==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA EXCISION REPAIR 14-JUL-00 1E52 . COMPND 2 MOLECULE: EXCINUCLEASE ABC SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR A.A.ALEXANDROVICH,G.G.KELLY,T.A.FRENKIEL,G.F.MOOLENAAR, . 112 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9235.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 90 80.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 24 21.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 62 55.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A L 0 0 198 0, 0.0 4,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 150.7 -23.1 33.8 -25.5 2 9 A E + 0 0 138 1,-0.1 3,-0.0 2,-0.1 0, 0.0 0.954 360.0 158.4 53.0 52.0 -23.7 30.6 -23.4 3 10 A P > + 0 0 82 0, 0.0 3,-2.3 0, 0.0 -1,-0.1 0.927 67.6 55.3 -73.0 -46.6 -20.1 29.5 -23.9 4 11 A D T 3 S+ 0 0 145 1,-0.3 4,-0.2 2,-0.2 -2,-0.1 0.761 114.0 44.2 -59.7 -20.0 -20.0 27.2 -20.8 5 12 A N T 3 S+ 0 0 126 1,-0.1 -1,-0.3 2,-0.1 4,-0.1 0.226 96.9 77.9-108.3 14.7 -23.0 25.4 -22.4 6 13 A V S < S+ 0 0 108 -3,-2.3 -2,-0.2 2,-0.1 -1,-0.1 0.919 105.6 22.4 -88.0 -48.3 -21.7 25.4 -26.0 7 14 A P S S- 0 0 92 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 0.931 111.0 -92.5 -82.3 -82.8 -19.2 22.4 -25.7 8 15 A M - 0 0 150 -4,-0.2 -2,-0.1 3,-0.1 0, 0.0 -0.971 13.0-136.7-176.3-172.0 -20.3 20.2 -22.7 9 16 A D + 0 0 107 -2,-0.3 -4,-0.0 -4,-0.1 4,-0.0 0.018 44.2 139.5-159.3 38.2 -19.8 19.5 -19.0 10 17 A M S S- 0 0 148 1,-0.2 46,-0.1 2,-0.0 -2,-0.0 0.908 82.8 -12.5 -55.9 -39.9 -19.5 15.8 -18.4 11 18 A S - 0 0 27 44,-0.0 -1,-0.2 1,-0.0 3,-0.1 -0.985 68.0-104.3-156.8 164.4 -16.8 16.4 -15.9 12 19 A P - 0 0 34 0, 0.0 2,-3.2 0, 0.0 3,-0.3 0.575 44.2-157.0 -69.9 -7.2 -14.4 19.1 -14.6 13 20 A K S > S+ 0 0 127 1,-0.3 4,-3.2 43,-0.1 5,-0.3 -0.287 83.4 59.6 63.8 -70.3 -11.6 17.4 -16.5 14 21 A A H > S+ 0 0 58 -2,-3.2 4,-2.3 2,-0.2 -1,-0.3 0.978 112.9 36.6 -52.0 -60.3 -8.8 18.9 -14.3 15 22 A L H >> S+ 0 0 25 -3,-0.3 4,-2.8 1,-0.2 3,-0.7 0.989 119.6 47.8 -56.7 -61.4 -10.2 17.3 -11.1 16 23 A Q H 3> S+ 0 0 81 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.858 112.7 52.1 -49.6 -34.0 -11.3 14.0 -12.9 17 24 A Q H 3X S+ 0 0 84 -4,-3.2 4,-0.8 2,-0.2 -1,-0.3 0.889 110.8 46.2 -72.4 -36.6 -7.8 14.0 -14.4 18 25 A K H X S+ 0 0 109 -4,-1.0 4,-1.9 2,-0.2 3,-0.7 0.979 118.7 27.2 -52.1 -74.8 2.5 1.4 -8.5 29 36 A H H ><>S+ 0 0 42 -4,-1.3 5,-2.9 1,-0.2 3,-0.6 0.967 119.1 57.5 -54.9 -55.0 4.1 1.8 -5.0 30 37 A A H ><5S+ 0 0 1 -4,-2.6 3,-0.6 4,-0.3 -1,-0.2 0.841 110.1 47.7 -47.0 -30.6 1.5 -0.5 -3.3 31 38 A Q H <<5S+ 0 0 91 -4,-1.9 -1,-0.3 -3,-0.7 -2,-0.2 0.863 114.5 44.0 -80.1 -34.6 2.7 -3.1 -5.9 32 39 A N T <<5S- 0 0 107 -4,-1.9 -1,-0.2 -3,-0.6 -2,-0.2 0.099 119.6-108.4 -95.3 24.6 6.4 -2.4 -5.2 33 40 A L T < 5S+ 0 0 64 -3,-0.6 -3,-0.2 -4,-0.3 3,-0.2 0.830 90.5 119.4 55.1 30.5 5.7 -2.4 -1.4 34 41 A E >>< + 0 0 94 -5,-2.9 4,-1.3 -6,-0.2 3,-0.5 0.130 23.7 120.3-110.0 20.6 6.3 1.4 -1.5 35 42 A F H 3> + 0 0 2 -6,-0.6 4,-2.9 3,-0.2 5,-0.4 0.616 49.0 93.3 -61.3 -8.8 2.8 2.3 -0.2 36 43 A E H 34 S+ 0 0 126 -3,-0.2 4,-0.4 1,-0.2 -1,-0.2 0.973 108.1 11.9 -48.9 -68.4 4.4 4.1 2.7 37 44 A E H <4 S+ 0 0 99 -3,-0.5 4,-0.3 2,-0.1 -1,-0.2 0.706 133.1 58.0 -81.4 -19.2 4.4 7.5 1.0 38 45 A A H >< S+ 0 0 2 -4,-1.3 3,-2.7 1,-0.2 4,-0.4 0.952 94.7 58.6 -77.1 -51.5 2.1 6.2 -1.7 39 46 A A T >< S+ 0 0 14 -4,-2.9 3,-2.3 1,-0.3 4,-0.4 0.798 89.0 78.9 -51.4 -23.5 -0.9 5.0 0.4 40 47 A Q T >> S+ 0 0 125 -5,-0.4 3,-2.3 -4,-0.4 4,-0.7 0.876 77.5 70.9 -54.8 -32.4 -1.0 8.6 1.6 41 48 A I H X> S+ 0 0 10 -3,-2.7 4,-3.9 -4,-0.3 3,-0.7 0.842 78.1 79.6 -54.2 -28.4 -2.8 9.4 -1.7 42 49 A R H <> S+ 0 0 78 -3,-2.3 4,-1.7 -4,-0.4 -1,-0.3 0.861 90.8 52.4 -48.7 -34.0 -5.7 7.4 -0.2 43 50 A D H <> S+ 0 0 79 -3,-2.3 4,-1.7 -4,-0.4 -1,-0.3 0.898 115.2 39.2 -71.9 -37.5 -6.4 10.7 1.7 44 51 A Q H X S+ 0 0 188 -4,-0.7 3,-1.9 -5,-0.2 4,-0.6 0.995 102.8 41.2 -61.3 -62.0 -14.0 11.8 -4.8 50 57 A E H >X S+ 0 0 135 -4,-1.4 4,-1.2 1,-0.3 3,-1.0 0.895 111.3 59.0 -54.4 -37.9 -16.7 13.7 -2.9 51 58 A L H 3X S+ 0 0 72 -4,-1.5 4,-2.1 1,-0.2 -1,-0.3 0.756 85.0 82.6 -64.7 -19.9 -15.5 16.9 -4.6 52 59 A F H + 0 0 83 0, 0.0 3,-2.3 0, 0.0 -1,-0.1 0.926 67.6 55.3 -73.0 -46.7 20.4 -31.5 20.9 61 11 B D T 3 S+ 0 0 145 1,-0.3 4,-0.2 2,-0.2 -2,-0.1 0.761 114.0 44.2 -59.6 -20.0 20.3 -28.0 19.5 62 12 B N T 3 S+ 0 0 127 1,-0.1 -1,-0.3 2,-0.1 4,-0.1 0.227 96.9 77.9-108.3 14.8 23.2 -29.0 17.3 63 13 B V S < S+ 0 0 110 -3,-2.3 -2,-0.2 2,-0.1 -1,-0.1 0.920 105.7 22.4 -88.0 -48.2 21.8 -32.4 16.2 64 14 B P S S- 0 0 92 0, 0.0 2,-0.3 0, 0.0 -3,-0.1 0.930 111.0 -92.3 -82.3 -83.0 19.3 -31.2 13.6 65 15 B M - 0 0 146 -4,-0.2 -2,-0.1 3,-0.1 0, 0.0 -0.971 13.0-136.8-176.2-172.1 20.3 -27.8 12.3 66 16 B D + 0 0 102 -2,-0.3 -4,-0.0 -4,-0.1 4,-0.0 0.019 44.2 139.4-159.2 38.1 19.9 -24.0 12.7 67 17 B M S S- 0 0 147 1,-0.2 46,-0.1 2,-0.0 -2,-0.0 0.909 82.8 -12.5 -55.8 -39.9 19.5 -22.4 9.3 68 18 B S - 0 0 26 44,-0.0 -1,-0.2 1,-0.0 3,-0.1 -0.985 68.0-104.2-156.8 164.4 16.8 -20.1 10.7 69 19 B P - 0 0 35 0, 0.0 2,-3.2 0, 0.0 3,-0.3 0.574 44.1-157.0 -69.9 -7.1 14.5 -19.6 13.7 70 20 B K S > S+ 0 0 126 1,-0.3 4,-3.2 43,-0.1 5,-0.3 -0.287 83.5 59.5 63.7 -70.4 11.6 -21.0 11.6 71 21 B A H > S+ 0 0 58 -2,-3.2 4,-2.3 2,-0.2 -1,-0.3 0.977 113.0 36.6 -52.0 -60.3 9.0 -19.2 13.8 72 22 B L H >> S+ 0 0 26 -3,-0.3 4,-2.8 1,-0.2 3,-0.7 0.989 119.6 47.8 -56.7 -61.4 10.4 -15.7 13.1 73 23 B Q H 3> S+ 0 0 83 1,-0.3 4,-1.7 2,-0.2 -1,-0.2 0.858 112.7 52.2 -49.6 -34.0 11.3 -16.5 9.5 74 24 B Q H 3X S+ 0 0 82 -4,-3.2 4,-0.8 2,-0.2 -1,-0.3 0.889 110.8 46.2 -72.4 -36.5 7.8 -18.0 9.1 75 25 B K H X S+ 0 0 107 -4,-1.0 4,-1.9 2,-0.2 3,-0.7 0.978 118.6 27.2 -51.8 -75.0 -2.8 -8.6 -0.9 86 36 B H H ><>S+ 0 0 40 -4,-1.3 5,-2.9 1,-0.2 3,-0.6 0.966 119.1 57.5 -54.8 -54.9 -4.3 -5.4 0.4 87 37 B A H ><5S+ 0 0 1 -4,-2.6 3,-0.6 4,-0.3 -1,-0.2 0.842 110.0 47.7 -47.1 -30.9 -1.8 -3.1 -1.3 88 38 B Q H <<5S+ 0 0 94 -4,-2.0 -1,-0.3 -3,-0.7 -2,-0.2 0.864 114.5 44.0 -79.9 -34.6 -3.1 -4.8 -4.5 89 39 B N T <<5S- 0 0 109 -4,-1.9 -1,-0.2 -3,-0.6 -2,-0.2 0.096 119.7-108.4 -95.3 24.7 -6.7 -4.3 -3.5 90 40 B L T < 5S+ 0 0 68 -3,-0.6 -3,-0.2 -4,-0.3 3,-0.2 0.828 90.4 119.4 55.0 30.3 -6.0 -0.7 -2.4 91 41 B E >>< + 0 0 94 -5,-2.9 4,-1.3 -6,-0.2 3,-0.5 0.127 23.6 120.4-109.9 20.7 -6.5 -1.9 1.2 92 42 B F H 3> + 0 0 3 -6,-0.6 4,-2.9 3,-0.2 5,-0.4 0.616 49.0 93.3 -61.4 -8.6 -2.9 -1.0 2.3 93 43 B E H 34 S+ 0 0 130 -3,-0.2 4,-0.4 1,-0.2 -1,-0.2 0.973 108.1 11.9 -49.0 -68.4 -4.5 1.4 4.9 94 44 B E H <4 S+ 0 0 101 -3,-0.5 4,-0.3 2,-0.1 -1,-0.2 0.707 133.1 58.0 -81.5 -19.2 -4.4 -1.2 7.7 95 45 B A H >< S+ 0 0 2 -4,-1.3 3,-2.7 1,-0.2 4,-0.4 0.953 94.7 58.7 -76.9 -51.5 -2.2 -3.5 5.5 96 46 B A T >< S+ 0 0 13 -4,-2.9 3,-2.3 1,-0.3 4,-0.4 0.797 88.9 78.8 -51.0 -23.9 0.8 -1.1 5.0 97 47 B Q T >> S+ 0 0 129 -4,-0.4 3,-2.3 -5,-0.4 4,-0.7 0.875 77.5 70.9 -54.7 -32.6 1.0 -1.0 8.8 98 48 B I H X> S+ 0 0 8 -3,-2.7 4,-3.9 -4,-0.3 3,-0.7 0.842 78.1 79.6 -54.1 -28.4 2.8 -4.4 8.5 99 49 B R H <> S+ 0 0 76 -3,-2.3 4,-1.7 -4,-0.4 -1,-0.3 0.862 90.8 52.4 -48.7 -34.0 5.7 -2.4 7.0 100 50 B D H <> S+ 0 0 82 -3,-2.3 4,-1.7 -4,-0.4 -1,-0.3 0.897 115.2 39.2 -71.9 -37.4 6.5 -1.6 10.6 101 51 B Q H X S+ 0 0 185 -4,-0.7 3,-1.9 -5,-0.2 4,-0.6 0.995 102.8 41.2 -61.2 -62.1 14.0 -8.1 9.6 107 57 B E H >X S+ 0 0 133 -4,-1.4 4,-1.2 1,-0.3 3,-1.0 0.896 111.3 59.0 -54.3 -37.9 16.8 -6.9 11.8 108 58 B L H 3X S+ 0 0 68 -4,-1.5 4,-2.2 1,-0.2 -1,-0.3 0.757 85.0 82.7 -64.6 -19.9 15.7 -9.4 14.5 109 59 B F H