==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL PROTEIN 09-JAN-07 2E7B . COMPND 2 MOLECULE: OBSCURIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 103 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7429.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 48.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 13 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 4 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 135 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-120.4 20.5 -17.3 -10.9 2 2 A S - 0 0 111 1,-0.1 0, 0.0 4,-0.0 0, 0.0 -0.694 360.0-123.8-118.9 172.3 21.2 -13.9 -9.3 3 3 A S S S- 0 0 137 -2,-0.2 -1,-0.1 1,-0.0 0, 0.0 0.955 85.3 -45.0 -80.0 -56.8 22.2 -10.5 -10.5 4 4 A G S S- 0 0 58 3,-0.0 -1,-0.0 0, 0.0 0, 0.0 0.103 75.2 -93.3-171.3 38.1 25.4 -9.9 -8.4 5 5 A S + 0 0 116 1,-0.1 -3,-0.0 2,-0.0 0, 0.0 0.871 68.4 158.8 43.6 44.6 24.8 -10.9 -4.8 6 6 A S - 0 0 125 1,-0.1 -1,-0.1 0, 0.0 -4,-0.0 0.984 48.4 -99.0 -59.5 -62.0 23.9 -7.3 -4.1 7 7 A G - 0 0 50 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.509 29.4 -82.4 144.6 146.3 21.9 -7.9 -1.0 8 8 A P - 0 0 66 0, 0.0 2,-0.8 0, 0.0 75,-0.1 -0.283 38.7-121.4 -69.8 155.7 18.3 -8.3 0.4 9 9 A V - 0 0 15 73,-0.1 76,-0.4 76,-0.1 73,-0.1 -0.848 27.4-151.9-104.6 101.4 16.2 -5.3 1.2 10 10 A R - 0 0 122 -2,-0.8 23,-2.1 1,-0.1 2,-0.7 -0.160 16.8-119.7 -65.2 163.4 15.1 -5.4 4.9 11 11 A F > + 0 0 43 21,-0.2 3,-0.5 1,-0.2 21,-0.2 -0.782 35.3 169.4-110.9 87.7 11.9 -3.7 6.1 12 12 A Q T 3 S+ 0 0 137 -2,-0.7 2,-0.2 19,-0.3 -1,-0.2 0.964 84.3 5.6 -59.9 -55.4 12.7 -1.0 8.6 13 13 A E B 3 S-A 31 0A 113 18,-2.2 18,-1.4 3,-0.0 -1,-0.2 -0.612 84.6-179.0-133.3 73.8 9.2 0.5 8.7 14 14 A A < - 0 0 24 -3,-0.5 17,-0.2 16,-0.2 2,-0.1 0.101 45.7 -60.7 -60.7-178.3 6.9 -1.7 6.6 15 15 A L - 0 0 8 15,-0.1 2,-0.3 63,-0.1 73,-0.2 -0.442 57.1-160.3 -70.2 139.2 3.2 -0.9 6.1 16 16 A K - 0 0 140 13,-0.4 13,-0.1 -2,-0.1 73,-0.1 -0.751 35.0 -67.1-117.9 165.9 1.1 -0.7 9.3 17 17 A D - 0 0 123 -2,-0.3 2,-0.4 72,-0.1 74,-0.2 -0.223 53.4-152.3 -52.0 132.6 -2.6 -1.0 10.0 18 18 A L E -d 91 0B 53 72,-1.6 74,-1.5 -3,-0.0 2,-0.5 -0.872 7.0-151.8-113.6 145.7 -4.5 2.1 8.6 19 19 A E E +d 92 0B 179 -2,-0.4 2,-0.3 72,-0.2 74,-0.1 -0.942 30.5 147.6-120.8 111.8 -7.7 3.6 9.9 20 20 A V E -d 93 0B 30 72,-2.5 74,-1.1 -2,-0.5 2,-0.3 -0.983 37.1-127.8-142.2 152.3 -9.9 5.4 7.4 21 21 A L E -d 94 0B 85 -2,-0.3 3,-0.2 72,-0.2 74,-0.1 -0.753 39.8 -92.0-101.6 147.8 -13.6 6.1 6.9 22 22 A E S S+ 0 0 42 72,-2.6 49,-0.1 -2,-0.3 -1,-0.1 -0.354 106.2 55.9 -58.3 123.1 -15.6 5.4 3.7 23 23 A G S S+ 0 0 72 47,-0.3 -1,-0.2 1,-0.2 2,-0.2 0.604 99.6 48.7 124.1 27.6 -15.6 8.6 1.6 24 24 A G S S- 0 0 29 -3,-0.2 46,-1.2 43,-0.1 2,-0.3 -0.624 83.6 -72.6-156.3-144.3 -12.0 9.5 1.1 25 25 A A - 0 0 45 -2,-0.2 2,-0.5 43,-0.1 43,-0.2 -0.989 25.2-142.4-137.9 146.3 -8.6 8.1 0.1 26 26 A A E - B 0 67A 4 41,-1.4 41,-1.1 -2,-0.3 2,-0.6 -0.935 14.6-173.9-112.9 122.0 -6.0 5.7 1.8 27 27 A T E - B 0 66A 62 -2,-0.5 39,-0.2 39,-0.2 2,-0.1 -0.929 9.4-158.4-118.9 109.5 -2.3 6.4 1.4 28 28 A L E - B 0 65A 5 37,-1.7 37,-0.8 -2,-0.6 2,-0.3 -0.426 6.9-162.4 -82.1 158.7 0.1 3.8 2.8 29 29 A R E + B 0 64A 171 35,-0.2 -13,-0.4 -13,-0.1 2,-0.3 -0.999 14.5 164.6-144.6 144.7 3.7 4.5 3.7 30 30 A C E - B 0 63A 3 33,-0.7 33,-1.6 -2,-0.3 2,-0.5 -0.920 22.8-144.1-162.4 132.8 6.8 2.3 4.3 31 31 A V E -AB 13 62A 60 -18,-1.4 -18,-2.2 -2,-0.3 -19,-0.3 -0.873 18.7-141.2-104.3 128.5 10.5 3.0 4.5 32 32 A L - 0 0 5 29,-1.2 -21,-0.2 -2,-0.5 -22,-0.1 -0.452 20.1-120.7 -83.8 158.4 13.0 0.4 3.2 33 33 A S S S+ 0 0 68 -23,-2.1 2,-0.3 1,-0.1 -22,-0.1 0.766 99.1 24.0 -68.2 -25.4 16.3 -0.4 4.9 34 34 A S S S- 0 0 74 -24,-0.4 2,-0.7 2,-0.0 -1,-0.1 -0.989 89.7-103.0-142.2 149.7 18.1 0.7 1.7 35 35 A V + 0 0 102 -2,-0.3 2,-0.3 26,-0.1 -4,-0.0 -0.614 58.7 145.0 -75.7 112.5 17.4 2.9 -1.3 36 36 A A - 0 0 33 -2,-0.7 25,-0.1 -27,-0.0 -4,-0.1 -0.993 26.8-107.8-148.6 152.4 16.4 0.7 -4.2 37 37 A A + 0 0 56 -2,-0.3 2,-0.2 1,-0.1 45,-0.0 -0.975 63.6 13.4-175.0 166.9 14.0 0.9 -7.2 38 38 A P S S- 0 0 115 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.595 72.4-152.0 -69.8 174.5 11.9 0.5 -9.0 39 39 A V - 0 0 33 -2,-0.2 2,-0.4 43,-0.1 43,-0.1 -0.726 6.4-126.3-112.6 163.3 9.7 -1.4 -6.6 40 40 A K E -E 81 0C 130 41,-0.7 41,-0.6 -2,-0.2 2,-0.5 -0.910 16.7-161.1-113.1 137.0 7.0 -4.1 -7.1 41 41 A W E +E 80 0C 9 7,-0.5 7,-1.7 -2,-0.4 2,-0.3 -0.966 12.7 174.0-120.5 128.5 3.5 -3.8 -5.8 42 42 A C E -EF 79 47C 25 37,-1.2 37,-1.0 -2,-0.5 2,-0.4 -0.977 12.0-171.4-133.8 146.3 1.1 -6.8 -5.3 43 43 A Y E -E 78 0C 76 3,-1.5 2,-1.0 -2,-0.3 3,-0.4 -0.882 65.1 -39.7-141.6 106.5 -2.3 -7.3 -3.8 44 44 A G S S- 0 0 58 33,-0.9 3,-0.1 -2,-0.4 -2,-0.0 -0.696 119.2 -27.1 85.2-101.7 -3.9 -10.7 -3.3 45 45 A N S S+ 0 0 167 -2,-1.0 -1,-0.2 2,-0.0 2,-0.0 0.737 122.8 61.5-114.9 -55.2 -3.0 -12.8 -6.3 46 46 A N S S- 0 0 139 -3,-0.4 -3,-1.5 1,-0.1 2,-0.4 -0.268 87.5-105.3 -73.3 163.1 -2.5 -10.5 -9.3 47 47 A V B -F 42 0C 61 -5,-0.2 -5,-0.3 -3,-0.1 2,-0.1 -0.751 31.0-119.9 -94.4 136.6 0.2 -7.8 -9.4 48 48 A L - 0 0 20 -7,-1.7 -7,-0.5 -2,-0.4 -1,-0.0 -0.421 28.2-160.3 -73.2 147.2 -0.7 -4.1 -8.9 49 49 A R - 0 0 190 -2,-0.1 5,-0.3 -9,-0.1 2,-0.2 -0.970 22.9-104.3-132.3 146.5 0.2 -1.7 -11.7 50 50 A P + 0 0 100 0, 0.0 2,-0.2 0, 0.0 5,-0.2 -0.474 68.5 98.5 -69.8 130.8 0.6 2.1 -11.9 51 51 A G S S- 0 0 51 3,-2.1 5,-0.1 -2,-0.2 0, 0.0 -0.792 83.3 -47.3-172.9-143.2 -2.3 4.0 -13.4 52 52 A D S S+ 0 0 163 -2,-0.2 -1,-0.1 1,-0.1 0, 0.0 0.952 127.6 45.8 -81.1 -57.0 -5.5 5.9 -12.7 53 53 A K S S+ 0 0 115 14,-0.1 15,-0.9 -3,-0.1 2,-0.3 0.929 125.3 29.1 -51.6 -51.2 -7.1 3.6 -10.1 54 54 A Y E -C 67 0A 46 -5,-0.3 -3,-2.1 13,-0.1 2,-0.4 -0.835 68.0-159.5-114.3 152.1 -3.8 3.2 -8.2 55 55 A S E -C 66 0A 47 11,-0.8 11,-1.3 -2,-0.3 2,-0.4 -0.911 7.7-169.3-135.6 107.4 -0.9 5.6 -7.9 56 56 A L E +C 65 0A 37 -2,-0.4 2,-0.4 9,-0.2 9,-0.2 -0.790 7.8 178.3 -98.6 137.3 2.6 4.2 -7.0 57 57 A R E -C 64 0A 167 7,-0.9 7,-0.9 -2,-0.4 2,-0.4 -0.999 10.3-164.6-141.2 135.7 5.4 6.6 -6.1 58 58 A Q E +C 63 0A 53 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.974 18.0 155.0-123.9 132.6 9.0 5.9 -5.0 59 59 A E - 0 0 144 3,-2.1 -2,-0.0 -2,-0.4 -22,-0.0 -0.849 68.1 -21.0-159.0 117.4 11.4 8.4 -3.3 60 60 A G S S- 0 0 53 -2,-0.3 3,-0.1 1,-0.2 -25,-0.1 0.953 127.9 -41.0 45.8 76.4 14.4 7.8 -1.1 61 61 A A S S+ 0 0 7 1,-0.2 -29,-1.2 -30,-0.1 2,-0.3 0.874 116.5 121.3 40.2 49.6 13.5 4.3 0.2 62 62 A M E -B 31 0A 75 -31,-0.2 -3,-2.1 -33,-0.0 2,-0.3 -0.982 44.5-163.3-145.2 129.7 9.9 5.4 0.5 63 63 A L E -BC 30 58A 4 -33,-1.6 -33,-0.7 -2,-0.3 2,-0.3 -0.749 2.2-168.5-110.7 158.9 6.7 4.1 -1.1 64 64 A E E -BC 29 57A 53 -7,-0.9 -7,-0.9 -2,-0.3 2,-0.6 -0.853 4.2-178.8-151.8 110.5 3.2 5.6 -1.5 65 65 A L E -BC 28 56A 0 -37,-0.8 -37,-1.7 -2,-0.3 2,-0.3 -0.931 10.5-164.2-115.6 112.3 0.1 3.7 -2.6 66 66 A V E -BC 27 55A 30 -11,-1.3 -11,-0.8 -2,-0.6 2,-0.4 -0.715 2.5-163.2 -95.8 144.4 -3.1 5.8 -2.9 67 67 A V E -BC 26 54A 4 -41,-1.1 -41,-1.4 -2,-0.3 3,-0.3 -0.920 6.4-164.7-131.9 107.8 -6.5 4.2 -3.2 68 68 A R + 0 0 165 -15,-0.9 3,-0.1 -2,-0.4 -43,-0.1 -0.412 69.5 34.4 -85.9 164.3 -9.5 6.2 -4.4 69 69 A N S S- 0 0 121 -45,-0.3 -1,-0.2 1,-0.2 -44,-0.1 0.916 84.5-150.5 58.5 45.5 -13.2 5.3 -4.0 70 70 A L - 0 0 6 -46,-1.2 -47,-0.3 -3,-0.3 -1,-0.2 -0.215 20.2-175.9 -49.7 126.9 -12.5 3.7 -0.6 71 71 A R >> - 0 0 151 -3,-0.1 3,-1.5 -49,-0.1 4,-0.7 -0.930 39.6-121.9-130.6 154.0 -15.0 0.9 -0.1 72 72 A P T 34 S+ 0 0 43 0, 0.0 21,-0.1 0, 0.0 23,-0.1 0.514 115.4 53.9 -69.7 -3.8 -15.8 -1.5 2.8 73 73 A Q T 34 S+ 0 0 158 1,-0.1 -3,-0.0 3,-0.0 0, 0.0 0.437 93.5 69.4-107.9 -4.9 -15.1 -4.4 0.4 74 74 A D T <4 + 0 0 26 -3,-1.5 17,-0.1 2,-0.1 -1,-0.1 0.782 67.5 112.7 -82.5 -29.7 -11.7 -3.2 -0.6 75 75 A S < + 0 0 48 -4,-0.7 2,-0.1 18,-0.1 17,-0.1 -0.225 45.8 120.1 -48.3 114.1 -10.2 -3.9 2.8 76 76 A G - 0 0 24 13,-0.1 2,-0.5 -2,-0.0 15,-0.5 -0.427 68.1 -54.3-146.4-138.4 -7.7 -6.8 2.1 77 77 A R - 0 0 171 -2,-0.1 -33,-0.9 13,-0.1 2,-0.8 -0.867 42.0-169.9-125.8 97.8 -4.1 -7.7 2.3 78 78 A Y E +EG 43 89C 3 11,-1.3 11,-1.4 -2,-0.5 2,-0.5 -0.771 12.9 175.4 -90.9 107.5 -1.7 -5.3 0.6 79 79 A S E -E 42 0C 23 -37,-1.0 -37,-1.2 -2,-0.8 2,-0.6 -0.949 21.1-145.2-117.2 129.9 1.8 -6.8 0.5 80 80 A C E -E 41 0C 0 -2,-0.5 7,-1.3 7,-0.4 2,-0.8 -0.820 9.4-148.1 -96.5 123.4 4.8 -5.2 -1.3 81 81 A S E +EH 40 86C 46 -41,-0.6 -41,-0.7 -2,-0.6 2,-0.3 -0.800 38.8 139.6 -94.3 107.9 7.2 -7.5 -2.9 82 82 A F - 0 0 30 3,-0.9 3,-0.4 -2,-0.8 2,-0.3 -0.937 58.7 -20.9-152.2 124.7 10.8 -6.1 -2.8 83 83 A G S S- 0 0 55 -2,-0.3 -73,-0.1 1,-0.2 3,-0.0 -0.614 109.1 -42.9 83.4-138.3 14.1 -7.7 -2.1 84 84 A D S S+ 0 0 120 -2,-0.3 2,-0.2 -75,-0.1 -1,-0.2 0.694 123.1 60.8-101.5 -27.2 14.2 -11.0 -0.2 85 85 A Q - 0 0 102 -76,-0.4 -3,-0.9 -3,-0.4 2,-0.4 -0.644 68.9-149.6-101.4 159.6 11.6 -10.2 2.4 86 86 A T B -H 81 0C 88 -2,-0.2 2,-0.3 -5,-0.1 -5,-0.2 -0.976 4.1-152.4-131.6 144.3 8.0 -9.3 2.0 87 87 A T - 0 0 14 -7,-1.3 -7,-0.4 -2,-0.4 2,-0.3 -0.734 8.4-170.7-112.5 162.2 5.6 -7.1 4.0 88 88 A S + 0 0 55 -2,-0.3 2,-0.3 -73,-0.2 -9,-0.2 -0.973 6.7 171.9-155.0 136.9 1.8 -7.1 4.5 89 89 A A B -G 78 0C 6 -11,-1.4 -11,-1.3 -2,-0.3 2,-0.4 -0.853 22.1-128.4-138.2 173.1 -0.7 -4.8 6.1 90 90 A T - 0 0 68 -2,-0.3 -72,-1.6 -13,-0.2 2,-0.3 -0.982 13.7-143.7-130.4 140.0 -4.5 -4.4 6.5 91 91 A L E -d 18 0B 3 -15,-0.5 2,-0.6 -2,-0.4 -72,-0.2 -0.766 8.9-143.5-102.7 147.3 -6.7 -1.4 5.8 92 92 A T E +d 19 0B 62 -74,-1.5 -72,-2.5 -2,-0.3 2,-0.5 -0.936 19.8 176.3-114.6 116.1 -9.8 -0.4 7.8 93 93 A V E -d 20 0B 15 -2,-0.6 2,-0.5 -74,-0.1 -72,-0.2 -0.952 12.7-158.6-123.3 114.1 -12.8 1.1 6.0 94 94 A T E -d 21 0B 81 -74,-1.1 -72,-2.6 -2,-0.5 2,-0.4 -0.783 25.0-117.9 -94.0 128.6 -15.9 1.9 7.9 95 95 A A - 0 0 58 -2,-0.5 -24,-0.1 -74,-0.1 -1,-0.0 -0.483 43.1 -98.2 -66.5 119.8 -19.2 2.2 6.0 96 96 A L - 0 0 83 -2,-0.4 -1,-0.1 1,-0.2 -73,-0.1 0.077 27.0-120.0 -35.8 144.0 -20.5 5.8 6.3 97 97 A P - 0 0 108 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.495 39.3-124.8 -69.7 -2.4 -23.3 6.1 9.0 98 98 A S + 0 0 113 2,-0.0 -2,-0.0 1,-0.0 -3,-0.0 0.931 51.1 167.9 56.9 48.8 -25.6 7.2 6.2 99 99 A G - 0 0 36 1,-0.1 -3,-0.0 0, 0.0 -1,-0.0 0.231 57.9 -61.6 -74.1-158.2 -26.4 10.4 8.0 100 100 A P S S+ 0 0 142 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.431 89.4 138.6 -69.8 2.8 -28.2 13.5 6.7 101 101 A S - 0 0 91 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.164 55.8-136.3 -51.2 140.4 -25.3 13.9 4.2 102 102 A S 0 0 129 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.988 360.0 360.0 -64.1 -61.8 -26.5 14.9 0.8 103 103 A G 0 0 112 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.445 360.0 360.0 94.2 360.0 -24.3 12.5 -1.2