==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-OCT-06 2E1O . COMPND 2 MOLECULE: HOMEOBOX PROTEIN PRH; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.NAKAMURA,S.OHNISHI,T.ABE,N.NAMEKI,N.TOCHIO,S.KOSHIBA, . 70 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6093.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 64.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -61.8 -14.2 18.8 5.8 2 2 A S + 0 0 133 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.875 360.0 108.1 -46.2 -43.9 -10.6 19.5 4.8 3 3 A S + 0 0 107 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.086 48.0 162.7 -35.2 145.8 -9.8 15.8 5.6 4 4 A G - 0 0 64 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.989 21.9-163.8-165.2 165.2 -9.2 13.8 2.5 5 5 A S + 0 0 127 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.905 7.5 173.5-148.2 174.3 -7.8 10.6 1.0 6 6 A S + 0 0 133 -2,-0.3 2,-0.5 3,-0.0 3,-0.1 -0.977 35.4 78.8-173.5 170.1 -6.6 8.9 -2.2 7 7 A G + 0 0 57 -2,-0.3 3,-0.1 1,-0.1 -2,-0.0 -0.894 19.7 154.1 125.9-104.1 -5.0 5.9 -3.8 8 8 A K + 0 0 210 -2,-0.5 2,-0.3 1,-0.2 -1,-0.1 0.817 49.1 130.9 39.3 38.0 -7.1 2.7 -4.2 9 9 A G + 0 0 70 -3,-0.1 -1,-0.2 2,-0.0 2,-0.1 -0.901 19.5 80.9-122.3 150.8 -4.7 1.9 -7.0 10 10 A G - 0 0 62 -2,-0.3 2,-0.2 -3,-0.1 -3,-0.0 -0.309 67.4-110.5 131.7 144.5 -2.7 -1.2 -7.9 11 11 A Q + 0 0 165 -2,-0.1 2,-0.3 2,-0.1 -1,-0.1 -0.205 68.4 136.5 -95.8 42.0 -3.1 -4.5 -9.7 12 12 A V - 0 0 96 -2,-0.2 2,-0.6 2,-0.0 38,-0.0 -0.658 44.2-150.6 -91.6 146.2 -2.8 -6.5 -6.4 13 13 A R + 0 0 167 -2,-0.3 2,-0.3 37,-0.0 -2,-0.1 -0.878 40.3 127.4-120.8 99.2 -5.0 -9.4 -5.5 14 14 A F - 0 0 48 -2,-0.6 2,-0.1 32,-0.1 -2,-0.0 -0.958 49.6-112.8-146.5 162.6 -5.6 -9.9 -1.8 15 15 A S > - 0 0 47 -2,-0.3 4,-3.2 1,-0.1 5,-0.3 -0.459 34.9-103.6 -93.7 168.2 -8.4 -10.2 0.8 16 16 A N H > S+ 0 0 117 2,-0.2 4,-2.3 1,-0.2 5,-0.1 0.978 122.2 33.5 -52.8 -66.7 -9.4 -7.8 3.5 17 17 A D H > S+ 0 0 82 1,-0.2 4,-2.3 2,-0.2 5,-0.3 0.898 116.9 58.3 -57.7 -42.8 -7.9 -9.8 6.4 18 18 A Q H > S+ 0 0 25 1,-0.2 4,-3.0 2,-0.2 -1,-0.2 0.940 108.7 43.8 -52.8 -53.1 -5.0 -11.0 4.2 19 19 A T H X S+ 0 0 47 -4,-3.2 4,-1.9 2,-0.2 5,-0.2 0.936 109.2 58.0 -59.0 -49.3 -4.0 -7.4 3.4 20 20 A I H >X S+ 0 0 90 -4,-2.3 4,-2.4 -5,-0.3 3,-0.6 0.936 115.9 33.8 -45.5 -60.5 -4.3 -6.3 7.0 21 21 A E H 3X S+ 0 0 79 -4,-2.3 4,-2.0 1,-0.2 5,-0.2 0.940 109.2 65.6 -63.1 -48.9 -1.8 -8.9 8.2 22 22 A L H 3X S+ 0 0 0 -4,-3.0 4,-1.2 -5,-0.3 -1,-0.2 0.805 112.7 37.0 -43.1 -33.5 0.3 -8.7 5.1 23 23 A E H X S+ 0 0 58 -4,-2.0 4,-2.2 2,-0.2 3,-1.1 0.952 102.2 54.5 -83.4 -60.0 4.1 -7.9 9.1 26 26 A F H 3< S+ 0 0 0 -4,-1.2 -2,-0.2 1,-0.3 -1,-0.1 0.767 103.8 63.7 -45.6 -27.1 6.2 -5.8 6.6 27 27 A E H 3< S+ 0 0 115 -4,-2.0 -1,-0.3 1,-0.2 3,-0.2 0.949 107.3 37.4 -64.6 -50.7 6.1 -3.2 9.5 28 28 A T H << S+ 0 0 116 -3,-1.1 2,-0.3 -4,-0.7 -2,-0.2 0.781 139.0 13.0 -72.2 -27.3 8.1 -5.4 11.8 29 29 A Q < - 0 0 85 -4,-2.2 -1,-0.3 1,-0.1 -2,-0.1 -0.855 58.0-156.1-155.4 114.4 10.2 -6.7 9.0 30 30 A K S S+ 0 0 42 -2,-0.3 29,-0.3 -3,-0.2 2,-0.2 0.808 89.0 32.1 -57.9 -30.0 10.5 -5.3 5.4 31 31 A Y S S- 0 0 112 -6,-0.1 2,-0.3 -3,-0.1 21,-0.0 -0.708 70.1-150.7-122.5 174.2 11.6 -8.8 4.3 32 32 A L - 0 0 24 -2,-0.2 23,-0.0 20,-0.1 -6,-0.0 -0.928 20.0-122.0-152.5 123.4 11.0 -12.4 5.3 33 33 A S >> - 0 0 65 -2,-0.3 4,-2.0 1,-0.1 3,-1.4 -0.180 34.4-106.1 -61.0 154.6 13.2 -15.4 5.1 34 34 A P H 3> S+ 0 0 83 0, 0.0 4,-2.3 0, 0.0 5,-0.3 0.877 117.7 66.0 -48.0 -44.2 12.0 -18.5 3.1 35 35 A P H 3> S+ 0 0 72 0, 0.0 4,-0.7 0, 0.0 -2,-0.0 0.855 115.2 28.2 -48.0 -41.1 11.3 -20.4 6.4 36 36 A E H X> S+ 0 0 92 -3,-1.4 4,-2.8 2,-0.2 3,-1.3 0.949 113.9 57.8 -85.8 -66.2 8.6 -17.9 7.2 37 37 A R H 3X S+ 0 0 58 -4,-2.0 4,-2.1 1,-0.3 5,-0.1 0.792 107.5 55.5 -33.9 -37.5 7.3 -16.6 3.9 38 38 A K H 3< S+ 0 0 121 -4,-2.3 4,-0.4 -5,-0.3 -1,-0.3 0.943 113.1 37.6 -64.7 -49.4 6.6 -20.3 3.3 39 39 A R H XX S+ 0 0 180 -3,-1.3 4,-1.7 -4,-0.7 3,-1.4 0.899 113.0 58.2 -69.5 -42.0 4.5 -20.7 6.4 40 40 A L H >X S+ 0 0 8 -4,-2.8 4,-3.0 1,-0.3 3,-0.6 0.930 98.6 58.2 -53.4 -50.3 2.9 -17.3 6.1 41 41 A A H 3<>S+ 0 0 11 -4,-2.1 5,-0.6 -5,-0.3 -1,-0.3 0.745 110.2 46.5 -52.8 -23.4 1.5 -18.2 2.6 42 42 A K H <45S+ 0 0 166 -3,-1.4 -1,-0.3 -4,-0.4 -2,-0.2 0.773 112.0 48.9 -89.6 -30.7 -0.3 -21.0 4.4 43 43 A M H <<5S+ 0 0 123 -4,-1.7 -2,-0.2 -3,-0.6 -3,-0.2 0.921 122.3 32.3 -74.5 -46.2 -1.5 -18.9 7.3 44 44 A L T <5S- 0 0 14 -4,-3.0 -1,-0.2 -5,-0.1 -3,-0.2 0.442 110.0-120.7 -89.6 -1.2 -3.0 -16.1 5.1 45 45 A Q T 5 + 0 0 160 -5,-0.5 -3,-0.2 1,-0.2 -4,-0.2 0.805 69.6 134.6 66.0 29.4 -3.8 -18.6 2.4 46 46 A L < - 0 0 11 -5,-0.6 2,-0.3 -6,-0.4 -1,-0.2 -0.404 56.2-102.8-101.0 179.9 -1.5 -16.7 0.0 47 47 A S >> - 0 0 67 -2,-0.1 4,-2.5 1,-0.1 3,-0.8 -0.796 23.5-118.9-107.4 149.2 1.1 -17.8 -2.5 48 48 A E H 3> S+ 0 0 98 -2,-0.3 4,-1.8 1,-0.3 5,-0.2 0.901 119.1 48.7 -48.2 -47.6 4.9 -17.6 -2.1 49 49 A R H 3> S+ 0 0 182 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.801 111.1 51.8 -64.4 -28.9 5.1 -15.3 -5.1 50 50 A Q H <> S+ 0 0 55 -3,-0.8 4,-1.5 2,-0.2 -2,-0.2 0.846 114.2 41.2 -76.1 -35.4 2.3 -13.2 -3.6 51 51 A V H X S+ 0 0 1 -4,-2.5 4,-0.6 2,-0.2 -2,-0.2 0.665 119.4 46.4 -84.9 -18.5 4.1 -12.9 -0.2 52 52 A K H X S+ 0 0 71 -4,-1.8 4,-1.4 -5,-0.3 -2,-0.2 0.802 116.2 42.6 -91.1 -35.0 7.4 -12.3 -1.9 53 53 A T H X S+ 0 0 45 -4,-2.0 4,-2.8 -5,-0.2 5,-0.3 0.936 111.6 53.1 -76.6 -49.5 6.2 -9.8 -4.5 54 54 A W H X S+ 0 0 27 -4,-1.5 4,-3.1 -5,-0.3 -3,-0.1 0.960 114.1 41.0 -49.4 -63.6 4.0 -7.7 -2.2 55 55 A F H X S+ 0 0 7 -4,-0.6 4,-2.3 2,-0.2 5,-0.3 0.955 113.3 53.7 -50.4 -59.8 6.7 -7.1 0.4 56 56 A Q H X S+ 0 0 85 -4,-1.4 4,-1.9 1,-0.3 -1,-0.2 0.909 115.1 40.0 -40.9 -58.8 9.4 -6.5 -2.2 57 57 A N H X S+ 0 0 101 -4,-2.8 4,-1.2 1,-0.2 -1,-0.3 0.892 110.8 61.5 -60.5 -41.1 7.3 -3.8 -3.9 58 58 A R H >X S+ 0 0 68 -4,-3.1 4,-2.9 -5,-0.3 3,-1.7 0.962 106.1 42.9 -49.3 -64.8 6.2 -2.5 -0.5 59 59 A R H 3X S+ 0 0 75 -4,-2.3 4,-3.1 -29,-0.3 5,-0.3 0.929 105.0 63.9 -48.2 -54.2 9.7 -1.6 0.7 60 60 A A H 3< S+ 0 0 67 -4,-1.9 4,-0.5 -5,-0.3 -1,-0.3 0.795 115.4 33.9 -41.2 -32.9 10.6 -0.1 -2.7 61 61 A K H XX S+ 0 0 153 -3,-1.7 4,-1.6 -4,-1.2 3,-0.6 0.886 112.0 58.2 -90.6 -48.6 7.8 2.4 -1.9 62 62 A W H 3X S+ 0 0 81 -4,-2.9 4,-3.0 1,-0.2 -2,-0.2 0.880 97.3 65.8 -48.8 -43.1 8.2 2.7 1.9 63 63 A R H 3< S+ 0 0 144 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.921 103.9 43.3 -45.3 -55.4 11.8 3.8 1.3 64 64 A R H <4 S+ 0 0 218 -3,-0.6 -1,-0.3 -4,-0.5 -2,-0.2 0.858 112.5 54.9 -60.8 -36.1 10.6 7.0 -0.4 65 65 A S H < S+ 0 0 103 -4,-1.6 -2,-0.2 -3,-0.1 -1,-0.2 0.899 100.7 70.1 -65.0 -41.7 7.9 7.4 2.3 66 66 A G S < S- 0 0 17 -4,-3.0 0, 0.0 -5,-0.2 0, 0.0 -0.506 80.0-135.4 -80.9 147.1 10.5 7.3 5.1 67 67 A P + 0 0 132 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.765 62.2 130.0 -69.7 -26.3 13.0 10.1 5.7 68 68 A S - 0 0 75 1,-0.2 -2,-0.1 2,-0.1 -3,-0.0 -0.013 34.1-179.2 -34.4 98.8 15.8 7.6 6.1 69 69 A S 0 0 131 1,-0.0 -1,-0.2 -5,-0.0 -3,-0.0 0.959 360.0 360.0 -72.4 -53.7 18.3 9.1 3.7 70 70 A G 0 0 125 -3,-0.0 -2,-0.1 0, 0.0 -1,-0.0 0.354 360.0 360.0 162.1 360.0 21.1 6.6 4.1