==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION, CELL CYCLE 28-DEC-06 2E6O . COMPND 2 MOLECULE: HMG BOX-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8014.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 64.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 46.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 53 0, 0.0 2,-0.3 0, 0.0 85,-0.1 0.000 360.0 360.0 360.0 143.9 -0.9 -21.5 10.9 2 2 A S + 0 0 95 81,-0.1 2,-0.3 84,-0.1 3,-0.1 -0.821 360.0 161.6-118.4 158.2 -0.1 -18.5 13.0 3 3 A S + 0 0 39 -2,-0.3 84,-0.1 84,-0.2 83,-0.1 -0.887 34.3 85.3-173.5 140.6 3.1 -17.4 14.8 4 4 A G + 0 0 68 -2,-0.3 -1,-0.1 82,-0.2 3,-0.1 0.619 47.0 177.3 129.4 42.6 4.6 -14.2 16.4 5 5 A S - 0 0 121 1,-0.1 -2,-0.0 -3,-0.1 0, 0.0 0.149 49.4 -46.4 -59.5-175.5 3.4 -13.9 20.0 6 6 A S - 0 0 115 1,-0.1 -1,-0.1 2,-0.0 2,-0.1 -0.074 64.9-123.4 -52.9 155.7 4.5 -11.1 22.3 7 7 A G - 0 0 59 3,-0.1 2,-0.4 -3,-0.1 -1,-0.1 -0.275 12.4-117.8 -95.1-176.2 8.2 -10.4 22.4 8 8 A G S S- 0 0 57 -2,-0.1 -2,-0.0 1,-0.1 0, 0.0 -0.883 81.2 -32.5-131.6 103.4 10.7 -10.3 25.2 9 9 A T S S+ 0 0 162 -2,-0.4 2,-0.4 1,-0.2 -1,-0.1 0.867 90.2 161.3 58.2 38.0 12.5 -7.1 26.1 10 10 A V - 0 0 114 1,-0.0 -1,-0.2 3,-0.0 2,-0.1 -0.770 21.5-160.6 -94.9 133.9 12.4 -6.1 22.5 11 11 A S - 0 0 93 -2,-0.4 2,-0.8 1,-0.1 -1,-0.0 -0.372 35.2 -76.5-101.6-177.4 12.9 -2.4 21.5 12 12 A A + 0 0 103 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 -0.737 60.2 145.0 -86.7 110.5 12.1 -0.4 18.4 13 13 A T - 0 0 109 -2,-0.8 -1,-0.2 0, 0.0 -3,-0.0 0.619 46.7-139.7-115.0 -25.6 14.6 -1.2 15.6 14 14 A S - 0 0 103 2,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.998 26.4-159.7 59.2 72.4 12.3 -1.0 12.5 15 15 A P - 0 0 83 0, 0.0 2,-0.3 0, 0.0 3,-0.1 0.062 6.9-120.5 -69.8-174.8 13.7 -4.0 10.5 16 16 A N S S+ 0 0 141 1,-0.1 3,-0.1 3,-0.0 -2,-0.0 -0.921 81.8 19.6-132.3 157.7 13.3 -4.6 6.8 17 17 A K S S+ 0 0 207 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 0.782 85.3 170.4 56.2 27.3 11.8 -7.3 4.6 18 18 A C - 0 0 72 -3,-0.1 -1,-0.1 1,-0.1 0, 0.0 0.071 41.0-123.5 -58.9 177.3 9.8 -8.4 7.7 19 19 A K + 0 0 181 -3,-0.1 -1,-0.1 2,-0.0 -2,-0.0 -0.309 61.4 130.3-122.5 47.9 7.0 -10.9 7.5 20 20 A R - 0 0 192 1,-0.1 -3,-0.0 3,-0.0 0, 0.0 -0.625 57.8-100.9-101.0 160.6 4.1 -8.9 8.9 21 21 A P - 0 0 51 0, 0.0 2,-0.9 0, 0.0 -1,-0.1 -0.058 37.4 -99.8 -69.8 175.8 0.6 -8.4 7.5 22 22 A M - 0 0 51 49,-0.2 53,-0.2 50,-0.1 52,-0.2 -0.785 43.2-166.0-104.6 90.4 -0.6 -5.3 5.7 23 23 A N > - 0 0 90 -2,-0.9 4,-2.0 51,-0.1 5,-0.2 -0.049 37.6 -93.5 -65.7 173.8 -2.6 -3.2 8.2 24 24 A A H >> S+ 0 0 21 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.967 127.1 44.3 -53.6 -60.5 -4.8 -0.3 7.2 25 25 A F H >> S+ 0 0 86 1,-0.2 4,-3.1 2,-0.2 3,-0.5 0.895 108.5 59.9 -52.4 -43.9 -2.2 2.4 7.5 26 26 A M H 3> S+ 0 0 82 1,-0.3 4,-1.6 2,-0.2 -1,-0.2 0.903 104.4 49.1 -51.8 -45.6 0.3 0.1 5.8 27 27 A L H X S+ 0 0 131 -4,-1.6 3,-2.2 -5,-0.4 4,-0.6 0.945 113.2 46.1 -83.8 -57.8 2.2 2.3 0.6 31 31 A K H 3< S+ 0 0 112 -4,-2.3 4,-0.2 1,-0.3 -2,-0.2 0.773 124.3 38.5 -56.5 -25.9 -0.5 3.1 -1.9 32 32 A Y T 3X S+ 0 0 77 -4,-2.6 4,-1.1 -5,-0.1 -1,-0.3 0.254 93.3 96.8-107.7 9.1 0.4 6.7 -1.3 33 33 A R H X> S+ 0 0 131 -3,-2.2 3,-1.5 2,-0.2 4,-1.4 0.997 92.3 30.6 -60.2 -73.2 4.1 6.1 -1.1 34 34 A V H 3X S+ 0 0 69 -4,-0.6 4,-1.8 1,-0.3 5,-0.4 0.802 109.0 74.4 -57.2 -29.6 5.2 6.8 -4.6 35 35 A E H 3> S+ 0 0 96 1,-0.3 4,-0.6 -5,-0.3 -1,-0.3 0.862 109.1 29.7 -51.8 -38.8 2.4 9.4 -4.8 36 36 A Y H < + 0 0 91 -4,-2.7 3,-0.6 1,-0.1 -1,-0.2 -0.580 67.0 150.8-128.6 69.5 8.0 15.8 -3.0 41 41 A P T 3 S+ 0 0 104 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.764 73.7 60.3 -69.7 -26.2 11.3 14.9 -4.6 42 42 A G T 3 S+ 0 0 80 -3,-0.1 2,-0.1 2,-0.1 -2,-0.1 0.726 96.8 75.0 -74.6 -21.6 13.1 17.5 -2.5 43 43 A K S < S- 0 0 106 -3,-0.6 2,-0.2 1,-0.1 -3,-0.0 -0.357 82.3-116.4 -86.3 169.5 12.0 15.8 0.7 44 44 A D >> - 0 0 100 -2,-0.1 4,-2.2 1,-0.1 3,-1.5 -0.640 26.5-105.8-104.8 163.7 13.5 12.6 2.2 45 45 A N H 3> S+ 0 0 116 1,-0.3 4,-1.8 2,-0.2 5,-0.2 0.904 120.6 59.9 -52.1 -45.7 11.8 9.2 2.8 46 46 A R H 3> S+ 0 0 208 1,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.794 109.8 44.5 -54.2 -28.8 11.7 10.0 6.5 47 47 A A H <> S+ 0 0 21 -3,-1.5 4,-2.6 2,-0.2 5,-0.3 0.877 103.7 60.9 -83.1 -42.1 9.6 13.0 5.6 48 48 A I H X S+ 0 0 9 -4,-2.2 4,-1.5 1,-0.2 -2,-0.2 0.844 108.6 46.5 -53.4 -35.7 7.3 11.2 3.1 49 49 A S H X S+ 0 0 54 -4,-1.8 4,-2.3 2,-0.2 5,-0.2 0.948 109.0 51.9 -72.8 -51.0 6.2 9.0 6.0 50 50 A V H X S+ 0 0 109 -4,-1.2 4,-1.4 1,-0.2 -2,-0.2 0.896 112.8 46.7 -52.3 -44.5 5.7 11.7 8.6 51 51 A I H X S+ 0 0 35 -4,-2.6 4,-1.4 2,-0.2 -1,-0.2 0.892 107.6 57.5 -66.2 -40.8 3.5 13.6 6.1 52 52 A L H >X S+ 0 0 5 -4,-1.5 4,-1.5 -5,-0.3 3,-0.7 0.949 104.0 51.1 -55.0 -53.9 1.5 10.4 5.2 53 53 A G H 3X S+ 0 0 15 -4,-2.3 4,-1.6 1,-0.3 3,-0.3 0.882 102.4 61.3 -52.2 -42.4 0.5 9.8 8.8 54 54 A D H 3X S+ 0 0 76 -4,-1.4 4,-1.7 1,-0.3 3,-0.4 0.897 103.0 50.4 -51.9 -44.4 -0.8 13.4 9.0 55 55 A R H - 0 0 145 1,-0.0 4,-0.7 0, 0.0 -1,-0.1 -0.262 29.1 -96.8 -97.8-172.6 -12.4 10.9 8.1 61 61 A N H > S+ 0 0 132 2,-0.2 4,-0.8 1,-0.2 -2,-0.1 0.845 125.8 40.5 -75.0 -35.2 -13.8 7.6 9.4 62 62 A E H > S+ 0 0 146 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.791 106.5 63.6 -82.4 -30.4 -15.1 6.6 5.9 63 63 A E H 4 S+ 0 0 97 1,-0.2 -1,-0.2 2,-0.2 -2,-0.2 0.767 110.5 40.0 -64.5 -25.3 -11.9 7.9 4.2 64 64 A R H >X S+ 0 0 60 -4,-0.7 4,-2.5 2,-0.1 3,-2.0 0.690 96.5 79.0 -95.0 -23.7 -9.9 5.3 6.1 65 65 A R H 3X>S+ 0 0 145 -4,-0.8 4,-2.0 1,-0.3 5,-0.7 0.863 82.2 67.5 -51.8 -38.9 -12.5 2.5 5.7 66 66 A M H 3<5S+ 0 0 94 -4,-1.0 4,-0.5 1,-0.2 -1,-0.3 0.819 113.2 31.2 -51.9 -32.4 -11.3 2.0 2.2 67 67 A Y H <>5S+ 0 0 5 -3,-2.0 4,-2.9 3,-0.2 5,-0.3 0.762 114.8 61.3 -96.0 -32.5 -8.0 0.8 3.8 68 68 A T H X5S+ 0 0 56 -4,-2.5 4,-1.9 2,-0.2 -2,-0.2 0.985 115.4 29.7 -57.7 -64.4 -9.6 -0.7 7.0 69 69 A L H X5S+ 0 0 95 -4,-2.0 4,-2.0 2,-0.2 5,-0.2 0.935 121.8 53.2 -62.5 -48.1 -11.8 -3.3 5.3 70 70 A E H >X S+ 0 0 112 -4,-1.9 4,-1.6 -5,-0.3 3,-0.5 0.949 100.0 50.8 -52.6 -55.5 -8.6 -6.8 6.7 73 73 A A H 3X S+ 0 0 52 -4,-2.0 4,-2.8 1,-0.3 -1,-0.2 0.855 112.7 48.0 -51.8 -37.8 -9.2 -9.1 3.8 74 74 A L H 3X S+ 0 0 46 -4,-1.3 4,-1.9 1,-0.2 -1,-0.3 0.807 106.3 57.2 -73.9 -30.4 -5.4 -9.2 3.3 75 75 A A H << S+ 0 0 36 -4,-2.1 -2,-0.2 -3,-0.5 -1,-0.2 0.762 117.1 34.6 -71.1 -25.5 -4.8 -9.8 7.0 76 76 A E H >X S+ 0 0 123 -4,-1.6 4,-1.0 -5,-0.2 3,-0.6 0.838 117.2 50.7 -95.0 -43.0 -6.9 -12.9 6.8 77 77 A E H >X S+ 0 0 116 -4,-2.8 4,-2.2 -5,-0.3 3,-0.9 0.917 103.0 60.3 -61.6 -45.1 -6.0 -14.1 3.3 78 78 A Q H 3X S+ 0 0 70 -4,-1.9 4,-1.1 1,-0.3 -1,-0.2 0.806 103.2 53.8 -53.1 -30.5 -2.3 -13.9 4.0 79 79 A K H <4 S+ 0 0 109 -3,-0.6 -1,-0.3 2,-0.2 -2,-0.2 0.832 107.1 49.9 -74.0 -33.3 -2.9 -16.4 6.8 80 80 A R H << S+ 0 0 209 -4,-1.0 -2,-0.2 -3,-0.9 -1,-0.2 0.867 110.1 49.6 -72.8 -37.7 -4.6 -18.8 4.4 81 81 A L H < S+ 0 0 130 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.771 113.5 49.2 -71.9 -26.2 -1.8 -18.6 1.9 82 82 A N < + 0 0 75 -4,-1.1 -1,-0.3 -5,-0.3 3,-0.1 -0.621 61.8 152.4-115.5 71.3 0.8 -19.2 4.6 83 83 A P + 0 0 79 0, 0.0 2,-1.1 0, 0.0 -1,-0.2 0.742 65.7 68.7 -69.8 -24.0 -0.6 -22.3 6.5 84 84 A D + 0 0 125 -3,-0.2 2,-0.6 -83,-0.1 -82,-0.0 -0.634 64.9 143.9 -98.8 75.4 2.9 -23.2 7.5 85 85 A C + 0 0 43 -2,-1.1 -81,-0.1 1,-0.1 -83,-0.0 -0.916 2.6 140.0-119.3 106.0 3.7 -20.4 10.0 86 86 A W 0 0 249 -2,-0.6 -82,-0.2 -85,-0.1 -1,-0.1 0.688 360.0 360.0-111.5 -32.9 5.8 -21.4 13.0 87 87 A K 0 0 190 -84,-0.1 -84,-0.2 -83,-0.1 -1,-0.1 -0.133 360.0 360.0 -58.9 360.0 8.2 -18.4 13.3