==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-JAN-07 2E7N . COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,C.KUROSAKI,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 117 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7759.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 80 68.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 18 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 57 48.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 1 0 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 90 0, 0.0 2,-0.4 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 149.8 -11.8 9.6 18.3 2 2 A S - 0 0 115 1,-0.2 4,-0.0 2,-0.2 0, 0.0 -0.896 360.0 -16.0-109.5 133.3 -15.3 8.1 18.5 3 3 A S S S+ 0 0 135 -2,-0.4 -1,-0.2 2,-0.0 2,-0.1 0.859 136.5 43.6 44.0 41.9 -17.6 7.9 15.5 4 4 A G S S- 0 0 49 -3,-0.2 2,-1.3 2,-0.0 -2,-0.2 -0.320 82.4-121.9 153.3 121.7 -15.4 10.5 13.8 5 5 A S - 0 0 49 -4,-0.1 2,-0.2 -2,-0.1 14,-0.1 -0.649 34.6-136.2 -82.5 93.2 -11.7 11.1 13.4 6 6 A S - 0 0 105 -2,-1.3 -2,-0.0 1,-0.1 -1,-0.0 -0.281 24.7-128.0 -51.9 113.6 -11.2 14.5 15.0 7 7 A G + 0 0 39 -2,-0.2 2,-0.1 5,-0.1 -1,-0.1 0.119 37.8 160.3 -55.3 177.6 -8.9 16.3 12.5 8 8 A G - 0 0 28 2,-0.2 3,-0.1 3,-0.1 -2,-0.0 -0.237 65.6 -6.4 156.8 110.4 -5.7 18.0 13.7 9 9 A K S S+ 0 0 183 1,-0.2 2,-0.3 -2,-0.1 -2,-0.0 0.825 106.5 108.8 61.6 31.9 -2.5 19.2 11.9 10 10 A L S S- 0 0 38 4,-0.0 -1,-0.2 2,-0.0 -2,-0.2 -0.992 77.6 -93.7-140.6 147.0 -3.8 17.5 8.7 11 11 A S > - 0 0 43 -2,-0.3 4,-2.3 1,-0.1 5,-0.3 -0.157 46.7-101.2 -55.5 150.1 -5.2 18.7 5.4 12 12 A E T 4 S+ 0 0 141 1,-0.2 4,-0.3 2,-0.2 -1,-0.1 0.802 127.7 31.1 -42.3 -33.4 -9.0 19.0 5.1 13 13 A H T >> S+ 0 0 83 2,-0.1 4,-2.1 3,-0.1 3,-1.8 0.894 112.1 60.9 -92.0 -52.8 -8.8 15.7 3.3 14 14 A L H 3> S+ 0 0 7 1,-0.3 4,-2.9 2,-0.2 5,-0.3 0.899 96.7 62.0 -39.6 -57.6 -5.8 14.1 4.9 15 15 A R H 3< S+ 0 0 104 -4,-2.3 4,-0.3 1,-0.3 -1,-0.3 0.841 110.8 40.8 -38.6 -43.2 -7.5 14.1 8.3 16 16 A Y H X> S+ 0 0 55 -3,-1.8 3,-1.3 -5,-0.3 4,-1.1 0.897 112.4 54.4 -75.1 -42.2 -10.2 11.9 6.7 17 17 A C H >X S+ 0 0 0 -4,-2.1 4,-1.3 1,-0.3 3,-0.5 0.941 91.6 71.2 -56.7 -51.3 -7.7 9.8 4.8 18 18 A D H 3X S+ 0 0 52 -4,-2.9 4,-1.2 1,-0.3 -1,-0.3 0.768 101.4 49.9 -36.2 -31.1 -5.7 8.9 7.9 19 19 A S H <> S+ 0 0 22 -3,-1.3 4,-2.2 -4,-0.3 5,-0.3 0.939 94.4 67.1 -76.5 -50.4 -8.8 6.8 8.7 20 20 A I H < S+ 0 0 65 -4,-2.2 3,-1.2 1,-0.2 6,-0.4 0.926 103.8 53.9 -77.4 -48.1 -9.7 0.7 8.6 24 24 A M H 3< S+ 0 0 1 -4,-1.3 -2,-0.2 1,-0.3 -1,-0.2 0.688 101.8 64.7 -60.2 -16.9 -7.7 -1.4 6.1 25 25 A L T 3< S+ 0 0 53 -4,-1.1 2,-0.3 -5,-0.1 -1,-0.3 -0.099 80.1 119.8 -98.0 34.4 -5.7 -2.4 9.1 26 26 A S S <> S- 0 0 49 -3,-1.2 4,-2.0 1,-0.1 3,-0.4 -0.774 75.4-122.8-102.5 145.6 -8.7 -4.2 10.7 27 27 A K H > S+ 0 0 196 -2,-0.3 4,-0.6 1,-0.2 -1,-0.1 0.702 112.7 62.3 -56.0 -18.2 -8.8 -7.9 11.6 28 28 A K H >4 S+ 0 0 132 1,-0.2 3,-0.6 -5,-0.2 -1,-0.2 0.951 111.5 31.6 -73.2 -52.0 -11.9 -7.9 9.4 29 29 A H H >> S+ 0 0 24 -3,-0.4 3,-1.5 -6,-0.4 4,-1.2 0.605 99.2 89.1 -80.9 -12.5 -10.1 -6.9 6.1 30 30 A A H 3X S+ 0 0 19 -4,-2.0 4,-2.6 1,-0.3 3,-0.5 0.880 71.7 71.8 -51.0 -42.2 -7.0 -8.7 7.4 31 31 A A H << S+ 0 0 60 -4,-0.6 -1,-0.3 -3,-0.6 -2,-0.1 0.851 123.2 11.7 -42.1 -42.3 -8.3 -11.9 5.7 32 32 A Y H <4 S+ 0 0 33 -3,-1.5 74,-0.3 -4,-0.2 -1,-0.3 0.253 130.3 58.3-120.4 7.4 -7.5 -10.3 2.4 33 33 A A H >< S+ 0 0 0 -4,-1.2 3,-0.8 -3,-0.5 -3,-0.2 0.368 83.2 81.3-115.8 -0.9 -5.5 -7.3 3.7 34 34 A W G >X + 0 0 114 -4,-2.6 3,-3.0 -5,-0.3 4,-0.7 0.805 69.0 81.3 -75.6 -30.8 -2.8 -9.4 5.5 35 35 A P G 34 S+ 0 0 30 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.751 101.3 41.6 -48.0 -19.0 -0.8 -10.0 2.3 36 36 A F G <4 S+ 0 0 12 -3,-0.8 24,-1.0 -6,-0.1 25,-0.5 -0.169 92.0 88.3-120.5 37.9 0.5 -6.5 3.1 37 37 A Y T <4 S+ 0 0 64 -3,-3.0 -1,-0.1 23,-0.1 -3,-0.1 0.716 83.2 52.8-103.5 -30.9 1.0 -6.8 6.8 38 38 A K S < S- 0 0 123 -4,-0.7 22,-0.1 1,-0.1 -1,-0.1 -0.804 83.9-115.8-109.6 150.3 4.5 -8.2 6.8 39 39 A P - 0 0 108 0, 0.0 2,-0.4 0, 0.0 -1,-0.1 0.036 26.3-116.5 -69.8-176.9 7.6 -6.8 5.2 40 40 A V - 0 0 55 5,-0.0 2,-0.5 19,-0.0 3,-0.1 -0.982 23.7-177.2-132.7 123.3 9.7 -8.4 2.4 41 41 A D > - 0 0 83 -2,-0.4 4,-3.1 1,-0.2 6,-0.3 -0.865 6.8-174.2-122.6 97.2 13.3 -9.6 2.6 42 42 A A T 4 S+ 0 0 32 -2,-0.5 5,-0.3 1,-0.2 -1,-0.2 0.879 88.5 51.6 -54.4 -40.8 14.7 -11.0 -0.6 43 43 A E T 4 S+ 0 0 185 1,-0.1 -1,-0.2 -3,-0.1 -2,-0.1 0.987 118.7 32.8 -60.8 -62.7 17.9 -11.9 1.2 44 44 A A T 4 S+ 0 0 76 2,-0.1 -2,-0.2 -4,-0.0 -1,-0.1 0.968 115.9 63.5 -59.1 -56.9 16.3 -13.8 4.1 45 45 A L S < S- 0 0 82 -4,-3.1 -5,-0.0 1,-0.1 0, 0.0 -0.246 86.7-125.0 -67.7 158.3 13.3 -15.1 2.1 46 46 A E + 0 0 178 2,-0.1 -1,-0.1 0, 0.0 -4,-0.1 -0.111 55.5 153.9 -96.1 35.5 14.0 -17.5 -0.8 47 47 A L - 0 0 56 -5,-0.3 2,-0.4 -6,-0.3 -5,-0.0 0.138 45.7-119.1 -53.1 178.2 12.1 -15.3 -3.3 48 48 A H S S- 0 0 151 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.829 77.2 -37.0-131.0 94.3 12.9 -15.3 -7.0 49 49 A D S > S+ 0 0 107 -2,-0.4 4,-1.6 3,-0.1 5,-0.2 0.938 79.9 163.1 57.9 49.8 14.1 -12.0 -8.4 50 50 A Y H >> S+ 0 0 20 2,-0.2 4,-3.0 1,-0.2 3,-0.6 0.996 71.8 41.6 -60.8 -68.6 11.8 -10.0 -6.2 51 51 A H H 34 S+ 0 0 98 1,-0.2 -1,-0.2 2,-0.2 5,-0.0 0.887 107.4 65.9 -46.3 -46.0 13.4 -6.6 -6.5 52 52 A D H 34 S+ 0 0 102 1,-0.2 -1,-0.2 3,-0.1 3,-0.2 0.916 114.0 28.7 -42.1 -58.9 13.9 -7.2 -10.2 53 53 A I H << S+ 0 0 60 -4,-1.6 2,-0.8 -3,-0.6 -2,-0.2 0.942 129.8 42.0 -70.3 -49.5 10.1 -7.2 -10.8 54 54 A I < + 0 0 1 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.0 -0.827 61.9 165.8-104.8 97.1 9.3 -4.8 -8.0 55 55 A K S S+ 0 0 167 -2,-0.8 -1,-0.2 1,-0.3 -2,-0.1 0.933 77.8 39.2 -73.6 -48.3 11.8 -2.0 -7.9 56 56 A H S S- 0 0 109 -5,-0.0 -1,-0.3 28,-0.0 32,-0.1 -0.742 84.1-169.2-107.4 84.4 9.9 0.3 -5.6 57 57 A P - 0 0 53 0, 0.0 2,-0.3 0, 0.0 28,-0.1 -0.266 4.2-172.8 -69.7 157.5 8.3 -2.1 -3.0 58 58 A M - 0 0 18 27,-0.2 2,-0.3 26,-0.1 3,-0.1 -0.980 9.2-178.2-150.1 159.1 5.6 -0.9 -0.6 59 59 A D >> - 0 0 27 -2,-0.3 4,-2.0 1,-0.1 3,-0.8 -0.989 40.2-109.5-158.3 153.7 3.6 -2.1 2.5 60 60 A L H 3> S+ 0 0 2 -24,-1.0 4,-2.6 -2,-0.3 5,-0.2 0.937 117.7 56.8 -48.8 -55.8 0.9 -1.0 4.9 61 61 A S H 3> S+ 0 0 74 -25,-0.5 4,-1.8 1,-0.2 -1,-0.3 0.839 108.7 50.2 -45.8 -37.5 3.3 -0.6 7.7 62 62 A T H <> S+ 0 0 56 -3,-0.8 4,-2.0 2,-0.2 -1,-0.2 0.984 107.9 48.5 -66.7 -60.1 5.3 1.7 5.5 63 63 A V H X S+ 0 0 2 -4,-2.0 4,-2.6 1,-0.2 5,-0.2 0.892 110.2 55.5 -46.9 -46.6 2.4 4.0 4.5 64 64 A K H X S+ 0 0 87 -4,-2.6 4,-2.9 2,-0.2 3,-0.5 0.973 104.6 49.3 -51.4 -66.6 1.4 4.3 8.1 65 65 A R H X S+ 0 0 197 -4,-1.8 4,-2.1 1,-0.3 -1,-0.2 0.869 112.6 50.5 -40.7 -47.2 4.7 5.5 9.4 66 66 A K H <>S+ 0 0 71 -4,-2.0 5,-2.6 1,-0.2 6,-0.5 0.923 112.2 45.5 -59.8 -46.4 4.7 8.1 6.7 67 67 A M H ><5S+ 0 0 1 -4,-2.6 3,-1.1 -3,-0.5 -1,-0.2 0.825 109.8 56.7 -66.9 -31.8 1.1 9.2 7.6 68 68 A D H 3<5S+ 0 0 75 -4,-2.9 -1,-0.2 1,-0.3 -2,-0.2 0.881 108.0 46.2 -67.3 -39.2 2.1 9.3 11.2 69 69 A G T 3<5S- 0 0 51 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.139 112.0-119.2 -90.4 20.9 5.0 11.7 10.6 70 70 A R T < 5 + 0 0 119 -3,-1.1 -3,-0.2 1,-0.1 -2,-0.1 0.807 65.2 148.6 46.0 32.4 2.8 13.9 8.4 71 71 A E < + 0 0 140 -5,-2.6 -4,-0.2 -6,-0.2 -1,-0.1 0.846 44.6 86.9 -63.1 -34.5 5.2 13.1 5.7 72 72 A Y - 0 0 10 -6,-0.5 3,-0.1 1,-0.2 4,-0.0 -0.536 67.7-155.1 -72.7 125.1 2.4 13.4 3.1 73 73 A P S S- 0 0 101 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.772 74.3 -12.2 -69.7 -27.1 1.9 16.9 1.9 74 74 A D S > S- 0 0 64 1,-0.1 4,-1.7 -63,-0.1 5,-0.1 -0.935 82.2 -81.3-160.1 179.4 -1.8 16.2 1.0 75 75 A A H > S+ 0 0 3 -2,-0.3 4,-3.0 1,-0.2 5,-0.3 0.867 122.1 61.1 -59.5 -37.8 -4.3 13.4 0.6 76 76 A Q H > S+ 0 0 127 1,-0.2 4,-3.1 2,-0.2 -1,-0.2 0.942 103.9 47.8 -55.1 -52.0 -3.0 12.8 -3.0 77 77 A G H > S+ 0 0 19 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.907 114.0 47.4 -56.8 -44.7 0.4 11.9 -1.7 78 78 A F H X S+ 0 0 0 -4,-1.7 4,-1.5 2,-0.2 -2,-0.2 0.970 115.4 43.1 -61.6 -56.5 -1.0 9.5 0.9 79 79 A A H X S+ 0 0 8 -4,-3.0 4,-2.4 1,-0.2 -2,-0.2 0.906 106.7 64.1 -56.5 -44.4 -3.4 7.8 -1.4 80 80 A A H X S+ 0 0 53 -4,-3.1 4,-1.8 -5,-0.3 3,-0.3 0.930 101.6 48.4 -44.2 -60.3 -0.7 7.6 -4.1 81 81 A D H X S+ 0 0 27 -4,-1.7 4,-2.1 1,-0.2 3,-0.3 0.921 109.5 53.1 -47.7 -52.6 1.5 5.3 -2.0 82 82 A V H X S+ 0 0 1 -4,-1.5 4,-1.2 1,-0.2 -1,-0.2 0.901 104.7 55.9 -51.0 -45.9 -1.4 3.1 -1.2 83 83 A R H X S+ 0 0 128 -4,-2.4 4,-2.0 -3,-0.3 3,-0.5 0.907 106.4 50.6 -54.4 -45.4 -2.2 2.7 -4.9 84 84 A L H X S+ 0 0 43 -4,-1.8 4,-2.5 -3,-0.3 -1,-0.2 0.947 98.3 64.9 -58.9 -51.4 1.4 1.5 -5.5 85 85 A M H X S+ 0 0 5 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.845 110.1 40.5 -39.3 -43.2 1.2 -1.2 -2.8 86 86 A F H >X S+ 0 0 4 -4,-1.2 4,-2.2 -3,-0.5 3,-0.6 0.990 107.0 57.2 -71.6 -64.9 -1.5 -2.8 -4.9 87 87 A S H 3X S+ 0 0 75 -4,-2.0 4,-0.8 1,-0.3 -2,-0.2 0.794 106.3 57.2 -35.9 -36.0 -0.0 -2.4 -8.4 88 88 A N H >X S+ 0 0 11 -4,-2.5 4,-3.1 2,-0.2 3,-1.4 0.978 106.3 44.1 -62.7 -58.6 2.9 -4.3 -6.9 89 89 A C H - 0 0 68 0, 0.0 3,-1.8 0, 0.0 6,-0.2 -0.141 27.6-101.7 -69.8 168.2 0.7 -14.0 -11.3 95 95 A P T 3 S+ 0 0 120 0, 0.0 -2,-0.1 0, 0.0 -5,-0.0 0.501 123.8 55.4 -69.8 -2.8 -2.9 -13.7 -12.6 96 96 A D T 3 S+ 0 0 150 4,-0.0 2,-0.4 5,-0.0 3,-0.0 0.335 80.1 115.7-109.9 2.6 -3.5 -17.1 -11.1 97 97 A H X> - 0 0 78 -3,-1.8 3,-1.3 1,-0.1 4,-0.6 -0.606 62.1-144.1 -78.1 128.7 -2.3 -16.2 -7.6 98 98 A E H >> S+ 0 0 155 -2,-0.4 3,-1.7 1,-0.3 4,-1.3 0.893 98.7 67.4 -57.2 -42.0 -5.1 -16.4 -4.9 99 99 A V H 3> S+ 0 0 13 1,-0.3 4,-2.9 2,-0.2 -1,-0.3 0.803 91.0 65.0 -48.9 -31.3 -3.6 -13.3 -3.2 100 100 A V H <> S+ 0 0 19 -3,-1.3 4,-1.5 1,-0.2 -1,-0.3 0.883 100.3 48.9 -60.8 -39.7 -4.6 -11.4 -6.3 101 101 A A H X S+ 0 0 0 -4,-2.9 4,-2.2 1,-0.2 3,-1.4 0.907 102.9 57.6 -46.4 -50.7 -5.9 -7.7 -2.6 104 104 A R H 3X S+ 0 0 161 -4,-1.5 4,-3.1 1,-0.3 5,-0.3 0.926 96.0 62.1 -46.9 -54.7 -8.8 -6.5 -4.8 105 105 A K H 3X S+ 0 0 105 -4,-1.0 4,-0.7 -3,-0.3 -1,-0.3 0.828 110.4 42.4 -41.5 -38.0 -11.3 -6.9 -1.9 106 106 A L H XX S+ 0 0 0 -3,-1.4 4,-2.4 -4,-1.0 3,-1.0 0.956 111.3 51.6 -75.8 -54.1 -9.2 -4.2 -0.2 107 107 A Q H 3X S+ 0 0 60 -4,-2.2 4,-1.9 1,-0.3 -2,-0.2 0.906 104.5 58.8 -49.0 -48.0 -8.6 -1.9 -3.2 108 108 A D H 3X S+ 0 0 121 -4,-3.1 4,-1.7 1,-0.2 -1,-0.3 0.861 111.0 42.5 -50.9 -38.8 -12.4 -1.9 -3.8 109 109 A V H