==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL CYCLE 06-MAR-12 4E1H . COMPND 2 MOLECULE: MAJOR PRION PROTEIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR M.I.APOSTOL,K.PERRY,W.K.SUREWICZ . 72 12 6 0 6 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4552.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 69.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 39 54.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 6 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 6 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 177 A H 0 0 226 0, 0.0 2,-0.7 0, 0.0 12,-0.1 0.000 360.0 360.0 360.0 155.0 -3.2 20.3 13.5 2 178 A D E +A 12 0A 84 10,-0.7 10,-2.7 73,-0.0 2,-0.3 -0.903 360.0 149.4-113.8 107.8 -0.5 23.1 13.7 3 179 A a E -A 11 0A 29 -2,-0.7 2,-0.4 8,-0.2 8,-0.3 -0.851 40.9-141.4-136.1 155.1 2.9 21.6 13.1 4 180 A V E -A 10 0A 1 6,-2.7 6,-2.3 -2,-0.3 2,-0.5 -0.905 24.0-132.4-111.4 152.4 6.4 22.1 11.7 5 181 A N E A 9 0A 79 -2,-0.4 4,-0.2 4,-0.2 77,-0.1 -0.923 360.0 360.0 -99.6 132.8 8.2 19.4 9.8 6 182 A I 0 0 34 2,-2.7 60,-0.0 -2,-0.5 76,-0.0 -0.895 360.0 360.0-117.4 360.0 11.9 18.8 10.9 7 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 8 211 B E 0 0 99 0, 0.0 -2,-2.7 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 129.7 9.2 14.2 11.3 9 212 B Q E -A 5 0A 95 18,-0.3 18,-2.7 -4,-0.2 2,-0.4 -0.962 360.0-165.8-127.6 138.8 6.6 16.5 12.8 10 213 B M E -AB 4 26A 1 -6,-2.3 -6,-2.7 -2,-0.4 2,-0.4 -0.993 20.1-172.4-122.5 124.6 6.3 18.6 15.9 11 214 B a E -AB 3 25A 16 14,-2.5 14,-2.6 -2,-0.4 2,-0.5 -0.943 25.8-130.4-124.6 141.3 2.9 20.0 16.6 12 215 B I E AB 2 24A 23 -10,-2.7 -10,-0.7 -2,-0.4 12,-0.2 -0.771 360.0 360.0 -90.6 123.9 1.4 22.4 19.2 13 216 B T 0 0 154 10,-2.2 10,-0.3 -2,-0.5 -1,-0.0 -0.533 360.0 360.0 -69.8 360.0 -1.6 20.7 20.8 14 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 15 177 C H 0 0 171 0, 0.0 2,-0.4 0, 0.0 12,-0.2 0.000 360.0 360.0 360.0 88.0 3.9 11.0 21.0 16 178 C D E -C 26 0A 84 10,-1.0 10,-2.9 17,-0.1 2,-0.3 -0.968 360.0-169.8-115.7 141.9 6.6 12.6 23.2 17 179 C b E -C 25 0A 23 -2,-0.4 2,-0.3 8,-0.3 8,-0.2 -0.891 23.4-152.2-133.1 158.3 6.1 16.2 24.3 18 180 C V E -C 24 0A 0 6,-2.8 6,-2.6 -2,-0.3 2,-0.4 -0.855 23.4-129.7-116.0 157.7 7.6 19.3 25.9 19 181 C N E C 23 0A 77 -2,-0.3 4,-0.2 4,-0.2 21,-0.1 -0.923 360.0 360.0-103.6 131.8 5.7 22.0 27.7 20 182 C I 0 0 33 2,-2.8 -2,-0.0 -2,-0.4 20,-0.0 -0.955 360.0 360.0-116.6 360.0 6.5 25.6 26.6 21 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 22 211 D E 0 0 98 0, 0.0 -2,-2.8 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 143.6 1.5 24.7 26.0 23 212 D Q E - C 0 19A 74 -10,-0.3 -10,-2.2 -4,-0.2 2,-0.5 -0.765 360.0-174.6-102.1 130.2 2.3 21.2 24.7 24 213 D M E -BC 12 18A 1 -6,-2.6 -6,-2.8 -2,-0.4 2,-0.4 -0.987 18.0-174.6-120.4 121.3 4.6 20.7 21.7 25 214 D b E -BC 11 17A 6 -14,-2.6 -14,-2.5 -2,-0.5 2,-0.5 -0.915 30.4-126.0-124.4 141.1 4.8 17.0 20.7 26 215 D I E BC 10 16A 20 -10,-2.9 -10,-1.0 -2,-0.4 -16,-0.2 -0.723 360.0 360.0 -80.3 124.2 6.7 14.9 18.3 27 216 D T 0 0 131 -18,-2.7 -18,-0.3 -2,-0.5 -1,-0.1 -0.380 360.0 360.0 -64.6 360.0 4.1 13.0 16.3 28 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 29 177 E H 0 0 237 0, 0.0 2,-0.5 0, 0.0 12,-0.1 0.000 360.0 360.0 360.0 150.1 14.0 17.9 32.4 30 178 E D + 0 0 46 10,-0.4 10,-2.5 -12,-0.1 2,-0.3 -0.794 360.0 128.8-129.8 80.3 11.7 19.1 29.7 31 179 E c E -D 39 0B 24 -2,-0.5 2,-0.3 8,-0.2 8,-0.2 -0.958 38.3-163.5-139.0 155.2 13.0 17.5 26.5 32 180 E V E -D 38 0B 2 6,-2.3 6,-2.6 -2,-0.3 2,-0.4 -0.974 30.5-113.9-134.4 151.2 12.2 15.4 23.5 33 181 E N E D 37 0B 110 -2,-0.3 4,-0.3 4,-0.2 -17,-0.1 -0.676 360.0 360.0 -80.2 136.8 14.4 13.5 21.1 34 182 E I 0 0 36 2,-2.2 3,-0.2 -2,-0.4 -1,-0.1 0.445 360.0 360.0-128.4 360.0 14.4 14.9 17.6 35 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 36 211 F E 0 0 99 0, 0.0 -2,-2.2 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 131.0 19.8 15.0 19.4 37 212 F Q E -D 33 0B 70 18,-2.6 18,-2.2 -4,-0.3 2,-0.5 -0.969 360.0-144.3-131.3 150.0 17.3 16.5 21.9 38 213 F M E -DE 32 54B 0 -6,-2.6 -6,-2.3 -2,-0.3 2,-0.4 -0.970 27.4-177.0-107.7 125.6 15.3 19.7 22.1 39 214 F c E -DE 31 53B 14 14,-2.6 14,-2.8 -2,-0.5 2,-0.5 -0.944 23.5-141.3-124.4 149.7 14.9 20.9 25.7 40 215 F I E E 0 52B 12 -10,-2.5 -10,-0.4 -2,-0.4 12,-0.2 -0.911 360.0 360.0-108.5 123.8 13.1 23.9 27.2 41 216 F T 0 0 114 10,-2.5 10,-2.2 -2,-0.5 -10,-0.0 -0.706 360.0 360.0-132.8 360.0 15.1 25.4 30.0 42 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 43 177 G H 0 0 165 0, 0.0 18,-0.4 0, 0.0 11,-0.1 0.000 360.0 360.0 360.0 92.3 25.8 27.8 20.7 44 178 G D + 0 0 86 16,-0.1 10,-2.7 9,-0.1 2,-0.3 0.527 360.0 66.7-105.2 -3.0 22.9 25.5 21.5 45 179 G d E -F 53 0B 39 8,-0.2 2,-0.4 14,-0.1 8,-0.2 -0.865 44.6-172.1-131.0 152.6 20.1 27.8 22.7 46 180 G V E -F 52 0B 4 6,-2.5 6,-2.7 -2,-0.3 2,-0.2 -0.994 31.6-113.4-135.6 142.5 17.7 30.6 21.8 47 181 G N E F 51 0B 108 -2,-0.4 4,-0.2 4,-0.2 11,-0.1 -0.550 360.0 360.0 -71.6 134.6 15.4 32.6 24.0 48 182 G I 0 0 39 2,-3.2 32,-0.0 -2,-0.2 20,-0.0 -0.867 360.0 360.0-124.4 360.0 11.7 32.2 23.5 49 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 50 211 H E 0 0 99 0, 0.0 -2,-3.2 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 165.9 12.6 30.5 28.7 51 212 H Q E - F 0 47B 68 -10,-2.2 -10,-2.5 -4,-0.2 2,-0.5 -0.944 360.0-147.1-125.6 148.0 15.0 28.9 26.3 52 213 H M E -EF 40 46B 0 -6,-2.7 -6,-2.5 -2,-0.4 2,-0.4 -0.984 27.0-175.7-109.8 125.0 15.0 26.3 23.7 53 214 H d E -EF 39 45B 11 -14,-2.8 -14,-2.6 -2,-0.5 2,-0.5 -0.958 16.3-153.5-126.6 136.6 18.3 24.4 23.5 54 215 H I E E 38 0B 10 -10,-2.7 -16,-0.2 -2,-0.4 7,-0.1 -0.958 360.0 360.0-109.6 126.2 19.5 21.7 21.1 55 216 H T 0 0 112 -18,-2.2 -18,-2.6 -2,-0.5 -2,-0.0 -0.882 360.0 360.0-130.3 360.0 22.1 19.2 22.3 56 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 57 177 I H 0 0 171 0, 0.0 2,-0.5 0, 0.0 12,-0.1 0.000 360.0 360.0 360.0 167.3 16.9 36.1 13.7 58 178 I D E +G 68 0C 112 10,-0.9 10,-2.8 -11,-0.1 2,-0.3 -0.789 360.0 170.7 -85.6 126.8 18.1 33.9 16.5 59 179 I e E -G 67 0C 24 -2,-0.5 2,-0.3 8,-0.2 8,-0.2 -0.897 27.2-152.2-131.0 165.5 18.6 30.3 15.4 60 180 I V E -G 66 0C 2 6,-2.4 6,-2.6 -2,-0.3 2,-0.3 -0.964 31.5-110.4-131.5 150.4 20.0 27.0 16.5 61 181 I N E G 65 0C 116 -18,-0.4 4,-0.3 -2,-0.3 -7,-0.1 -0.613 360.0 360.0 -75.9 143.1 21.3 24.2 14.3 62 182 I I 0 0 30 2,-2.5 -24,-0.0 -2,-0.3 -8,-0.0 -0.868 360.0 360.0-133.8 360.0 19.1 21.1 14.2 63 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 64 211 J E 0 0 96 0, 0.0 -2,-2.5 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 141.0 19.0 22.8 8.9 65 212 J Q E -G 61 0C 86 -4,-0.3 18,-2.3 -6,-0.0 2,-0.5 -0.937 360.0-149.9-130.0 146.5 18.0 25.5 11.4 66 213 J M E -GH 60 82C 0 -6,-2.6 -6,-2.4 -2,-0.3 2,-0.4 -0.989 29.8-175.0-112.8 122.1 15.3 26.4 13.8 67 214 J e E -GH 59 81C 11 14,-2.9 14,-2.8 -2,-0.5 2,-0.5 -0.922 23.7-135.9-122.1 146.0 14.8 30.1 14.2 68 215 J I E GH 58 80C 19 -10,-2.8 -10,-0.9 -2,-0.4 12,-0.2 -0.904 360.0 360.0-103.0 125.4 12.7 32.3 16.4 69 216 J T 0 0 82 10,-2.4 10,-2.3 -2,-0.5 -2,-0.0 -0.835 360.0 360.0-122.1 360.0 11.1 35.1 14.5 70 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 71 177 K H 0 0 220 0, 0.0 2,-0.4 0, 0.0 12,-0.1 0.000 360.0 360.0 360.0 141.0 7.2 28.7 5.4 72 178 K D + 0 0 45 10,-0.4 10,-2.7 -68,-0.1 2,-0.3 -0.802 360.0 128.9-132.1 83.7 7.6 25.9 8.0 73 179 K f E -I 81 0C 21 -2,-0.4 2,-0.3 8,-0.2 8,-0.2 -0.978 38.9-163.6-143.3 151.3 6.5 27.7 11.2 74 180 K V E -I 80 0C 0 6,-2.2 6,-2.7 -2,-0.3 2,-0.3 -0.980 35.8-106.0-135.5 143.8 4.4 27.5 14.3 75 181 K N E I 79 0C 102 -2,-0.3 4,-0.3 4,-0.2 -73,-0.0 -0.602 360.0 360.0 -63.3 129.8 3.4 30.2 16.8 76 182 K I 0 0 36 2,-1.9 3,-0.2 -2,-0.3 -1,-0.1 0.366 360.0 360.0-130.4 360.0 5.3 29.7 20.0 77 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 78 211 L E 0 0 109 0, 0.0 -2,-1.9 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 118.6 6.7 35.0 17.9 79 212 L Q E - I 0 75C 58 -10,-2.3 -10,-2.4 -4,-0.3 2,-0.5 -0.941 360.0-137.4-127.5 152.1 7.1 31.9 15.7 80 213 L M E -HI 68 74C 0 -6,-2.7 -6,-2.2 -2,-0.3 2,-0.3 -0.962 34.1-176.6-102.0 121.5 9.5 28.9 15.6 81 214 L f E -HI 67 73C 14 -14,-2.8 -14,-2.9 -2,-0.5 2,-0.4 -0.951 19.6-142.6-124.7 149.5 10.4 28.3 11.9 82 215 L I E H 66 0C 12 -10,-2.7 -10,-0.4 -2,-0.3 -16,-0.2 -0.890 360.0 360.0-109.7 132.9 12.5 25.6 10.2 83 216 L T 0 0 122 -18,-2.3 -17,-0.1 -2,-0.4 -1,-0.1 0.395 360.0 360.0-134.8 360.0 14.8 26.4 7.3