==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 10-NOV-06 2E29 . COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX50; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.OHNISHI,K.PAAKKONEN,P.GUNTERT,M.SATO,S.KOSHIBA,T.HARADA, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7448.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 53.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 127 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-108.6 4.9 23.7 -0.3 2 2 A S + 0 0 134 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.902 360.0 122.7-117.2 100.7 7.4 24.3 -3.1 3 3 A S - 0 0 115 -2,-0.6 2,-0.2 0, 0.0 3,-0.1 -0.739 65.4 -73.0-140.1-179.6 10.5 22.0 -2.9 4 4 A G S S- 0 0 68 -2,-0.2 -2,-0.0 1,-0.1 0, 0.0 -0.617 72.9 -70.5 -81.7 150.6 12.3 19.5 -5.1 5 5 A S - 0 0 118 -2,-0.2 3,-0.4 1,-0.1 -1,-0.1 -0.121 38.1-145.0 -48.3 125.6 10.6 16.1 -5.5 6 6 A S S S+ 0 0 123 1,-0.2 -1,-0.1 -3,-0.1 -2,-0.0 0.599 84.1 81.7 -67.4 -20.5 10.7 14.0 -2.3 7 7 A G + 0 0 65 2,-0.0 -1,-0.2 1,-0.0 -2,-0.0 0.943 65.0 159.8 -53.1 -58.0 11.1 10.6 -4.2 8 8 A F - 0 0 185 -3,-0.4 -2,-0.1 1,-0.2 -1,-0.0 0.051 53.3 -86.3 57.2-174.3 14.9 10.9 -4.7 9 9 A E - 0 0 176 3,-0.0 -1,-0.2 0, 0.0 3,-0.1 -0.784 50.6-172.3-128.8 81.4 17.2 7.9 -5.4 10 10 A P - 0 0 93 0, 0.0 2,-0.1 0, 0.0 -2,-0.0 -0.302 36.7 -82.1 -70.5 163.2 18.2 6.5 -2.0 11 11 A R - 0 0 233 1,-0.1 2,-0.4 -2,-0.0 0, 0.0 -0.428 42.6-118.3 -70.2 142.6 20.9 3.7 -1.7 12 12 A S - 0 0 108 -2,-0.1 2,-0.1 -3,-0.1 -1,-0.1 -0.661 28.0-135.4 -81.8 125.1 19.7 0.2 -2.3 13 13 A L - 0 0 154 -2,-0.4 2,-1.3 1,-0.1 -1,-0.0 -0.383 31.3 -94.2 -75.9 163.1 20.2 -2.0 0.8 14 14 A I - 0 0 147 -2,-0.1 2,-0.1 1,-0.0 -1,-0.1 -0.694 46.1-146.6 -80.6 94.0 21.7 -5.5 0.5 15 15 A T + 0 0 131 -2,-1.3 3,-0.1 1,-0.2 -3,-0.0 -0.435 47.9 126.4 -61.4 136.1 18.4 -7.4 0.3 16 16 A S + 0 0 108 1,-0.2 2,-1.0 -2,-0.1 -1,-0.2 0.132 49.0 63.4-153.7 -76.1 18.8 -10.8 2.0 17 17 A D - 0 0 151 1,-0.1 2,-1.5 0, 0.0 -1,-0.2 -0.515 65.3-159.2 -71.4 98.0 16.3 -11.9 4.8 18 18 A K + 0 0 167 -2,-1.0 3,-0.1 1,-0.2 -1,-0.1 -0.659 39.7 136.7 -79.2 85.4 13.0 -12.0 2.9 19 19 A G - 0 0 39 -2,-1.5 52,-0.6 1,-0.4 2,-0.2 0.811 64.8 -23.3 -93.4 -91.0 10.7 -11.7 6.0 20 20 A F E -A 70 0A 157 50,-0.1 -1,-0.4 51,-0.1 2,-0.3 -0.611 58.4-144.1-116.9 174.1 7.7 -9.3 5.5 21 21 A V E -A 69 0A 30 48,-1.6 48,-2.2 -2,-0.2 2,-0.3 -0.981 7.4-135.2-144.5 151.9 7.2 -6.4 3.1 22 22 A T E -A 68 0A 58 -2,-0.3 2,-0.3 69,-0.3 46,-0.2 -0.712 17.2-159.7-107.1 156.2 5.4 -3.0 3.4 23 23 A M E -A 67 0A 0 44,-2.8 44,-1.8 -2,-0.3 2,-0.3 -0.915 2.9-154.9-132.7 160.0 3.1 -1.4 0.8 24 24 A T E -AB 66 89A 21 65,-2.4 65,-1.9 -2,-0.3 2,-0.4 -0.946 2.9-163.0-136.1 150.7 1.8 2.1 0.0 25 25 A L E -AB 65 88A 1 40,-1.8 40,-2.1 -2,-0.3 2,-0.3 -0.941 16.3-149.0-138.9 109.6 -1.3 3.4 -1.7 26 26 A E E -AB 64 87A 87 61,-2.1 61,-1.2 -2,-0.4 38,-0.3 -0.701 12.6-145.4 -85.1 136.9 -1.2 7.1 -2.9 27 27 A S - 0 0 21 36,-2.9 3,-0.1 -2,-0.3 36,-0.1 -0.354 18.6-127.7 -94.2 172.5 -4.5 9.1 -3.0 28 28 A L S S- 0 0 121 1,-0.3 2,-0.2 -2,-0.1 -1,-0.1 0.739 90.2 -24.9 -88.0 -35.4 -5.8 11.9 -5.3 29 29 A E S S- 0 0 146 33,-0.1 -1,-0.3 1,-0.0 -2,-0.0 -0.817 98.8 -47.1-159.8-172.3 -6.5 14.2 -2.3 30 30 A E - 0 0 127 -2,-0.2 2,-0.2 -3,-0.1 33,-0.1 -0.301 53.2-151.5 -70.0 161.8 -7.3 13.7 1.4 31 31 A I - 0 0 35 31,-0.6 3,-0.1 1,-0.1 -1,-0.1 -0.646 23.9-108.9-125.7 176.9 -9.8 11.2 2.7 32 32 A Q S S- 0 0 180 1,-0.3 2,-0.3 -2,-0.2 -1,-0.1 0.971 80.7 -49.9 -73.9 -60.5 -12.1 10.8 5.7 33 33 A D S > S- 0 0 77 29,-0.0 3,-2.0 0, 0.0 4,-0.5 -0.893 74.0 -65.7-163.9 178.0 -10.4 7.9 7.6 34 34 A V T 3> S+ 0 0 30 1,-0.3 4,-2.9 -2,-0.3 5,-0.2 0.625 118.3 81.5 -53.6 -17.0 -8.9 4.4 6.8 35 35 A S H 3> S+ 0 0 43 2,-0.2 4,-2.9 1,-0.2 -1,-0.3 0.889 86.8 56.0 -57.1 -40.9 -12.6 3.4 6.1 36 36 A C H <> S+ 0 0 47 -3,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.968 112.1 40.4 -54.7 -58.0 -12.2 4.9 2.6 37 37 A A H > S+ 0 0 0 -4,-0.5 4,-3.0 1,-0.2 5,-0.3 0.929 115.7 51.2 -57.5 -51.1 -9.1 2.8 1.8 38 38 A W H X S+ 0 0 76 -4,-2.9 4,-2.5 1,-0.2 -1,-0.2 0.889 110.1 48.9 -57.1 -44.0 -10.6 -0.4 3.5 39 39 A K H X S+ 0 0 151 -4,-2.9 4,-0.6 2,-0.2 -1,-0.2 0.884 114.6 46.2 -63.2 -41.9 -13.9 -0.1 1.5 40 40 A E H >X S+ 0 0 26 -4,-2.0 3,-1.8 -5,-0.2 4,-0.7 0.972 112.4 48.6 -64.3 -53.9 -12.0 0.4 -1.8 41 41 A L H >X S+ 0 0 3 -4,-3.0 4,-2.2 1,-0.3 3,-1.5 0.899 107.6 56.8 -53.2 -44.0 -9.6 -2.5 -1.1 42 42 A N H 3< S+ 0 0 89 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.705 109.5 45.9 -62.2 -23.0 -12.7 -4.7 -0.2 43 43 A R H << S+ 0 0 219 -3,-1.8 -1,-0.3 -4,-0.6 -2,-0.2 0.449 121.0 38.1 -95.4 -6.8 -14.1 -3.9 -3.7 44 44 A K H << S+ 0 0 38 -3,-1.5 2,-0.3 -4,-0.7 -2,-0.2 0.495 118.3 43.4-120.3 -11.5 -10.7 -4.6 -5.5 45 45 A L S < S- 0 0 12 -4,-2.2 2,-0.1 -5,-0.2 -1,-0.1 -0.876 86.0-102.2-133.9 160.0 -9.4 -7.6 -3.4 46 46 A S > - 0 0 68 -2,-0.3 4,-3.2 1,-0.1 5,-0.2 -0.455 32.2-114.7 -79.7 157.9 -11.0 -10.8 -2.1 47 47 A S H > S+ 0 0 75 1,-0.2 4,-1.8 2,-0.2 -1,-0.1 0.915 118.4 53.3 -57.7 -41.6 -11.9 -11.1 1.6 48 48 A N H 4 S+ 0 0 128 1,-0.2 -1,-0.2 2,-0.2 4,-0.1 0.896 116.4 36.6 -59.3 -48.9 -9.2 -13.8 1.9 49 49 A A H >4 S+ 0 0 9 1,-0.2 3,-1.8 2,-0.2 4,-0.3 0.867 111.6 57.4 -76.2 -42.9 -6.5 -11.6 0.4 50 50 A V H >< S+ 0 0 7 -4,-3.2 3,-1.9 1,-0.3 -2,-0.2 0.863 96.9 66.0 -60.6 -32.2 -7.6 -8.3 2.0 51 51 A S T 3< S+ 0 0 91 -4,-1.8 -1,-0.3 1,-0.3 -2,-0.2 0.645 86.5 70.1 -62.6 -18.5 -7.3 -10.0 5.4 52 52 A Q T < S+ 0 0 83 -3,-1.8 2,-0.3 -4,-0.1 -1,-0.3 0.699 76.7 101.1 -72.8 -17.9 -3.5 -10.3 4.9 53 53 A I < + 0 0 10 -3,-1.9 2,-0.3 -4,-0.3 16,-0.2 -0.543 51.8 168.3 -70.5 124.8 -3.3 -6.4 5.2 54 54 A T E +C 68 0A 68 14,-2.3 14,-2.6 -2,-0.3 -2,-0.0 -0.862 49.9 25.2-133.8 165.5 -2.0 -5.5 8.7 55 55 A R E - 0 0 190 -2,-0.3 2,-0.5 12,-0.2 -1,-0.1 0.779 69.6-179.9 50.5 34.2 -0.8 -2.3 10.4 56 56 A M E + 0 0 28 11,-0.1 2,-0.3 -3,-0.1 11,-0.2 -0.593 9.2 168.6 -68.0 119.6 -2.7 -0.0 8.0 57 57 A C E -C 66 0A 79 9,-2.3 9,-1.7 -2,-0.5 2,-0.4 -0.800 39.3-102.1-127.2 160.1 -1.9 3.5 9.2 58 58 A L E -C 65 0A 52 -2,-0.3 7,-0.2 7,-0.2 3,-0.0 -0.771 40.9-119.2 -85.5 131.5 -2.5 7.0 7.6 59 59 A L > - 0 0 58 5,-2.5 3,-2.0 -2,-0.4 2,-1.1 -0.191 39.1 -86.5 -65.5 163.0 0.6 8.5 6.0 60 60 A K T 3 S+ 0 0 213 1,-0.3 -1,-0.1 2,-0.1 5,-0.0 -0.654 124.7 32.5 -74.3 102.7 1.9 11.8 7.2 61 61 A G T 3 S- 0 0 41 -2,-1.1 -1,-0.3 3,-0.1 -2,-0.1 0.219 106.3-112.0 130.2 -5.9 -0.2 14.1 5.1 62 62 A N S < S+ 0 0 64 -3,-2.0 -31,-0.6 2,-0.2 -33,-0.1 0.617 87.5 119.1 56.5 17.2 -3.5 12.0 4.8 63 63 A M S S- 0 0 91 -33,-0.1 -36,-2.9 1,-0.1 2,-0.3 0.110 80.8 -19.6 -95.4 12.2 -2.6 11.6 1.1 64 64 A G E -A 26 0A 0 -38,-0.3 -5,-2.5 -5,-0.2 2,-0.3 -0.941 67.7 -96.3 167.4-178.5 -2.3 7.8 1.3 65 65 A V E -AC 25 58A 1 -40,-2.1 -40,-1.8 -2,-0.3 2,-0.3 -0.803 14.0-155.5-123.4 164.8 -1.8 4.7 3.4 66 66 A C E +AC 24 57A 35 -9,-1.7 -9,-2.3 -2,-0.3 2,-0.3 -0.980 25.6 155.3-139.4 135.1 1.0 2.4 4.5 67 67 A F E -A 23 0A 4 -44,-1.8 -44,-2.8 -2,-0.3 2,-0.3 -0.950 34.3-115.1-154.3 169.5 0.4 -1.2 5.5 68 68 A D E +AC 22 54A 33 -14,-2.6 -14,-2.3 -2,-0.3 -46,-0.2 -0.854 30.1 167.9-114.4 150.8 2.3 -4.6 5.7 69 69 A V E -A 21 0A 1 -48,-2.2 -48,-1.6 -2,-0.3 -16,-0.1 -0.946 41.6 -86.8-152.2 160.6 1.6 -7.9 3.8 70 70 A P E > -A 20 0A 30 0, 0.0 4,-2.0 0, 0.0 -50,-0.1 -0.411 38.8-114.8 -73.5 155.3 3.4 -11.2 3.3 71 71 A T H > S+ 0 0 51 -52,-0.6 4,-0.6 1,-0.2 -51,-0.1 0.679 114.4 55.7 -62.9 -20.3 5.9 -11.4 0.4 72 72 A T H >> S+ 0 0 105 2,-0.2 4,-0.9 1,-0.1 3,-0.9 0.967 110.7 39.8 -76.4 -58.6 3.7 -14.0 -1.3 73 73 A E H 3> S+ 0 0 54 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.782 100.7 79.2 -63.6 -25.9 0.4 -12.0 -1.4 74 74 A S H 3X S+ 0 0 9 -4,-2.0 4,-1.7 1,-0.2 -1,-0.2 0.871 97.2 41.6 -50.2 -47.3 2.6 -8.9 -2.3 75 75 A E H