==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 05-AUG-08 3E2B . COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 1, CYTOPLASMIC; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR G.BENISON,E.BARBAR,P.A.KARPLUS . 97 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5610.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 68 70.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 32.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 29.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A D 0 0 200 0, 0.0 2,-0.3 0, 0.0 76,-0.0 0.000 360.0 360.0 360.0 -80.2 3.9 -10.6 3.3 2 4 A R - 0 0 60 74,-0.0 2,-0.5 75,-0.0 22,-0.0 -0.729 360.0-122.4-108.0 144.9 4.9 -11.8 -0.2 3 5 A K - 0 0 157 -2,-0.3 74,-2.2 2,-0.0 2,-0.7 -0.706 15.7-147.5 -93.3 120.7 4.2 -15.2 -1.9 4 6 A A E +A 76 0A 47 -2,-0.5 2,-0.5 72,-0.2 72,-0.2 -0.750 20.1 176.1 -86.3 113.3 7.2 -17.3 -3.2 5 7 A V E -A 75 0A 51 70,-2.5 70,-3.0 -2,-0.7 2,-0.5 -0.953 18.7-149.9-119.7 110.7 6.2 -19.2 -6.3 6 8 A I E +A 74 0A 70 -2,-0.5 68,-0.2 68,-0.2 3,-0.1 -0.699 18.2 176.3 -83.4 124.1 9.1 -21.2 -7.9 7 9 A K E + 0 0 103 66,-2.2 2,-0.3 -2,-0.5 67,-0.2 0.871 65.7 0.5 -97.0 -47.5 8.7 -21.4 -11.7 8 10 A N E +A 73 0A 64 65,-2.0 65,-3.1 2,-0.0 -1,-0.4 -0.986 68.9 173.1-147.3 135.3 11.8 -23.2 -12.9 9 11 A A E +A 72 0A 34 -2,-0.3 2,-0.3 63,-0.2 63,-0.2 -0.997 27.2 178.9-147.8 138.4 14.7 -24.5 -11.0 10 12 A D E +A 71 0A 35 61,-3.3 61,-2.0 -2,-0.3 2,-0.3 -0.755 62.5 98.3-130.1 84.3 17.8 -26.6 -11.5 11 13 A M E S-A 70 0A 5 -2,-0.3 59,-0.1 59,-0.2 58,-0.1 -0.959 80.6 -87.4-171.8 139.9 19.0 -26.3 -7.9 12 14 A S > - 0 0 26 57,-0.5 4,-1.9 -2,-0.3 5,-0.1 -0.216 40.9-117.7 -56.1 150.6 19.1 -28.3 -4.6 13 15 A E H > S+ 0 0 154 1,-0.2 4,-1.9 2,-0.2 5,-0.2 0.847 114.8 57.9 -61.8 -34.3 16.0 -27.7 -2.5 14 16 A E H > S+ 0 0 159 1,-0.2 4,-1.6 2,-0.2 -1,-0.2 0.940 109.0 42.7 -58.0 -51.4 18.2 -26.3 0.2 15 17 A M H > S+ 0 0 22 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.788 107.8 60.9 -71.5 -28.0 19.6 -23.6 -2.1 16 18 A Q H X S+ 0 0 36 -4,-1.9 4,-2.2 2,-0.2 -1,-0.2 0.936 106.2 46.8 -62.2 -45.0 16.2 -22.8 -3.5 17 19 A Q H X S+ 0 0 102 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.872 109.9 54.1 -63.9 -37.5 15.0 -21.9 0.0 18 20 A D H X S+ 0 0 47 -4,-1.6 4,-2.5 2,-0.2 -1,-0.2 0.876 107.7 50.9 -61.2 -39.3 18.2 -19.8 0.4 19 21 A A H X S+ 0 0 0 -4,-2.1 4,-2.4 2,-0.2 -2,-0.2 0.928 111.2 46.5 -64.1 -48.4 17.3 -17.9 -2.8 20 22 A V H X S+ 0 0 11 -4,-2.2 4,-1.8 1,-0.2 -2,-0.2 0.881 113.6 49.9 -62.0 -39.7 13.7 -17.2 -1.6 21 23 A D H X S+ 0 0 79 -4,-2.4 4,-2.3 2,-0.2 -2,-0.2 0.916 111.0 49.0 -62.5 -47.0 15.1 -16.1 1.8 22 24 A C H X S+ 0 0 2 -4,-2.5 4,-2.8 1,-0.2 -2,-0.2 0.899 111.1 48.5 -60.8 -46.4 17.6 -13.8 0.2 23 25 A A H X S+ 0 0 0 -4,-2.4 4,-2.8 2,-0.2 -1,-0.2 0.856 109.7 53.2 -65.5 -35.2 15.1 -12.2 -2.1 24 26 A T H X S+ 0 0 34 -4,-1.8 4,-1.8 2,-0.2 -2,-0.2 0.924 111.4 45.8 -65.2 -44.0 12.7 -11.6 0.8 25 27 A Q H X S+ 0 0 95 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.918 112.8 51.4 -60.6 -44.0 15.6 -9.9 2.6 26 28 A A H X S+ 0 0 0 -4,-2.8 4,-3.5 1,-0.2 -2,-0.2 0.915 110.5 47.1 -61.0 -45.3 16.4 -7.9 -0.5 27 29 A L H < S+ 0 0 33 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.801 110.6 53.9 -68.8 -29.1 12.8 -6.8 -1.0 28 30 A E H < S+ 0 0 140 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.869 119.8 33.0 -66.5 -38.5 12.6 -5.8 2.8 29 31 A K H < S+ 0 0 136 -4,-2.0 2,-0.3 -5,-0.1 -2,-0.2 0.870 120.0 41.1 -88.4 -41.1 15.7 -3.7 2.4 30 32 A Y < - 0 0 72 -4,-3.5 -1,-0.1 -5,-0.2 3,-0.0 -0.824 42.8-172.8-119.1 152.5 15.5 -2.2 -1.2 31 33 A N + 0 0 154 -2,-0.3 2,-0.4 -3,-0.0 -1,-0.1 0.644 68.1 82.6-107.0 -26.2 12.8 -0.8 -3.5 32 34 A I S >> S- 0 0 101 1,-0.1 4,-2.3 2,-0.0 3,-0.8 -0.707 75.9-134.3 -92.1 133.6 14.7 -0.5 -6.8 33 35 A E H 3> S+ 0 0 84 -2,-0.4 4,-2.9 1,-0.3 5,-0.2 0.858 103.3 51.8 -57.9 -42.7 15.1 -3.6 -8.9 34 36 A K H 3> S+ 0 0 159 1,-0.2 4,-2.0 2,-0.2 -1,-0.3 0.837 111.5 48.5 -63.5 -32.7 18.8 -3.2 -9.6 35 37 A D H <> S+ 0 0 59 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.893 111.5 48.7 -72.7 -41.3 19.5 -2.8 -5.9 36 38 A I H X S+ 0 0 4 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.943 113.0 48.6 -59.9 -49.1 17.4 -5.9 -5.1 37 39 A A H X S+ 0 0 10 -4,-2.9 4,-2.7 1,-0.2 -2,-0.2 0.898 110.4 51.0 -55.8 -45.9 19.2 -7.8 -7.8 38 40 A A H X S+ 0 0 36 -4,-2.0 4,-2.4 2,-0.2 5,-0.2 0.871 108.5 51.5 -62.5 -40.3 22.7 -6.7 -6.5 39 41 A Y H X S+ 0 0 38 -4,-2.1 4,-1.6 2,-0.2 -1,-0.2 0.949 113.5 43.9 -61.7 -49.2 21.9 -7.8 -3.0 40 42 A I H X S+ 0 0 0 -4,-2.1 4,-1.8 2,-0.2 -2,-0.2 0.934 115.1 49.0 -62.9 -47.9 20.8 -11.2 -4.1 41 43 A K H X S+ 0 0 52 -4,-2.7 4,-2.6 1,-0.2 3,-0.3 0.947 111.1 47.6 -56.4 -54.5 23.8 -11.6 -6.5 42 44 A K H X S+ 0 0 132 -4,-2.4 4,-1.8 1,-0.2 -1,-0.2 0.817 110.4 52.5 -61.9 -33.8 26.5 -10.6 -4.0 43 45 A E H X S+ 0 0 40 -4,-1.6 4,-3.1 -5,-0.2 -1,-0.2 0.853 111.2 46.5 -73.1 -35.2 25.2 -12.8 -1.3 44 46 A F H X S+ 0 0 0 -4,-1.8 4,-3.0 -3,-0.3 5,-0.2 0.872 110.3 52.4 -74.1 -36.2 25.2 -15.8 -3.6 45 47 A D H X S+ 0 0 36 -4,-2.6 4,-0.9 3,-0.2 -2,-0.2 0.906 115.5 44.2 -59.5 -40.7 28.7 -15.0 -4.8 46 48 A K H < S+ 0 0 155 -4,-1.8 -2,-0.2 -5,-0.2 3,-0.2 0.979 123.8 32.4 -66.4 -57.4 29.6 -14.9 -1.1 47 49 A K H < S+ 0 0 98 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.2 0.883 134.4 23.2 -72.5 -42.5 27.8 -18.0 0.0 48 50 A Y H < S- 0 0 57 -4,-3.0 -1,-0.2 -5,-0.2 -3,-0.2 0.227 109.6-106.9-116.4 14.8 28.1 -20.2 -3.1 49 51 A N < - 0 0 109 -4,-0.9 -3,-0.1 -5,-0.2 -1,-0.1 0.361 55.8 -25.8 76.7 148.8 31.1 -18.8 -4.9 50 52 A P S S+ 0 0 74 0, 0.0 37,-0.1 0, 0.0 35,-0.1 -0.274 92.5 48.6 -60.8 154.9 31.3 -16.8 -8.1 51 53 A T + 0 0 41 35,-0.2 35,-2.6 33,-0.1 2,-0.2 0.188 56.3 146.8-128.7 117.0 29.9 -16.2 -10.5 52 54 A W E -B 85 0A 0 33,-0.2 2,-0.4 -11,-0.2 33,-0.2 -0.615 22.5-162.1 -98.3 157.0 26.2 -15.4 -10.1 53 55 A H E -B 84 0A 67 31,-2.3 31,-1.9 -2,-0.2 2,-0.4 -0.996 7.3-161.8-137.0 139.9 23.9 -13.1 -12.1 54 56 A C E -B 83 0A 17 -2,-0.4 2,-0.4 29,-0.2 29,-0.2 -0.983 9.2-173.1-132.8 131.7 20.5 -11.7 -11.0 55 57 A I E -B 82 0A 74 27,-2.6 27,-2.9 -2,-0.4 2,-0.4 -0.980 7.3-176.6-119.9 133.5 17.6 -10.2 -12.8 56 58 A V E +B 81 0A 12 -2,-0.4 2,-0.3 25,-0.2 25,-0.2 -0.989 26.7 105.8-132.1 123.2 14.6 -8.7 -11.0 57 59 A G E -B 80 0A 4 23,-2.2 23,-2.6 -2,-0.4 3,-0.2 -0.990 63.6-114.2-179.8 174.7 11.6 -7.2 -12.6 58 60 A R S S+ 0 0 149 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.629 103.2 35.6 -99.5 -18.2 7.9 -7.3 -13.7 59 61 A N S S+ 0 0 138 21,-0.1 2,-0.3 -3,-0.1 -1,-0.2 -0.796 79.2 107.9-144.2 100.4 8.5 -7.5 -17.4 60 62 A F - 0 0 34 -2,-0.3 37,-2.0 -3,-0.2 2,-0.3 -0.967 39.0-153.4-161.6 150.6 11.3 -9.4 -19.0 61 63 A G E -D 96 0B 44 -2,-0.3 2,-0.3 35,-0.2 35,-0.2 -0.904 24.5-171.0-116.6 155.2 12.1 -12.5 -21.0 62 64 A S E -D 95 0B 25 33,-2.6 33,-1.8 -2,-0.3 2,-0.3 -0.964 25.0-165.4-144.2 159.8 15.6 -14.1 -20.9 63 65 A Y E +D 94 0B 179 -2,-0.3 2,-0.3 31,-0.2 31,-0.2 -0.860 32.0 156.6-145.7 110.7 17.8 -16.7 -22.5 64 66 A V E -D 93 0B 25 29,-2.3 29,-2.9 -2,-0.3 2,-0.5 -0.840 38.0-126.9-133.3 164.4 20.9 -17.6 -20.5 65 67 A T E +D 92 0B 66 -2,-0.3 2,-0.3 27,-0.2 27,-0.2 -0.971 32.4 178.6-115.9 129.9 23.4 -20.4 -20.0 66 68 A H E -D 91 0B 0 25,-2.7 25,-2.6 -2,-0.5 2,-0.3 -0.906 34.7-102.5-129.3 156.5 24.0 -21.8 -16.5 67 69 A E E > -D 90 0B 49 18,-2.4 3,-1.7 -2,-0.3 18,-0.3 -0.589 58.0 -90.7 -73.0 138.1 26.0 -24.4 -14.8 68 70 A T T 3 S+ 0 0 63 21,-3.0 -1,-0.1 -2,-0.3 -57,-0.0 -0.136 112.8 20.0 -52.9 143.1 23.9 -27.5 -13.9 69 71 A R T 3 S+ 0 0 127 -3,-0.1 -57,-0.5 -58,-0.1 -1,-0.3 0.559 106.3 91.1 72.5 9.1 22.3 -27.3 -10.5 70 72 A H E < +A 11 0A 49 -3,-1.7 15,-2.2 -59,-0.1 2,-0.3 -0.336 60.8 95.1-130.9 54.6 22.8 -23.5 -10.3 71 73 A F E +AC 10 84A 0 -61,-2.0 -61,-3.3 13,-0.2 2,-0.3 -0.986 35.9 167.0-146.1 131.4 19.6 -22.0 -11.8 72 74 A I E -AC 9 83A 0 11,-2.2 11,-2.7 -2,-0.3 2,-0.4 -0.984 9.6-176.2-144.4 137.1 16.4 -20.6 -10.3 73 75 A Y E +AC 8 82A 11 -65,-3.1 -66,-2.2 -2,-0.3 -65,-2.0 -0.984 27.4 149.4-129.5 120.8 13.6 -18.6 -11.7 74 76 A F E -AC 6 81A 0 7,-2.6 7,-3.7 -2,-0.4 2,-0.4 -0.975 41.6-122.9-152.0 158.0 10.9 -17.5 -9.3 75 77 A Y E -AC 5 80A 24 -70,-3.0 -70,-2.5 -2,-0.3 2,-0.4 -0.851 15.5-174.0-100.6 139.5 8.3 -15.0 -8.3 76 78 A L E > S-AC 4 79A 4 3,-2.5 3,-1.0 -2,-0.4 2,-0.3 -0.884 73.5 -41.3-131.7 100.7 8.3 -13.3 -4.9 77 79 A G T 3 S- 0 0 33 -74,-2.2 -72,-0.1 -2,-0.4 -75,-0.0 -0.617 121.5 -28.0 72.7-136.5 5.1 -11.3 -4.8 78 80 A Q T 3 S+ 0 0 151 -2,-0.3 2,-0.4 -3,-0.1 -1,-0.2 0.349 121.4 89.5 -95.0 7.2 4.5 -9.5 -8.1 79 81 A V E < - C 0 76A 11 -3,-1.0 -3,-2.5 18,-0.0 2,-0.4 -0.841 68.2-140.6-105.6 139.9 8.2 -9.4 -9.0 80 82 A A E -BC 57 75A 0 -23,-2.6 -23,-2.2 -2,-0.4 2,-0.5 -0.784 13.1-159.2 -97.6 144.0 10.1 -12.1 -10.9 81 83 A I E -BC 56 74A 0 -7,-3.7 -7,-2.6 -2,-0.4 2,-0.5 -0.980 7.3-169.9-128.5 120.9 13.6 -13.1 -10.0 82 84 A L E +BC 55 73A 0 -27,-2.9 -27,-2.6 -2,-0.5 2,-0.4 -0.948 14.1 172.4-107.2 125.6 16.1 -14.9 -12.2 83 85 A L E +BC 54 72A 0 -11,-2.7 -11,-2.2 -2,-0.5 2,-0.3 -0.964 8.4 149.0-140.0 120.5 19.3 -16.1 -10.4 84 86 A F E -BC 53 71A 17 -31,-1.9 -31,-2.3 -2,-0.4 2,-0.5 -0.983 39.0-121.3-152.1 157.0 21.9 -18.3 -12.0 85 87 A K E +B 52 0A 22 -15,-2.2 -18,-2.4 -2,-0.3 2,-0.3 -0.888 34.0 157.3-104.4 125.9 25.6 -19.1 -12.0 86 88 A S 0 0 45 -35,-2.6 -35,-0.2 -2,-0.5 -20,-0.1 -0.825 360.0 360.0-148.7 110.6 27.7 -18.8 -15.1 87 89 A G 0 0 84 -2,-0.3 -20,-0.1 -37,-0.1 -1,-0.1 -0.410 360.0 360.0 107.3 360.0 31.5 -18.3 -14.9 88 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 89 287 C A 0 0 113 0, 0.0 -21,-3.0 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -20.9 28.1 -29.1 -17.3 90 288 C T E -D 67 0B 86 -23,-0.3 2,-0.3 -21,-0.0 -23,-0.2 -0.892 360.0-168.4-126.8 156.0 25.9 -26.2 -18.6 91 289 C S E -D 66 0B 41 -25,-2.6 -25,-2.7 -2,-0.3 2,-0.4 -0.942 21.8-121.9-136.1 159.8 22.4 -25.8 -19.9 92 290 C A E -D 65 0B 48 -2,-0.3 2,-0.4 -27,-0.2 -27,-0.2 -0.875 28.7-168.9-103.3 137.7 20.4 -23.1 -21.7 93 291 C K E -D 64 0B 38 -29,-2.9 -29,-2.3 -2,-0.4 2,-0.4 -0.978 12.1-156.8-128.5 139.9 17.2 -21.7 -20.1 94 292 C A E -D 63 0B 65 -2,-0.4 2,-0.3 -31,-0.2 -31,-0.2 -0.933 14.4-176.7-109.4 138.1 14.5 -19.4 -21.3 95 293 C T E -D 62 0B 9 -33,-1.8 -33,-2.6 -2,-0.4 2,-0.3 -0.976 4.6-175.9-129.7 147.4 12.3 -17.4 -18.9 96 294 C Q E -D 61 0B 121 -2,-0.3 -35,-0.2 -35,-0.2 2,-0.1 -0.975 23.5-129.5-143.4 129.8 9.3 -15.2 -19.5 97 295 C T 0 0 6 -37,-2.0 -39,-0.1 -2,-0.3 -38,-0.0 -0.481 360.0 360.0 -68.8 147.0 7.3 -13.0 -17.1 98 296 C D 0 0 146 -2,-0.1 -1,-0.1 -39,-0.0 -38,-0.1 0.217 360.0 360.0-103.2 360.0 3.6 -13.6 -17.3