==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 04-DEC-06 2E45 . COMPND 2 MOLECULE: AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.KOUNO,M.MIZUGUCHI,Y.NOZAWA,T.SUGAYA,K.KAWANO . 50 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4825.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 48.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 20.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 18.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 195 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -33.8 -18.2 4.5 3.1 2 2 A S > - 0 0 85 1,-0.1 3,-0.5 3,-0.0 6,-0.1 -0.693 360.0 -54.4-112.9 81.3 -17.1 7.1 5.8 3 3 A F T 3 S- 0 0 215 -2,-0.7 -1,-0.1 1,-0.2 0, 0.0 0.773 96.6 -74.6 60.3 21.0 -16.1 10.2 3.9 4 4 A W T 3 - 0 0 210 2,-0.0 -1,-0.2 1,-0.0 0, 0.0 0.976 68.1-148.4 57.1 55.7 -13.7 8.0 1.9 5 5 A N < - 0 0 83 -3,-0.5 -2,-0.1 1,-0.1 -3,-0.0 0.009 20.6-110.5 -48.9 165.5 -11.3 7.7 4.8 6 6 A P S S+ 0 0 112 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.768 114.4 42.6 -72.9 -26.5 -7.6 7.3 4.0 7 7 A N S > S+ 0 0 134 2,-0.1 3,-1.3 3,-0.0 -2,-0.0 0.952 76.5 127.3 -84.1 -71.1 -7.6 3.7 5.2 8 8 A A T 3 S- 0 0 48 1,-0.2 2,-0.0 -6,-0.1 0, 0.0 0.050 88.0 -59.5 42.4-160.2 -10.8 2.1 3.9 9 9 A F T 3 S+ 0 0 200 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 -0.256 88.6 138.2-109.0 47.5 -10.3 -1.1 2.0 10 10 A E < - 0 0 105 -3,-1.3 3,-0.1 1,-0.1 -3,-0.0 0.176 60.8 -69.4 -72.8-159.5 -8.0 0.2 -0.8 11 11 A T S S- 0 0 115 1,-0.1 -1,-0.1 2,-0.1 9,-0.0 0.067 73.0 -57.7 -79.4-162.5 -4.9 -1.6 -2.1 12 12 A D - 0 0 39 1,-0.1 -1,-0.1 -3,-0.1 -2,-0.0 0.369 58.8-102.3 -58.3-153.7 -1.7 -2.1 -0.2 13 13 A S S S- 0 0 81 -3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.832 79.8 -45.8-104.3 -53.4 0.2 0.9 1.2 14 14 A D + 0 0 141 2,-0.0 -3,-0.0 0, 0.0 0, 0.0 0.018 69.2 171.2-178.0 54.2 3.2 1.4 -1.2 15 15 A L - 0 0 27 4,-0.1 3,-0.1 1,-0.1 29,-0.1 -0.154 41.1 -92.0 -67.7 171.3 5.1 -1.8 -2.1 16 16 A P > - 0 0 59 0, 0.0 3,-0.9 0, 0.0 2,-0.6 0.091 59.5 -68.2 -70.4-170.8 7.7 -1.8 -4.8 17 17 A A T 3 S+ 0 0 102 1,-0.2 3,-0.1 3,-0.0 0, 0.0 -0.732 121.6 19.7 -88.1 121.3 7.0 -2.7 -8.5 18 18 A G T 3 S+ 0 0 27 -2,-0.6 15,-2.2 1,-0.3 2,-0.4 0.506 100.6 107.1 102.1 6.0 6.0 -6.3 -9.0 19 19 A W E < -A 32 0A 24 -3,-0.9 -1,-0.3 13,-0.2 2,-0.3 -0.949 47.9-166.4-120.0 136.5 5.0 -7.0 -5.3 20 20 A M E -A 31 0A 59 11,-1.6 11,-1.1 -2,-0.4 2,-0.6 -0.754 17.6-131.7-116.3 166.2 1.5 -7.4 -4.0 21 21 A R E +A 30 0A 112 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.907 31.0 173.9-120.2 106.4 -0.0 -7.4 -0.5 22 22 A V E -A 29 0A 46 7,-1.2 7,-1.2 -2,-0.6 2,-0.5 -0.720 28.1-139.4-109.4 162.4 -2.4 -10.3 0.2 23 23 A Q E +A 28 0A 133 5,-0.3 5,-0.3 -2,-0.3 -2,-0.0 -0.696 28.5 178.6-120.6 80.5 -4.2 -11.3 3.5 24 24 A D E > -A 27 0A 80 3,-1.5 3,-0.5 -2,-0.5 0, 0.0 -0.246 48.8 -97.6 -74.9 169.6 -4.1 -15.1 3.7 25 25 A T T 3 S+ 0 0 140 1,-0.2 -1,-0.1 3,-0.0 3,-0.1 0.786 127.5 54.1 -59.7 -22.5 -5.5 -16.9 6.7 26 26 A S T 3 S- 0 0 101 1,-0.3 2,-0.3 0, 0.0 -1,-0.2 0.839 126.8 -74.3 -81.3 -32.1 -2.0 -17.1 8.1 27 27 A G E < -A 24 0A 28 -3,-0.5 -3,-1.5 0, 0.0 2,-0.7 -0.907 61.9 -51.9 157.1 175.9 -1.4 -13.3 7.8 28 28 A T E +A 23 0A 42 -5,-0.3 -5,-0.3 -2,-0.3 2,-0.1 -0.666 65.9 160.0 -81.1 113.2 -0.8 -10.5 5.3 29 29 A Y E -A 22 0A 28 -7,-1.2 -7,-1.2 -2,-0.7 2,-0.4 -0.264 37.7 -96.2-114.4-156.2 2.1 -11.5 3.2 30 30 A Y E -AB 21 39A 22 9,-1.9 9,-2.0 -9,-0.2 2,-0.6 -0.988 20.1-150.6-131.8 135.2 3.5 -10.4 -0.3 31 31 A W E -AB 20 38A 125 -11,-1.1 -11,-1.6 -2,-0.4 2,-0.8 -0.889 14.6-141.4-107.0 118.1 2.9 -12.0 -3.7 32 32 A H E > -A 19 0A 38 5,-2.4 4,-1.0 -2,-0.6 -13,-0.2 -0.644 13.7-170.7 -80.1 109.6 5.7 -11.6 -6.2 33 33 A I T 4 S+ 0 0 84 -15,-2.2 -1,-0.2 -2,-0.8 -14,-0.1 0.859 81.6 47.5 -67.8 -36.9 4.1 -11.1 -9.6 34 34 A P T 4 S+ 0 0 89 0, 0.0 -1,-0.1 0, 0.0 -15,-0.1 0.987 131.0 15.6 -72.3 -62.2 7.4 -11.3 -11.6 35 35 A T T 4 S- 0 0 86 -17,-0.2 -2,-0.2 2,-0.1 3,-0.1 0.709 94.1-133.9 -86.4 -18.2 9.0 -14.5 -10.1 36 36 A G < + 0 0 40 -4,-1.0 -4,-0.2 1,-0.2 -3,-0.1 0.298 59.2 138.6 84.4 -14.0 5.7 -15.6 -8.5 37 37 A T - 0 0 70 -6,-0.1 -5,-2.4 1,-0.1 2,-0.3 -0.150 45.7-135.8 -59.2 161.0 7.7 -16.3 -5.3 38 38 A T E +B 31 0A 79 -7,-0.2 2,-0.2 -3,-0.1 -7,-0.2 -0.885 23.5 176.1-121.2 154.2 6.0 -15.3 -2.0 39 39 A Q E -B 30 0A 80 -9,-2.0 -9,-1.9 -2,-0.3 -7,-0.0 -0.801 28.6-144.3-142.0-175.6 7.4 -13.6 1.1 40 40 A W S S+ 0 0 156 -2,-0.2 -12,-0.1 -11,-0.2 -9,-0.0 0.342 74.1 72.7-136.8 1.9 6.3 -12.2 4.5 41 41 A E S S- 0 0 140 -11,-0.1 -2,-0.0 0, 0.0 -12,-0.0 -0.833 90.9 -91.8-120.0 160.2 8.4 -9.0 4.9 42 42 A P - 0 0 99 0, 0.0 2,-0.7 0, 0.0 -12,-0.0 -0.581 39.3-140.1 -72.6 110.7 8.4 -5.6 3.3 43 43 A P + 0 0 30 0, 0.0 -24,-0.0 0, 0.0 -4,-0.0 -0.594 46.4 140.0 -74.2 110.9 10.8 -5.8 0.3 44 44 A G - 0 0 64 -2,-0.7 2,-0.8 -29,-0.1 -29,-0.0 -0.331 24.8-176.3-150.9 62.8 12.7 -2.5 0.2 45 45 A R + 0 0 229 1,-0.1 2,-0.3 2,-0.0 0, 0.0 -0.468 24.2 149.1 -65.4 105.8 16.3 -3.0 -0.6 46 46 A A + 0 0 83 -2,-0.8 3,-0.1 2,-0.0 -1,-0.1 -0.784 17.3 170.8-144.5 99.2 17.8 0.5 -0.4 47 47 A S > + 0 0 73 -2,-0.3 3,-0.8 3,-0.2 -2,-0.0 -0.753 3.8 170.5-112.3 87.9 21.4 1.1 0.7 48 48 A P T 3 S+ 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.502 76.1 66.2 -72.4 -2.5 22.2 4.8 0.2 49 49 A S T 3 0 0 119 1,-0.3 -2,-0.1 -3,-0.1 0, 0.0 0.787 360.0 360.0 -89.7 -28.8 25.5 4.2 2.1 50 50 A Q < 0 0 223 -3,-0.8 -1,-0.3 0, 0.0 -3,-0.2 -0.948 360.0 360.0-131.1 360.0 27.0 1.9 -0.6