -51.7 2.8 -3.8 -3.3 55 179 A a H X S+ 0 0 3 -4,-2.0 4,-2.2 2,-0.2 -17,-0.3 0.893 115.1 56.0 -66.9 -37.7 1.4 -2.6 0.0 56 180 A V H X S+ 0 0 2 -4,-2.8 4,-3.0 -5,-0.3 3,-0.5 0.975 107.6 47.0 -54.2 -58.4 -2.1 -2.4 -1.7 57 181 A N H X S+ 0 0 86 -4,-2.7 4,-2.9 1,-0.3 -2,-0.2 0.892 111.4 51.7 -59.7 -40.4 -2.0 -6.0 -2.8 58 182 A I H X S+ 0 0 45 -4,-2.1 4,-2.5 2,-0.2 -1,-0.3 0.884 114.5 42.3 -55.7 -45.6 -0.9 -7.1 0.7 59 183 A T H X S+ 0 0 3 -4,-2.2 4,-2.4 -3,-0.5 -2,-0.2 0.907 114.0 49.9 -78.4 -35.7 -3.8 -5.2 2.4 60 184 A I H X S+ 0 0 7 -4,-3.0 4,-2.9 2,-0.2 -2,-0.2 0.920 114.2 48.0 -62.9 -40.9 -6.4 -6.3 -0.2 61 185 A K H X S+ 0 0 113 -4,-2.9 4,-3.2 -5,-0.3 5,-0.3 0.918 107.4 54.9 -60.6 -45.9 -5.0 -9.8 0.4 62 186 A Q H X S+ 0 0 41 -4,-2.5 4,-2.2 2,-0.2 -2,-0.2 0.912 111.6 44.3 -60.2 -40.3 -5.3 -9.3 4.1 63 187 A H H X S+ 0 0 39 -4,-2.4 4,-1.7 2,-0.2 5,-0.2 0.976 113.0 51.4 -60.1 -57.2 -9.0 -8.4 3.6 64 188 A T H >X S+ 0 0 54 -4,-2.9 4,-2.6 1,-0.2 3,-0.9 0.924 114.3 44.3 -39.0 -59.5 -9.5 -11.4 1.2 65 189 A V H 3X S+ 0 0 55 -4,-3.2 4,-1.1 1,-0.3 -1,-0.2 0.839 108.6 55.7 -64.7 -36.6 -7.9 -13.7 3.9 66 190 A T H 3X S+ 0 0 66 -4,-2.2 4,-1.6 -5,-0.3 -1,-0.3 0.837 113.6 43.4 -65.3 -25.4 -9.9 -12.2 6.8 67 191 A T H S+ 0 0 12 -4,-1.7 4,-2.0 -3,-0.9 5,-1.9 0.836 103.3 60.5 -99.6 -24.9 -13.1 -13.0 4.7 68 192 A T H <5S+ 0 0 96 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.796 108.5 52.0 -60.3 -26.6 -12.0 -16.5 3.6 69 193 A T H <5S+ 0 0 114 -4,-1.1 -2,-0.2 -5,-0.2 -1,-0.2 0.974 111.4 41.7 -68.2 -60.4 -12.0 -16.9 7.5 70 194 A K H <5S- 0 0 179 -4,-1.6 -2,-0.2 1,-0.1 -3,-0.1 0.663 123.1-100.8 -68.3 -13.7 -15.6 -15.6 8.0 71 195 A G T <5S+ 0 0 68 -4,-2.0 2,-0.3 1,-0.3 -3,-0.2 0.891 85.0 102.6 91.5 55.7 -16.9 -17.5 4.9 72 196 A E < - 0 0 84 -5,-1.9 -1,-0.3 -8,-0.2 2,-0.3 -0.919 52.2-149.1-147.6 170.5 -17.0 -14.8 2.2 73 197 A N - 0 0 125 -2,-0.3 2,-0.7 -3,-0.1 -9,-0.1 -0.962 25.9-121.9-139.0 143.8 -15.1 -13.5 -0.8 74 198 A F - 0 0 20 -2,-0.3 -10,-0.0 4,-0.1 -2,-0.0 -0.809 32.5-131.3 -79.1 117.4 -15.0 -9.9 -1.9 75 199 A T > - 0 0 78 -2,-0.7 4,-2.4 1,-0.1 3,-0.4 -0.326 31.3 -97.4 -63.4 160.6 -16.4 -9.9 -5.5 76 200 A E H > S+ 0 0 142 1,-0.3 4,-2.6 2,-0.2 5,-0.1 0.760 124.2 57.3 -61.0 -27.7 -14.1 -8.0 -7.9 77 201 A T H > S+ 0 0 59 2,-0.2 4,-2.5 1,-0.2 -1,-0.3 0.977 109.7 44.6 -59.6 -55.8 -16.3 -4.8 -7.7 78 202 A D H > S+ 0 0 11 -3,-0.4 4,-2.4 1,-0.2 -2,-0.2 0.918 113.3 52.2 -56.9 -43.7 -15.7 -4.7 -3.9 79 203 A V H X S+ 0 0 24 -4,-2.4 4,-2.9 1,-0.2 -1,-0.2 0.920 110.2 46.8 -58.4 -48.1 -12.0 -5.4 -4.5 80 204 A K H X S+ 0 0 136 -4,-2.6 4,-1.9 2,-0.2 -1,-0.2 0.861 112.4 50.6 -65.4 -34.4 -11.7 -2.5 -7.0 81 205 A M H X S+ 0 0 3 -4,-2.5 4,-1.3 2,-0.2 -1,-0.2 0.849 112.0 48.0 -66.7 -39.0 -13.6 -0.3 -4.5 82 206 A M H X S+ 0 0 0 -4,-2.4 4,-3.2 -5,-0.2 5,-0.3 0.917 106.8 56.8 -64.0 -45.8 -11.1 -1.5 -1.8 83 207 A E H X S+ 0 0 63 -4,-2.9 4,-2.4 1,-0.3 5,-0.3 0.898 103.7 53.2 -59.8 -40.9 -8.1 -0.8 -4.2 84 208 A R H X S+ 0 0 88 -4,-1.9 4,-1.9 2,-0.2 -1,-0.3 0.928 117.3 38.7 -52.2 -49.9 -9.3 2.9 -4.5 85 209 A V H X S+ 0 0 2 -4,-1.3 4,-2.2 2,-0.2 -2,-0.2 0.968 115.3 49.1 -67.0 -57.5 -9.2 3.2 -0.7 86 210 A V H X S+ 0 0 1 -4,-3.2 4,-2.2 1,-0.2 -3,-0.2 0.815 113.4 49.3 -59.5 -34.6 -6.1 1.1 0.1 87 211 A E H X S+ 0 0 30 -4,-2.4 4,-2.9 -5,-0.3 5,-0.3 0.953 108.0 52.8 -65.7 -52.0 -4.1 3.1 -2.6 88 212 A Q H X S+ 0 0 80 -4,-1.9 4,-1.3 -5,-0.3 -2,-0.2 0.860 112.6 46.4 -53.9 -40.2 -5.3 6.5 -1.2 89 213 A M H X S+ 0 0 1 -4,-2.2 4,-1.8 2,-0.2 -1,-0.2 0.957 113.0 47.2 -65.3 -52.8 -4.0 5.3 2.2 90 214 A a H X S+ 0 0 2 -4,-2.2 4,-2.2 1,-0.2 -2,-0.2 0.863 107.3 56.4 -66.6 -32.8 -0.7 4.0 1.0 91 215 A I H X S+ 0 0 64 -4,-2.9 4,-2.4 1,-0.2 -1,-0.2 0.925 107.5 50.5 -59.1 -43.0 0.0 7.2 -1.1 92 216 A T H < S+ 0 0 55 -4,-1.3 -2,-0.2 -5,-0.3 -1,-0.2 0.884 108.5 51.9 -60.8 -40.4 -0.5 9.1 2.2 93 217 A Q H >X S+ 0 0 9 -4,-1.8 3,-0.9 1,-0.2 4,-0.6 0.854 108.4 50.1 -66.5 -34.6 2.1 6.7 3.9 94 218 A Y H 3X>S+ 0 0 41 -4,-2.2 4,-0.8 1,-0.2 5,-0.8 0.952 102.0 64.6 -62.0 -47.0 4.6 7.4 1.1 95 219 A E H 3<5S+ 0 0 115 -4,-2.4 -1,-0.2 3,-0.2 -2,-0.2 0.105 104.4 48.8 -67.1 24.7 4.0 11.2 1.7 96 220 A K H X>5S+ 0 0 107 -3,-0.9 4,-1.2 -2,-0.8 3,-0.7 0.353 121.3 13.1-122.3 -92.3 5.5 10.8 5.2 97 221 A E H >X5S+ 0 0 136 -4,-0.6 4,-2.6 1,-0.2 3,-0.6 0.872 126.3 54.6 -61.3 -42.3 8.9 9.0 5.6 98 222 A S H 3X5S+ 0 0 6 -4,-0.8 4,-2.3 -5,-0.4 -1,-0.2 0.830 105.1 54.6 -63.9 -30.6 9.8 9.1 1.9 99 223 A Q H <4