==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-DEC-06 2E5G . COMPND 2 MOLECULE: U6 SNRNA-SPECIFIC TERMINAL URIDYLYLTRANSFERASE 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7274.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 53.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 58 A G 0 0 108 0, 0.0 3,-0.2 0, 0.0 4,-0.1 0.000 360.0 360.0 360.0 -94.2 -14.1 18.5 11.8 2 59 A S - 0 0 103 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.027 360.0 -49.0 -64.6 174.4 -17.4 16.8 10.9 3 60 A S S S+ 0 0 131 1,-0.0 -1,-0.2 2,-0.0 0, 0.0 -0.191 120.2 39.2 -48.4 126.8 -17.8 14.3 8.1 4 61 A G + 0 0 49 1,-0.2 2,-0.3 -3,-0.2 -2,-0.1 0.807 65.1 153.8 93.4 93.6 -16.2 15.8 5.0 5 62 A S > - 0 0 58 3,-0.1 3,-0.5 -4,-0.1 2,-0.3 -0.853 31.6-142.8-156.0 114.6 -13.0 17.8 5.3 6 63 A S T 3 + 0 0 106 -2,-0.3 3,-0.1 1,-0.2 50,-0.0 -0.578 67.5 80.3 -79.7 136.9 -10.2 18.3 2.8 7 64 A G T 3 S+ 0 0 63 -2,-0.3 2,-0.6 0, 0.0 -1,-0.2 -0.035 78.8 58.8 163.1 -45.9 -6.6 18.3 4.0 8 65 A L < - 0 0 68 -3,-0.5 2,-0.2 1,-0.1 -3,-0.1 -0.907 48.4-179.9-116.8 105.1 -5.4 14.7 4.5 9 66 A R + 0 0 129 -2,-0.6 43,-1.6 43,-0.1 2,-0.3 -0.190 61.0 79.1 -94.0 41.4 -5.5 12.6 1.3 10 67 A S E -A 51 0A 16 -2,-0.2 2,-0.3 41,-0.2 41,-0.2 -0.921 59.1-153.4-142.3 166.6 -4.1 9.6 3.2 11 68 A V E -A 50 0A 2 39,-2.6 39,-1.9 -2,-0.3 2,-0.7 -0.993 18.6-124.2-144.7 149.9 -5.1 6.8 5.6 12 69 A F E -AB 49 77A 34 65,-2.1 65,-1.8 -2,-0.3 2,-0.5 -0.849 28.6-174.3 -99.3 115.7 -3.5 4.6 8.2 13 70 A V E +A 48 0A 0 35,-2.1 35,-2.0 -2,-0.7 2,-0.3 -0.929 18.3 137.9-113.4 130.5 -3.9 0.8 7.6 14 71 A S E +A 47 0A 26 -2,-0.5 61,-2.1 33,-0.2 33,-0.2 -0.950 32.8 74.9-157.2 173.5 -2.8 -1.8 10.1 15 72 A G + 0 0 55 31,-0.9 58,-0.2 -2,-0.3 32,-0.1 0.619 63.1 150.2 90.0 14.3 -3.8 -5.1 11.8 16 73 A F - 0 0 31 30,-0.4 -1,-0.3 1,-0.1 3,-0.1 -0.402 44.4-111.6 -79.5 156.8 -3.0 -7.1 8.7 17 74 A P > - 0 0 44 0, 0.0 3,-0.7 0, 0.0 2,-0.4 -0.069 45.3 -71.9 -77.1-178.2 -1.8 -10.8 8.9 18 75 A R T 3 S+ 0 0 251 1,-0.2 3,-0.1 3,-0.0 0, 0.0 -0.641 114.7 34.6 -81.6 130.0 1.6 -12.2 7.9 19 76 A G T 3 S+ 0 0 68 1,-0.4 -1,-0.2 -2,-0.4 -3,-0.0 -0.032 77.6 132.1 119.9 -30.5 2.3 -12.3 4.2 20 77 A V < - 0 0 26 -3,-0.7 -1,-0.4 4,-0.1 2,-0.2 -0.275 37.8-164.3 -57.0 136.3 0.5 -9.1 3.1 21 78 A D > - 0 0 76 -3,-0.1 4,-2.1 1,-0.1 5,-0.2 -0.689 31.8-109.0-119.0 172.9 2.7 -6.9 0.9 22 79 A S H > S+ 0 0 40 -2,-0.2 4,-2.4 2,-0.2 5,-0.2 0.934 116.8 51.1 -66.8 -47.6 2.6 -3.3 -0.3 23 80 A A H > S+ 0 0 55 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.937 112.4 46.5 -55.2 -51.1 1.7 -4.2 -3.9 24 81 A Q H > S+ 0 0 105 2,-0.2 4,-2.3 1,-0.2 5,-0.3 0.976 110.7 50.5 -56.0 -61.8 -1.2 -6.4 -2.8 25 82 A L H X S+ 0 0 0 -4,-2.1 4,-1.6 1,-0.2 3,-0.3 0.909 109.9 51.5 -42.0 -56.3 -2.7 -3.9 -0.3 26 83 A S H >< S+ 0 0 22 -4,-2.4 3,-1.0 1,-0.3 -1,-0.2 0.926 107.9 51.7 -48.6 -53.0 -2.7 -1.2 -2.9 27 84 A E H >< S+ 0 0 143 -4,-2.2 3,-1.4 1,-0.3 -1,-0.3 0.885 108.8 51.2 -52.7 -42.0 -4.5 -3.4 -5.4 28 85 A Y H >< S+ 0 0 55 -4,-2.3 3,-0.5 -3,-0.3 -1,-0.3 0.762 109.7 50.5 -67.9 -24.9 -7.1 -4.1 -2.7 29 86 A F G XX S+ 0 0 2 -4,-1.6 4,-0.9 -3,-1.0 3,-0.5 0.300 91.7 79.4 -94.6 7.8 -7.5 -0.4 -2.2 30 87 A L G <4 S+ 0 0 93 -3,-1.4 -1,-0.2 -4,-0.2 -2,-0.2 0.535 71.8 78.9 -90.3 -8.7 -7.9 0.2 -5.9 31 88 A A G <4 S+ 0 0 86 -3,-0.5 -1,-0.2 -4,-0.2 -2,-0.1 0.551 106.4 31.6 -75.2 -7.0 -11.5 -0.9 -5.8 32 89 A F T <4 S- 0 0 73 -3,-0.5 -2,-0.2 1,-0.4 -1,-0.2 0.664 130.9 -38.7-117.3 -35.8 -12.3 2.6 -4.4 33 90 A G S < S- 0 0 13 -4,-0.9 2,-0.5 25,-0.0 -1,-0.4 -0.984 75.8 -52.8-175.6 179.7 -9.7 4.8 -6.1 34 91 A P - 0 0 79 0, 0.0 19,-3.1 0, 0.0 2,-0.4 -0.612 48.9-149.9 -76.8 118.6 -6.1 5.3 -7.3 35 92 A V E -C 52 0A 24 -2,-0.5 17,-0.3 17,-0.2 3,-0.1 -0.764 7.8-156.9 -92.9 131.0 -3.6 4.6 -4.6 36 93 A A E - 0 0 52 15,-0.6 2,-0.3 -2,-0.4 -1,-0.2 0.964 63.6 -51.8 -68.1 -54.1 -0.3 6.4 -4.6 37 94 A S E - 0 0 68 14,-0.3 14,-2.6 12,-0.1 2,-0.5 -0.975 42.1-112.9-174.9 169.9 1.7 3.9 -2.6 38 95 A V E -C 50 0A 13 -2,-0.3 2,-1.4 12,-0.2 12,-0.2 -0.879 20.1-162.7-124.8 99.6 1.8 1.8 0.6 39 96 A V E +C 49 0A 90 10,-2.0 10,-2.5 -2,-0.5 2,-0.4 -0.643 20.5 176.2 -83.1 90.5 4.6 2.8 3.0 40 97 A M E -C 48 0A 48 -2,-1.4 8,-0.2 8,-0.3 -18,-0.1 -0.815 37.5-102.1-100.0 135.1 4.8 -0.3 5.3 41 98 A D - 0 0 46 6,-2.1 -1,-0.1 -2,-0.4 -2,-0.0 -0.241 31.9-173.1 -53.6 133.9 7.4 -0.6 8.0 42 99 A K S S+ 0 0 180 3,-0.1 -1,-0.1 2,-0.1 -2,-0.0 0.797 77.0 63.9 -98.4 -38.9 10.3 -2.8 7.0 43 100 A D S S- 0 0 125 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.914 136.8 -12.2 -51.4 -48.2 12.2 -3.0 10.3 44 101 A K S S- 0 0 177 3,-0.1 -1,-0.1 0, 0.0 -2,-0.1 0.690 84.9-135.9-119.9 -55.4 9.2 -4.7 11.9 45 102 A G + 0 0 32 2,-0.1 -3,-0.1 0, 0.0 3,-0.1 0.922 57.4 122.2 90.8 72.8 6.2 -4.5 9.7 46 103 A V + 0 0 85 1,-0.4 -31,-0.9 -32,-0.0 -30,-0.4 0.622 67.3 35.5-126.8 -46.5 3.1 -3.6 11.7 47 104 A F E -A 14 0A 76 -33,-0.2 -6,-2.1 -32,-0.1 -1,-0.4 -0.792 59.2-164.9-114.5 157.8 1.6 -0.4 10.3 48 105 A A E -AC 13 40A 0 -35,-2.0 -35,-2.1 -2,-0.3 2,-1.0 -0.949 18.5-136.3-146.9 122.4 1.4 0.9 6.7 49 106 A I E -AC 12 39A 42 -10,-2.5 -10,-2.0 -2,-0.3 2,-0.7 -0.666 21.9-156.3 -80.9 103.1 0.6 4.4 5.5 50 107 A V E -AC 11 38A 0 -39,-1.9 -39,-2.6 -2,-1.0 2,-0.2 -0.715 10.8-161.4 -84.6 112.7 -1.8 4.0 2.6 51 108 A E E -A 10 0A 83 -14,-2.6 -15,-0.6 -2,-0.7 -14,-0.3 -0.591 0.7-153.8 -93.0 155.6 -1.7 7.0 0.3 52 109 A M E - C 0 35A 10 -43,-1.6 -17,-0.2 -17,-0.3 -43,-0.1 -0.924 17.9-129.5-128.9 153.8 -4.3 8.1 -2.2 53 110 A G S S+ 0 0 30 -19,-3.1 2,-0.2 -2,-0.3 -1,-0.2 0.999 88.3 13.5 -62.6 -73.6 -4.3 10.0 -5.5 54 111 A D S > S- 0 0 107 -20,-0.2 4,-1.3 1,-0.1 3,-0.5 -0.689 79.2-111.6-105.5 159.5 -7.0 12.6 -4.9 55 112 A V H > S+ 0 0 42 -2,-0.2 4,-1.8 1,-0.2 5,-0.2 0.897 115.8 60.7 -53.5 -43.9 -8.9 13.6 -1.8 56 113 A G H > S+ 0 0 43 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.905 99.1 56.2 -51.1 -47.2 -12.1 12.0 -3.1 57 114 A A H > S+ 0 0 11 -3,-0.5 4,-1.0 1,-0.3 3,-0.4 0.941 107.6 46.7 -50.9 -55.1 -10.4 8.6 -3.3 58 115 A R H X S+ 0 0 23 -4,-1.3 4,-1.2 1,-0.2 3,-0.3 0.817 112.2 53.1 -58.2 -31.2 -9.5 8.7 0.4 59 116 A E H X S+ 0 0 55 -4,-1.8 4,-1.8 -3,-0.2 -1,-0.2 0.842 98.3 62.8 -73.3 -34.5 -13.0 9.8 1.1 60 117 A A H < S+ 0 0 41 -4,-2.3 -1,-0.2 -3,-0.4 -2,-0.2 0.781 104.2 50.2 -61.0 -27.0 -14.5 6.9 -0.8 61 118 A V H >< S+ 0 0 2 -4,-1.0 3,-1.0 -3,-0.3 -1,-0.2 0.888 105.5 53.6 -78.5 -42.0 -12.9 4.6 1.7 62 119 A L H 3< S+ 0 0 72 -4,-1.2 2,-0.3 1,-0.3 -2,-0.2 0.837 103.1 59.7 -61.8 -33.3 -14.2 6.4 4.8 63 120 A S T 3< S+ 0 0 113 -4,-1.8 2,-0.4 0, 0.0 -1,-0.3 -0.144 85.6 117.4 -88.7 39.6 -17.7 6.0 3.4 64 121 A Q < - 0 0 58 -3,-1.0 3,-0.1 -2,-0.3 -3,-0.1 -0.856 61.1-142.7-110.9 144.4 -17.4 2.2 3.4 65 122 A S S S- 0 0 100 -2,-0.4 2,-0.4 1,-0.3 -1,-0.2 1.000 78.8 -10.6 -64.5 -72.7 -19.5 -0.2 5.3 66 123 A Q - 0 0 140 2,-0.0 2,-0.3 7,-0.0 -1,-0.3 -0.987 62.7-146.7-135.0 144.0 -16.9 -2.9 6.3 67 124 A H + 0 0 30 -2,-0.4 7,-0.6 7,-0.2 2,-0.3 -0.821 22.4 162.2-110.4 149.7 -13.4 -3.5 5.1 68 125 A S E -D 73 0B 59 -2,-0.3 2,-0.5 5,-0.2 5,-0.2 -0.965 31.8-146.2-164.0 146.6 -11.6 -6.9 4.8 69 126 A L E > S-D 72 0B 30 3,-1.6 3,-0.6 -2,-0.3 4,-0.1 -0.650 86.7 -39.4-118.3 73.9 -8.5 -8.3 3.1 70 127 A G T 3 S- 0 0 74 -2,-0.5 2,-0.4 1,-0.2 3,-0.1 0.908 122.6 -40.0 76.5 43.7 -9.5 -11.9 2.1 71 128 A G T 3 S+ 0 0 72 1,-0.4 -1,-0.2 0, 0.0 0, 0.0 -0.350 116.6 104.4 102.8 -52.6 -11.5 -12.7 5.2 72 129 A H E < S-D 69 0B 101 -3,-0.6 -3,-1.6 -2,-0.4 -1,-0.4 -0.160 73.0-114.9 -60.8 158.0 -9.2 -11.1 7.7 73 130 A R E -D 68 0B 197 -5,-0.2 2,-0.4 -58,-0.2 -5,-0.2 -0.784 23.3-154.7-100.5 141.5 -10.2 -7.8 9.3 74 131 A L - 0 0 10 -7,-0.6 2,-1.8 -2,-0.4 -7,-0.2 -0.949 17.0-137.1-118.7 134.5 -8.3 -4.5 8.7 75 132 A R - 0 0 188 -61,-2.1 2,-0.2 -2,-0.4 -61,-0.2 -0.414 34.6-178.0 -85.0 61.7 -8.3 -1.5 11.1 76 133 A V + 0 0 32 -2,-1.8 -63,-0.2 -63,-0.2 -9,-0.1 -0.450 6.9 170.5 -65.6 125.6 -8.7 1.0 8.3 77 134 A R B -B 12 0A 78 -65,-1.8 -65,-2.1 -2,-0.2 2,-1.9 -0.967 47.3-110.3-138.7 153.9 -8.6 4.6 9.7 78 135 A P - 0 0 32 0, 0.0 -67,-0.1 0, 0.0 3,-0.1 -0.195 65.1 -96.7 -76.6 47.6 -8.4 8.1 8.3 79 136 A R S S+ 0 0 104 -2,-1.9 2,-0.9 1,-0.2 -66,-0.1 0.864 71.3 161.3 37.0 51.0 -4.9 8.5 9.7 80 137 A E + 0 0 109 -68,-0.1 2,-0.2 3,-0.0 3,-0.2 -0.742 13.9 137.1-103.7 85.3 -6.4 10.3 12.7 81 138 A Q + 0 0 130 -2,-0.9 3,-0.2 1,-0.2 0, 0.0 -0.742 53.9 23.2-123.0 171.5 -3.8 10.1 15.4 82 139 A K S S- 0 0 184 -2,-0.2 2,-0.6 1,-0.2 -1,-0.2 0.865 77.7-175.9 38.1 50.1 -2.3 12.5 18.1 83 140 A E - 0 0 132 -3,-0.2 2,-0.4 1,-0.0 -1,-0.2 -0.670 19.5-136.4 -80.9 117.9 -5.6 14.5 17.9 84 141 A F - 0 0 195 -2,-0.6 2,-0.4 -3,-0.2 -1,-0.0 -0.600 20.9-162.2 -77.2 127.0 -5.4 17.6 20.1 85 142 A Q + 0 0 185 -2,-0.4 -1,-0.0 2,-0.0 -2,-0.0 -0.880 20.7 145.5-113.1 143.4 -8.6 18.2 22.1 86 143 A S - 0 0 90 -2,-0.4 2,-1.5 2,-0.0 -2,-0.0 -0.962 54.7 -93.7-170.3 153.4 -9.6 21.4 23.8 87 144 A P - 0 0 122 0, 0.0 2,-1.3 0, 0.0 -2,-0.0 -0.566 40.0-170.1 -77.0 87.5 -12.7 23.5 24.7 88 145 A A + 0 0 101 -2,-1.5 2,-0.4 2,-0.0 -2,-0.0 -0.652 17.2 165.3 -83.3 92.2 -12.9 25.9 21.7 89 146 A S + 0 0 109 -2,-1.3 2,-0.3 2,-0.0 0, 0.0 -0.925 7.2 131.5-113.9 133.1 -15.5 28.4 22.8 90 147 A K - 0 0 202 -2,-0.4 -2,-0.0 2,-0.0 0, 0.0 -0.900 29.1-158.2-175.0 145.3 -16.1 31.8 21.1 91 148 A S - 0 0 98 -2,-0.3 2,-0.1 0, 0.0 -2,-0.0 -0.986 22.7-117.0-135.5 144.2 -18.9 33.9 19.8 92 149 A P - 0 0 114 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.418 27.2-124.2 -77.3 152.1 -19.1 36.8 17.2 93 150 A K 0 0 182 -2,-0.1 0, 0.0 1,-0.1 0, 0.0 -0.787 360.0 360.0-100.0 140.4 -20.2 40.3 18.1 94 151 A G 0 0 116 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 -0.005 360.0 360.0 -44.1 360.0 -23.0 42.1 16.4