==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 03-NOV-06 2E1X . COMPND 2 MOLECULE: GAG-POL POLYPROTEIN (PR160GAG-POL); . SOURCE 2 SYNTHETIC: YES; . AUTHOR T.MATSUI,Y.KODERA,E.MIYAUCHI,H.TANAKA,H.ENDOH,H.KOMATSU, . 27 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2713.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 22.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 23 A R 0 0 283 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 88.2 -5.0 -6.6 -8.0 2 24 A A - 0 0 78 1,-0.2 2,-2.5 2,-0.1 3,-0.3 -0.177 360.0 -93.8 -61.1 159.7 -2.0 -7.7 -6.0 3 25 A P > + 0 0 90 0, 0.0 3,-1.0 0, 0.0 -1,-0.2 -0.427 63.9 152.0 -74.4 71.0 0.4 -5.1 -4.7 4 26 A R T 3 S+ 0 0 192 -2,-2.5 -2,-0.1 1,-0.2 0, 0.0 0.837 70.3 57.0 -73.1 -29.9 2.8 -5.3 -7.7 5 27 A R T 3 S- 0 0 143 -3,-0.3 -1,-0.2 2,-0.2 7,-0.0 0.317 113.9-119.1 -83.3 12.4 3.9 -1.7 -7.2 6 28 A Q S < S- 0 0 154 -3,-1.0 2,-0.1 3,-0.0 -2,-0.1 0.964 78.9 -12.8 49.3 78.7 5.0 -2.5 -3.6 7 29 A G S S- 0 0 1 5,-0.1 11,-0.4 -4,-0.1 7,-0.3 -0.430 118.8 -21.8 94.5-173.9 2.6 -0.1 -1.7 8 30 A a - 0 0 5 5,-1.4 4,-0.3 8,-0.6 9,-0.1 -0.249 57.4-124.8 -65.9 159.0 0.6 2.7 -3.1 9 31 A W S S+ 0 0 129 1,-0.1 -1,-0.1 2,-0.1 8,-0.1 0.099 108.3 26.9 -91.3 24.4 1.7 4.2 -6.5 10 32 A K S S+ 0 0 102 3,-0.1 -1,-0.1 0, 0.0 7,-0.0 0.421 120.9 44.6-149.9 -43.5 1.8 7.6 -4.8 11 33 A C S S- 0 0 53 2,-0.1 -2,-0.1 12,-0.0 6,-0.1 0.917 91.5-135.8 -79.7 -41.5 2.4 7.4 -1.0 12 34 A G + 0 0 60 -4,-0.3 2,-0.3 1,-0.3 -5,-0.1 0.875 59.4 115.2 90.6 42.9 5.2 4.8 -1.3 13 35 A K - 0 0 134 3,-0.2 -5,-1.4 -5,-0.1 3,-0.4 -0.999 55.7-131.0-145.1 147.4 4.2 2.4 1.5 14 36 A T S S+ 0 0 97 -2,-0.3 -6,-0.1 -7,-0.3 3,-0.0 -0.088 81.6 67.1 -82.5-171.1 3.1 -1.3 1.7 15 37 A G S S+ 0 0 84 -8,-0.1 2,-0.2 -12,-0.0 -1,-0.2 0.488 117.5 18.0 75.8 -1.3 0.1 -2.5 3.7 16 38 A H S S- 0 0 44 -3,-0.4 -8,-0.6 -13,-0.0 -3,-0.2 -0.863 70.9-149.1 173.0 152.9 -2.1 -0.6 1.2 17 39 A V > - 0 0 23 -2,-0.2 4,-4.0 -10,-0.2 -9,-0.4 -0.494 50.4 -72.3-123.3-164.2 -1.8 0.9 -2.2 18 40 A M T 4 S+ 0 0 81 -11,-0.4 -10,-0.1 1,-0.2 -1,-0.0 0.737 135.5 50.0 -66.0 -16.7 -3.3 3.9 -4.1 19 41 A A T 4 S+ 0 0 54 1,-0.1 -1,-0.2 3,-0.0 5,-0.1 0.768 126.3 23.1 -91.0 -28.7 -6.5 1.8 -4.2 20 42 A K T 4 S+ 0 0 155 -3,-0.2 -2,-0.2 3,-0.1 4,-0.1 0.548 94.3 118.6-112.9 -11.8 -6.5 1.0 -0.4 21 43 A a S < S- 0 0 6 -4,-4.0 3,-0.4 1,-0.1 -4,-0.1 0.026 78.7-108.9 -48.7 167.3 -4.4 3.9 0.9 22 44 A P S S+ 0 0 106 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.611 111.6 45.7 -77.5 -13.3 -6.1 6.3 3.3 23 45 A E + 0 0 115 1,-0.1 -2,-0.1 0, 0.0 3,-0.1 -0.594 61.6 133.5-132.2 77.3 -6.2 9.1 0.7 24 46 A R - 0 0 126 -3,-0.4 2,-1.5 -2,-0.3 3,-0.1 -0.225 66.4-120.4-115.8 44.2 -7.4 7.8 -2.7 25 47 A Q - 0 0 193 1,-0.2 -1,-0.2 2,-0.0 0, 0.0 -0.287 36.8-176.7 55.6 -89.0 -10.0 10.6 -3.5 26 48 A A 0 0 62 -2,-1.5 -1,-0.2 -3,-0.1 -2,-0.0 0.996 360.0 360.0 62.2 62.9 -13.0 8.2 -3.7 27 49 A G 0 0 143 -3,-0.1 -2,-0.0 0, 0.0 -3,-0.0 0.940 360.0 360.0 -88.7 360.0 -15.6 10.9 -4.7