==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-DEC-06 2E6R . COMPND 2 MOLECULE: JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1D; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.KADIRVEL,F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, . 92 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9171.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 22 23.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-141.6 -8.3 24.4 39.6 2 2 A S - 0 0 129 1,-0.1 0, 0.0 2,-0.0 0, 0.0 -0.800 360.0-178.5-126.4 168.5 -10.6 23.9 36.7 3 3 A S - 0 0 113 -2,-0.3 -1,-0.1 0, 0.0 3,-0.0 0.556 42.1-119.8-133.4 -42.2 -11.4 25.7 33.4 4 4 A G S S+ 0 0 50 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 0.501 78.4 24.2 96.9 120.1 -14.1 23.8 31.6 5 5 A S S S+ 0 0 131 1,-0.1 2,-0.2 0, 0.0 0, 0.0 0.963 76.3 170.6 59.1 90.8 -13.9 22.2 28.2 6 6 A S + 0 0 107 1,-0.0 -1,-0.1 3,-0.0 0, 0.0 -0.555 28.0 92.3-119.5-175.2 -10.3 21.5 27.5 7 7 A G + 0 0 76 -2,-0.2 3,-0.1 2,-0.0 -1,-0.0 0.896 44.6 114.6 89.7 83.0 -8.2 19.7 24.9 8 8 A H + 0 0 189 1,-0.1 2,-0.1 0, 0.0 -1,-0.0 0.055 48.4 88.4-170.5 38.6 -7.1 21.9 22.0 9 9 A S + 0 0 125 2,-0.0 2,-0.4 0, 0.0 -1,-0.1 -0.585 42.9 129.7-146.9 78.3 -3.3 22.2 22.1 10 10 A S + 0 0 123 -2,-0.1 2,-0.4 -3,-0.1 0, 0.0 -0.887 22.3 166.2-138.1 105.2 -1.5 19.4 20.2 11 11 A A + 0 0 95 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.928 1.4 164.5-121.2 144.4 1.2 20.2 17.6 12 12 A Q - 0 0 173 -2,-0.4 2,-0.4 2,-0.0 -2,-0.0 -0.970 16.3-161.0-158.6 140.9 3.8 18.0 16.0 13 13 A F + 0 0 201 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.990 8.3 177.8-129.8 130.0 6.1 18.1 13.0 14 14 A I + 0 0 140 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.889 13.6 157.8-135.3 104.2 7.8 15.2 11.2 15 15 A D + 0 0 129 -2,-0.4 2,-0.3 2,-0.0 -1,-0.1 -0.333 50.2 90.6-119.3 49.1 9.9 15.8 8.1 16 16 A S - 0 0 83 2,-0.0 2,-0.5 0, 0.0 9,-0.0 -0.932 61.3-138.1-140.0 162.6 12.1 12.7 8.2 17 17 A Y - 0 0 103 -2,-0.3 2,-0.5 8,-0.1 11,-0.1 -0.953 19.9-179.6-129.2 113.3 12.0 9.2 6.7 18 18 A I - 0 0 80 -2,-0.5 22,-0.4 5,-0.1 7,-0.2 -0.946 31.7-112.4-116.1 129.2 13.0 6.2 8.8 19 19 A C - 0 0 4 5,-1.3 22,-0.2 -2,-0.5 9,-0.0 -0.079 14.0-142.0 -52.1 154.3 13.0 2.6 7.5 20 20 A Q S S+ 0 0 111 20,-1.4 -1,-0.1 3,-0.1 21,-0.1 0.065 95.6 42.6-108.1 22.2 10.4 0.2 9.0 21 21 A V S S+ 0 0 79 19,-0.1 -1,-0.1 3,-0.0 20,-0.1 0.578 132.5 11.4-131.2 -42.9 12.8 -2.8 9.0 22 22 A C S S- 0 0 55 2,-0.1 -2,-0.1 0, 0.0 19,-0.0 0.540 91.9-128.7-115.3 -16.9 16.2 -1.6 10.2 23 23 A S + 0 0 85 1,-0.1 2,-0.2 2,-0.0 -3,-0.1 0.991 55.5 142.9 63.8 63.4 15.2 1.9 11.5 24 24 A R - 0 0 166 1,-0.1 -5,-1.3 2,-0.0 -1,-0.1 -0.659 38.9-170.5-123.8-179.9 17.8 3.9 9.7 25 25 A G S > S+ 0 0 26 -2,-0.2 3,-2.6 -7,-0.2 4,-0.2 0.521 78.2 68.5-140.4 -40.4 18.1 7.3 7.9 26 26 A D G > S+ 0 0 152 1,-0.3 3,-0.7 2,-0.1 -8,-0.0 0.741 97.6 61.2 -59.2 -22.5 21.4 7.6 6.1 27 27 A E G > S+ 0 0 76 1,-0.2 3,-3.0 2,-0.1 -1,-0.3 0.442 70.2 105.1 -83.7 -0.2 20.0 4.9 3.8 28 28 A D G X + 0 0 74 -3,-2.6 3,-2.6 1,-0.3 -1,-0.2 0.781 60.7 79.7 -50.0 -27.9 17.2 7.3 2.8 29 29 A D G < S+ 0 0 143 -3,-0.7 -1,-0.3 1,-0.3 -2,-0.1 0.789 107.0 28.6 -51.5 -28.6 19.1 7.7 -0.4 30 30 A K G < S+ 0 0 90 -3,-3.0 2,-0.3 22,-0.1 -1,-0.3 -0.082 93.4 134.3-123.9 32.0 17.5 4.4 -1.5 31 31 A L < - 0 0 5 -3,-2.6 2,-0.2 11,-0.1 11,-0.2 -0.647 43.9-142.7 -86.5 139.6 14.3 4.6 0.6 32 32 A L E -A 41 0A 2 9,-2.5 9,-1.3 -2,-0.3 2,-0.5 -0.676 5.5-138.5-100.7 155.8 11.0 3.7 -1.0 33 33 A F E -A 40 0A 112 -2,-0.2 25,-0.5 7,-0.2 2,-0.3 -0.957 12.6-135.9-118.6 129.3 7.6 5.4 -0.5 34 34 A C > - 0 0 6 5,-0.8 4,-1.0 -2,-0.5 2,-0.6 -0.614 8.0-140.5 -83.4 138.9 4.3 3.5 -0.1 35 35 A D T 4 S+ 0 0 103 23,-0.8 24,-0.1 -2,-0.3 -1,-0.1 -0.242 97.4 36.9 -91.3 45.7 1.3 4.8 -2.0 36 36 A G T 4 S+ 0 0 62 -2,-0.6 -1,-0.2 3,-0.0 23,-0.1 0.358 130.9 16.5-158.5 -39.1 -1.1 4.0 0.9 37 37 A C T 4 S- 0 0 48 2,-0.0 -2,-0.1 0, 0.0 22,-0.0 0.359 90.0-127.3-125.4 -2.5 0.6 4.6 4.3 38 38 A D < + 0 0 115 -4,-1.0 2,-0.1 1,-0.1 -3,-0.1 0.951 53.5 157.7 51.6 57.1 3.5 6.8 3.1 39 39 A D - 0 0 42 -22,-0.1 -5,-0.8 2,-0.0 2,-0.5 -0.415 41.5-114.0-102.5-179.7 6.1 4.6 4.8 40 40 A N E +A 33 0A 19 -22,-0.4 -20,-1.4 -7,-0.2 2,-0.4 -0.972 35.7 165.0-123.5 122.3 9.8 4.1 4.3 41 41 A Y E -A 32 0A 11 -9,-1.3 -9,-2.5 -2,-0.5 -22,-0.0 -0.997 24.3-138.9-139.3 132.8 11.3 0.8 3.1 42 42 A H - 0 0 0 -2,-0.4 4,-0.4 -11,-0.2 -11,-0.1 -0.123 22.9-118.3 -78.1 179.7 14.8 0.0 1.7 43 43 A I S S+ 0 0 14 -13,-0.3 7,-2.3 1,-0.2 -1,-0.1 0.622 114.0 44.6 -94.4 -17.0 15.6 -2.3 -1.2 44 44 A F S S+ 0 0 106 5,-0.2 -1,-0.2 1,-0.1 -2,-0.0 0.180 107.3 60.5-110.2 14.0 17.6 -4.7 0.9 45 45 A C S S+ 0 0 25 -3,-0.1 -2,-0.1 3,-0.1 -1,-0.1 0.624 88.7 80.8-111.1 -24.2 15.2 -4.8 3.8 46 46 A L S S- 0 0 19 -4,-0.4 -3,-0.1 4,-0.1 14,-0.0 0.118 84.1-102.0 -69.6-169.4 12.1 -6.2 2.0 47 47 A L S S+ 0 0 164 1,-0.9 -3,-0.0 2,-0.1 3,-0.0 -0.644 117.1 22.0-170.4 105.6 11.5 -9.8 1.2 48 48 A P S S- 0 0 113 0, 0.0 -1,-0.9 0, 0.0 -3,-0.1 0.473 110.0-139.6 -69.8 148.4 12.0 -10.6 -1.5 49 49 A P - 0 0 78 0, 0.0 -5,-0.2 0, 0.0 -6,-0.1 -0.135 11.6-120.4 -69.7 169.4 14.3 -7.5 -1.7 50 50 A L - 0 0 64 -7,-2.3 3,-0.1 1,-0.1 -4,-0.1 -0.766 10.1-126.7-113.6 159.5 14.5 -5.2 -4.7 51 51 A P S S- 0 0 110 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.878 80.5 -42.2 -69.7 -39.7 17.4 -4.3 -7.0 52 52 A E S S- 0 0 122 -10,-0.1 -22,-0.1 -9,-0.1 -10,-0.0 -0.968 90.1 -30.6-173.2-179.1 16.9 -0.5 -6.5 53 53 A I - 0 0 65 -2,-0.3 -22,-0.1 -3,-0.1 -21,-0.1 -0.207 67.0-121.8 -51.5 131.4 14.4 2.3 -6.3 54 54 A P - 0 0 43 0, 0.0 4,-0.1 0, 0.0 -1,-0.1 -0.103 9.2-137.6 -69.7 172.1 11.3 1.6 -8.4 55 55 A R S S+ 0 0 249 2,-0.1 3,-0.1 0, 0.0 -2,-0.0 0.879 78.7 26.6 -95.6 -74.5 10.0 3.8 -11.3 56 56 A G S S- 0 0 65 1,-0.2 2,-0.4 0, 0.0 0, 0.0 0.467 117.9 -32.0 -67.0-144.8 6.2 4.0 -11.1 57 57 A I - 0 0 136 -22,-0.0 2,-0.4 -23,-0.0 -1,-0.2 -0.639 61.9-162.9 -81.8 131.0 4.2 3.7 -7.9 58 58 A W - 0 0 33 -25,-0.5 -23,-0.8 -2,-0.4 2,-0.3 -0.925 2.2-162.5-117.5 139.8 5.6 1.3 -5.3 59 59 A R - 0 0 101 -2,-0.4 -25,-0.1 -25,-0.2 -26,-0.0 -0.801 17.5-117.6-118.0 160.3 3.7 -0.2 -2.4 60 60 A C >> - 0 0 0 -2,-0.3 4,-2.3 1,-0.1 3,-1.0 -0.581 19.3-122.9 -95.3 158.7 4.8 -1.8 0.9 61 61 A P H 3> S+ 0 0 50 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.746 109.4 66.3 -69.7 -24.3 4.2 -5.4 2.0 62 62 A K H 34 S+ 0 0 158 1,-0.2 -3,-0.0 2,-0.2 0, 0.0 0.698 112.6 33.2 -70.5 -18.9 2.5 -4.2 5.2 63 63 A C H <> S+ 0 0 27 -3,-1.0 4,-2.7 3,-0.1 3,-0.3 0.788 119.9 47.6-103.1 -42.0 -0.3 -2.7 3.0 64 64 A I H X S+ 0 0 62 -4,-2.3 4,-2.7 1,-0.2 5,-0.2 0.920 110.4 52.0 -66.5 -45.1 -0.4 -5.3 0.1 65 65 A L H X S+ 0 0 118 -4,-2.1 4,-0.6 1,-0.2 -1,-0.2 0.682 115.0 46.0 -65.3 -16.7 -0.4 -8.3 2.5 66 66 A A H 4 S+ 0 0 53 -3,-0.3 -2,-0.2 -5,-0.2 -1,-0.2 0.879 116.1 40.0 -91.2 -47.7 -3.3 -6.5 4.2 67 67 A E H < S+ 0 0 87 -4,-2.7 3,-0.3 1,-0.2 -2,-0.2 0.803 106.0 69.3 -71.6 -29.9 -5.5 -5.5 1.3 68 68 A C H < S+ 0 0 75 -4,-2.7 2,-0.4 1,-0.3 -1,-0.2 0.955 119.5 6.5 -52.2 -57.7 -4.7 -8.8 -0.5 69 69 A K S < S+ 0 0 169 -4,-0.6 -1,-0.3 -5,-0.2 -2,-0.0 -0.920 79.5 160.9-135.6 109.1 -6.8 -10.8 2.0 70 70 A Q - 0 0 112 -2,-0.4 4,-0.1 -3,-0.3 -3,-0.1 -0.910 36.9-104.6-127.7 154.8 -8.9 -9.2 4.7 71 71 A P - 0 0 98 0, 0.0 2,-2.0 0, 0.0 3,-0.2 -0.126 54.1 -75.5 -69.8 169.4 -11.8 -10.2 6.9 72 72 A P S S+ 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.459 109.5 80.8 -69.8 81.7 -15.5 -9.2 6.3 73 73 A E S S+ 0 0 188 -2,-2.0 0, 0.0 -3,-0.0 0, 0.0 0.130 70.5 71.7-174.3 32.3 -15.2 -5.6 7.7 74 74 A A + 0 0 59 -3,-0.2 2,-0.4 -4,-0.1 -4,-0.0 -0.067 63.2 119.6-147.7 36.5 -13.8 -3.5 4.9 75 75 A F + 0 0 212 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.909 37.8 78.9-111.2 132.9 -16.6 -3.2 2.3 76 76 A G S S- 0 0 64 -2,-0.4 2,-0.4 0, 0.0 -2,-0.0 -0.843 77.7 -22.8 175.8-136.5 -18.1 0.1 1.3 77 77 A F - 0 0 200 -2,-0.2 0, 0.0 1,-0.1 0, 0.0 -0.856 58.5-115.1-110.3 143.8 -17.4 3.1 -0.9 78 78 A E - 0 0 186 -2,-0.4 -1,-0.1 1,-0.1 2,-0.0 -0.178 39.5 -92.9 -68.7 165.9 -14.0 4.3 -2.2 79 79 A Q - 0 0 183 1,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.214 30.8-129.3 -75.1 169.4 -12.5 7.6 -1.1 80 80 A A - 0 0 79 -2,-0.0 -1,-0.0 0, 0.0 0, 0.0 -0.936 18.5-131.7-128.4 109.6 -12.9 10.9 -3.1 81 81 A T - 0 0 140 -2,-0.5 2,-0.1 1,-0.1 3,-0.1 -0.061 32.2-101.3 -52.6 156.8 -9.8 12.9 -4.0 82 82 A Q - 0 0 180 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 -0.411 44.9 -85.2 -81.2 159.1 -9.9 16.6 -3.3 83 83 A E - 0 0 170 -2,-0.1 2,-0.4 1,-0.1 -1,-0.2 0.020 45.7-113.0 -55.2 168.8 -10.5 19.3 -6.0 84 84 A Y - 0 0 181 -3,-0.1 2,-0.9 0, 0.0 3,-0.2 -0.881 11.9-141.4-112.5 142.2 -7.6 20.6 -8.1 85 85 A S + 0 0 122 -2,-0.4 -2,-0.0 1,-0.2 0, 0.0 -0.814 42.7 142.2-104.8 94.9 -6.2 24.1 -8.0 86 86 A L - 0 0 133 -2,-0.9 -1,-0.2 0, 0.0 0, 0.0 0.689 47.1-143.6-101.2 -26.4 -5.3 25.1 -11.6 87 87 A S S S+ 0 0 121 -3,-0.2 -2,-0.1 1,-0.0 0, 0.0 0.992 71.4 74.7 58.1 78.3 -6.3 28.8 -11.4 88 88 A G - 0 0 49 3,-0.0 2,-0.1 0, 0.0 -3,-0.0 0.270 63.5-156.3 148.3 74.0 -7.8 29.4 -14.8 89 89 A P - 0 0 119 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.396 62.3 -8.1 -69.8 143.1 -11.2 28.0 -15.8 90 90 A S S S- 0 0 112 1,-0.1 2,-0.2 -2,-0.1 0, 0.0 0.058 74.6-120.3 60.3-177.7 -12.0 27.5 -19.5 91 91 A S 0 0 129 1,-0.0 -1,-0.1 0, 0.0 -3,-0.0 -0.803 360.0 360.0-165.5 118.1 -9.7 28.7 -22.2 92 92 A G 0 0 135 -2,-0.2 -2,-0.1 0, 0.0 -1,-0.0 0.440 360.0 360.0-153.4 360.0 -10.3 31.1 -25.1