==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN/DNA 29-AUG-00 1E7J . COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN D; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR R.CERDAN,D.PAYET,J.-C.YANG,A.A.TRAVERS,D.NEUHAUS . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6749.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 67.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 52.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 217 0, 0.0 2,-1.4 0, 0.0 72,-0.0 0.000 360.0 360.0 360.0-119.2 -26.7 6.7 15.3 2 2 A S + 0 0 131 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.691 360.0 95.3 -93.4 78.8 -24.1 9.5 15.9 3 3 A D - 0 0 105 -2,-1.4 0, 0.0 67,-0.0 0, 0.0 -0.883 59.2-146.1-155.7 174.0 -21.3 7.3 14.6 4 4 A K - 0 0 137 -2,-0.3 63,-0.1 0, 0.0 2,-0.1 -0.964 24.2-116.7-150.0 139.4 -19.4 6.9 11.3 5 5 A P - 0 0 24 0, 0.0 2,-0.3 0, 0.0 58,-0.1 -0.365 29.7-116.0 -75.9 164.5 -17.9 3.6 9.9 6 6 A K - 0 0 163 1,-0.1 60,-0.1 -2,-0.1 0, 0.0 -0.713 29.5-108.0-103.2 153.5 -14.2 3.2 9.4 7 7 A R - 0 0 167 -2,-0.3 2,-1.0 1,-0.1 -1,-0.1 -0.397 38.4 -96.8 -83.5 155.1 -12.7 2.7 5.9 8 8 A P - 0 0 53 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 -0.626 44.6-166.8 -82.0 100.7 -11.2 -0.7 4.9 9 9 A L - 0 0 65 -2,-1.0 2,-0.2 46,-0.2 50,-0.1 -0.432 18.7-118.3 -81.0 158.2 -7.4 -0.6 5.5 10 10 A S > - 0 0 72 -2,-0.1 4,-1.5 1,-0.1 5,-0.1 -0.481 22.6-114.4 -91.1 166.5 -5.0 -3.2 4.1 11 11 A A H > S+ 0 0 2 2,-0.2 4,-1.2 1,-0.2 5,-0.1 0.882 117.5 45.6 -72.3 -40.1 -2.9 -5.4 6.3 12 12 A Y H > S+ 0 0 58 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.852 110.5 56.6 -67.7 -35.3 0.4 -3.9 5.1 13 13 A M H > S+ 0 0 95 1,-0.2 4,-1.3 2,-0.2 -2,-0.2 0.844 104.2 51.1 -69.2 -36.6 -1.1 -0.4 5.5 14 14 A L H X S+ 0 0 34 -4,-1.5 4,-1.5 1,-0.2 -1,-0.2 0.850 110.3 50.0 -67.4 -37.6 -2.0 -0.9 9.2 15 15 A W H X S+ 0 0 12 -4,-1.2 4,-2.2 1,-0.2 -2,-0.2 0.849 106.8 55.0 -71.5 -35.8 1.6 -2.1 9.9 16 16 A L H < S+ 0 0 14 -4,-1.7 4,-0.3 1,-0.2 -1,-0.2 0.860 109.7 46.7 -64.5 -37.8 3.1 1.0 8.2 17 17 A N H < S+ 0 0 87 -4,-1.3 4,-0.3 2,-0.2 -1,-0.2 0.847 115.5 44.0 -74.7 -37.4 1.1 3.4 10.3 18 18 A S H < S+ 0 0 69 -4,-1.5 3,-0.5 1,-0.2 4,-0.2 0.867 117.7 42.9 -78.2 -38.2 1.9 1.7 13.6 19 19 A A S X S+ 0 0 20 -4,-2.2 4,-1.4 1,-0.2 3,-0.5 0.471 89.0 99.6 -84.5 -3.2 5.6 1.1 13.0 20 20 A R H > S+ 0 0 156 -4,-0.3 4,-1.9 1,-0.2 -1,-0.2 0.785 73.9 55.8 -57.9 -39.4 5.9 4.6 11.6 21 21 A E H 4 S+ 0 0 96 -3,-0.5 4,-0.5 -4,-0.3 -1,-0.2 0.893 109.3 45.8 -64.0 -43.8 7.4 6.3 14.7 22 22 A S H > S+ 0 0 76 -3,-0.5 4,-1.2 -4,-0.2 3,-0.4 0.831 112.1 51.7 -69.7 -34.8 10.3 3.9 15.0 23 23 A I H X S+ 0 0 15 -4,-1.4 4,-2.4 1,-0.2 -2,-0.2 0.889 105.8 52.7 -73.1 -41.0 11.2 4.1 11.2 24 24 A K H <>S+ 0 0 99 -4,-1.9 5,-1.0 1,-0.2 -1,-0.2 0.553 105.8 56.8 -77.9 -7.1 11.3 7.9 11.0 25 25 A R H 45S+ 0 0 166 -4,-0.5 -1,-0.2 -3,-0.4 -2,-0.2 0.917 114.9 33.6 -79.9 -52.6 13.8 8.1 14.0 26 26 A E H <5S+ 0 0 147 -4,-1.2 -2,-0.2 2,-0.1 -3,-0.1 0.890 116.5 57.1 -76.7 -41.9 16.4 5.8 12.4 27 27 A N T ><5S- 0 0 49 -4,-2.4 2,-1.3 -5,-0.2 3,-0.7 -0.800 103.8-109.5 -91.7 132.0 15.9 6.9 8.8 28 28 A P T 3 5S- 0 0 129 0, 0.0 -3,-0.1 0, 0.0 -4,-0.1 -0.490 78.8 -37.8 -81.1 91.8 16.4 10.7 8.6 29 29 A G T 3 > - 0 0 140 -2,-0.2 4,-1.2 1,-0.1 3,-1.0 -0.539 28.0-105.7 -93.9 162.9 8.6 10.0 3.5 32 32 A V H 3> S+ 0 0 101 1,-0.3 4,-1.1 2,-0.2 -1,-0.1 0.753 117.5 56.4 -64.5 -29.3 5.9 7.3 3.3 33 33 A T H 34 S+ 0 0 111 1,-0.2 4,-0.3 2,-0.2 -1,-0.3 0.800 110.7 45.2 -72.3 -29.9 6.9 6.2 -0.3 34 34 A E H <> S+ 0 0 101 -3,-1.0 4,-1.2 2,-0.2 3,-0.3 0.674 105.8 60.5 -87.7 -21.9 10.4 5.6 0.9 35 35 A V H X S+ 0 0 10 -4,-1.2 4,-2.6 1,-0.2 -2,-0.2 0.786 95.3 64.2 -73.5 -27.7 9.1 3.8 4.0 36 36 A A H < S+ 0 0 44 -4,-1.1 4,-0.3 1,-0.2 -1,-0.2 0.779 102.1 50.6 -66.1 -26.7 7.4 1.3 1.6 37 37 A K H >4 S+ 0 0 175 -3,-0.3 3,-0.6 -4,-0.3 4,-0.3 0.959 118.3 33.1 -71.3 -57.5 10.9 0.2 0.5 38 38 A R H >X S+ 0 0 154 -4,-1.2 3,-0.9 1,-0.2 4,-0.8 0.825 117.6 54.0 -76.3 -33.2 12.6 -0.4 3.9 39 39 A G H 3X S+ 0 0 0 -4,-2.6 4,-1.8 1,-0.2 -1,-0.2 0.563 93.9 71.3 -80.4 -9.1 9.4 -1.7 5.6 40 40 A G H <> S+ 0 0 24 -3,-0.6 4,-0.5 -4,-0.3 -1,-0.2 0.717 97.4 51.7 -76.3 -21.9 8.9 -4.2 2.8 41 41 A E H <> S+ 0 0 130 -3,-0.9 4,-0.6 -4,-0.3 3,-0.4 0.887 112.9 43.0 -76.1 -44.2 11.9 -6.1 4.3 42 42 A L H < S+ 0 0 84 -4,-0.8 3,-0.3 1,-0.2 -2,-0.2 0.829 102.6 67.4 -74.3 -35.4 10.5 -6.1 7.8 43 43 A W H < S+ 0 0 38 -4,-1.8 3,-0.3 1,-0.2 -1,-0.2 0.769 92.1 63.6 -56.7 -32.8 6.9 -7.0 6.7 44 44 A R H < S+ 0 0 196 -4,-0.5 2,-0.4 -3,-0.4 -1,-0.2 0.947 125.0 0.8 -60.5 -55.4 8.1 -10.5 5.6 45 45 A A S < S+ 0 0 85 -4,-0.6 -1,-0.3 -3,-0.3 3,-0.1 -0.912 88.3 111.1-141.4 110.7 9.2 -11.7 9.1 46 46 A M S S- 0 0 49 1,-0.6 2,-0.1 -2,-0.4 -3,-0.1 0.346 89.4 -51.4-132.7 -75.5 8.7 -9.4 12.0 47 47 A K S S- 0 0 159 1,-0.1 -1,-0.6 -4,-0.1 2,-0.4 -0.089 102.0 -13.4-136.5-123.5 6.0 -10.8 14.3 48 48 A D - 0 0 106 1,-0.2 4,-0.3 -2,-0.1 -1,-0.1 -0.743 36.7-177.6 -95.5 137.7 2.5 -11.8 13.1 49 49 A K S >> S+ 0 0 96 -2,-0.4 4,-1.8 2,-0.1 3,-0.5 0.647 85.6 71.0 -90.5 -25.9 1.1 -10.9 9.8 50 50 A S H 3> S+ 0 0 87 1,-0.2 4,-1.5 2,-0.2 5,-0.1 0.683 88.2 62.7 -68.0 -22.2 -2.1 -12.6 10.9 51 51 A E H 3> S+ 0 0 87 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.924 110.3 37.2 -64.3 -47.7 -2.8 -9.8 13.3 52 52 A W H <> S+ 0 0 32 -3,-0.5 4,-1.6 -4,-0.3 -2,-0.2 0.782 113.9 56.2 -81.9 -29.3 -3.1 -7.2 10.6 53 53 A E H X S+ 0 0 107 -4,-1.8 4,-1.7 2,-0.2 -1,-0.2 0.849 107.2 50.8 -67.4 -37.3 -4.8 -9.7 8.2 54 54 A A H X S+ 0 0 54 -4,-1.5 4,-1.9 2,-0.2 -2,-0.2 0.892 112.8 44.3 -68.5 -41.8 -7.6 -10.3 10.8 55 55 A K H X S+ 0 0 112 -4,-1.3 4,-1.7 2,-0.2 -2,-0.2 0.796 113.3 51.3 -74.9 -29.9 -8.2 -6.6 11.3 56 56 A A H X S+ 0 0 12 -4,-1.6 4,-0.8 2,-0.2 -2,-0.2 0.833 111.0 48.4 -74.1 -34.4 -8.2 -5.9 7.6 57 57 A A H X S+ 0 0 53 -4,-1.7 4,-1.4 2,-0.2 3,-0.3 0.879 113.0 47.1 -72.4 -40.3 -10.7 -8.7 6.9 58 58 A K H X S+ 0 0 167 -4,-1.9 4,-2.1 1,-0.2 -2,-0.2 0.865 109.5 54.2 -67.8 -37.4 -13.0 -7.4 9.7 59 59 A A H X S+ 0 0 22 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.711 104.5 56.8 -70.2 -22.1 -12.7 -3.9 8.4 60 60 A K H X S+ 0 0 130 -4,-0.8 4,-1.8 -3,-0.3 -1,-0.2 0.943 114.1 35.2 -72.2 -51.2 -13.8 -5.1 5.0 61 61 A D H X S+ 0 0 115 -4,-1.4 4,-2.0 2,-0.2 5,-0.2 0.802 116.1 55.7 -76.1 -32.3 -17.1 -6.6 6.1 62 62 A D H X S+ 0 0 93 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.908 109.9 46.5 -66.7 -43.1 -17.7 -3.9 8.8 63 63 A Y H X S+ 0 0 77 -4,-1.4 4,-2.2 2,-0.2 5,-0.2 0.943 112.5 49.4 -61.9 -51.6 -17.4 -1.2 6.1 64 64 A D H X S+ 0 0 126 -4,-1.8 4,-0.5 1,-0.2 -2,-0.2 0.870 117.8 38.8 -59.0 -44.5 -19.7 -3.0 3.6 65 65 A R H X S+ 0 0 200 -4,-2.0 4,-0.8 1,-0.2 3,-0.4 0.891 116.8 49.1 -73.6 -43.0 -22.5 -3.6 6.2 66 66 A A H X S+ 0 0 28 -4,-2.2 4,-1.9 1,-0.2 3,-0.2 0.791 102.8 58.3 -77.0 -29.7 -22.2 -0.3 8.1 67 67 A V H X S+ 0 0 25 -4,-2.2 4,-2.3 1,-0.2 -1,-0.2 0.759 99.7 61.5 -71.0 -22.6 -22.3 2.1 5.1 68 68 A K H X S+ 0 0 151 -4,-0.5 4,-0.8 -3,-0.4 -1,-0.2 0.901 111.5 37.0 -67.2 -41.2 -25.7 0.5 4.1 69 69 A E H X S+ 0 0 130 -4,-0.8 4,-2.2 -3,-0.2 -2,-0.2 0.836 117.0 53.4 -77.5 -36.7 -27.2 1.7 7.4 70 70 A F H < S+ 0 0 77 -4,-1.9 -2,-0.2 1,-0.2 -3,-0.2 0.896 113.9 39.3 -67.3 -46.9 -25.3 5.0 7.4 71 71 A E H < S+ 0 0 154 -4,-2.3 3,-0.2 1,-0.1 -1,-0.2 0.680 117.9 51.2 -82.3 -19.2 -26.3 6.2 3.9 72 72 A A H < S+ 0 0 82 -4,-0.8 2,-0.8 1,-0.3 -2,-0.2 0.972 121.6 25.9 -77.5 -65.7 -29.9 4.9 4.4 73 73 A N < 0 0 146 -4,-2.2 -1,-0.3 1,-0.1 0, 0.0 -0.890 360.0 360.0-103.9 105.2 -30.7 6.5 7.7 74 74 A G 0 0 127 -2,-0.8 -1,-0.1 -3,-0.2 -4,-0.0 0.043 360.0 360.0 172.8 360.0 -28.5 9.6 8.0