==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 11-JAN-07 2E7O . COMPND 2 MOLECULE: BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN 2B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR X.R.QIN,C.KUROSAKI,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 112 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7311.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 83 74.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 13.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 57 50.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 118 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-126.9 -5.8 29.2 -7.6 2 2 A S + 0 0 132 1,-0.2 2,-0.9 2,-0.0 3,-0.2 0.762 360.0 143.7 74.0 25.7 -6.2 29.3 -3.8 3 3 A S + 0 0 117 1,-0.1 -1,-0.2 2,-0.0 0, 0.0 -0.779 36.9 78.4-102.0 91.5 -7.3 25.7 -3.8 4 4 A G - 0 0 48 -2,-0.9 -1,-0.1 -3,-0.1 3,-0.1 0.319 42.7-180.0-152.7 -60.9 -5.8 24.1 -0.7 5 5 A S + 0 0 115 -3,-0.2 2,-0.3 1,-0.2 -2,-0.0 0.868 52.6 120.4 44.5 43.4 -7.6 24.8 2.6 6 6 A S - 0 0 73 1,-0.1 -1,-0.2 4,-0.0 2,-0.1 -0.796 46.1-159.2-129.5 171.7 -5.0 22.6 4.3 7 7 A G - 0 0 36 -2,-0.3 -1,-0.1 -3,-0.1 0, 0.0 -0.132 39.4 -80.4-124.3-139.6 -2.3 22.9 7.0 8 8 A D S S+ 0 0 140 -2,-0.1 4,-0.4 3,-0.1 -1,-0.1 0.862 117.1 7.5 -99.8 -58.5 0.8 21.2 8.1 9 9 A S S >> S+ 0 0 89 2,-0.2 4,-2.9 3,-0.1 3,-0.9 0.867 117.0 72.1 -92.2 -46.2 -0.3 18.1 10.1 10 10 A K H 3> S+ 0 0 135 1,-0.3 4,-1.7 2,-0.2 -1,-0.1 0.864 100.0 49.0 -34.1 -57.2 -4.0 18.3 9.5 11 11 A D H 3> S+ 0 0 7 1,-0.2 4,-1.3 2,-0.2 -1,-0.3 0.902 114.3 46.1 -52.8 -45.0 -3.5 17.1 5.9 12 12 A L H <> S+ 0 0 27 -3,-0.9 4,-1.5 -4,-0.4 3,-0.3 0.954 102.1 63.6 -64.0 -51.7 -1.2 14.3 7.1 13 13 A A H >X S+ 0 0 60 -4,-2.9 4,-0.9 1,-0.3 3,-0.6 0.869 102.8 51.2 -38.6 -50.2 -3.6 13.2 9.9 14 14 A L H >X S+ 0 0 42 -4,-1.7 3,-1.9 -5,-0.2 4,-1.4 0.947 99.9 61.6 -55.4 -53.2 -6.1 12.3 7.2 15 15 A C H 3X S+ 0 0 0 -4,-1.3 4,-2.2 1,-0.3 -1,-0.2 0.841 99.2 58.4 -41.9 -40.4 -3.6 10.2 5.2 16 16 A S H < S+ 0 0 99 -4,-1.7 3,-1.6 1,-0.3 -1,-0.2 0.918 116.1 47.2 -43.6 -56.7 -9.1 1.4 6.1 22 22 A M H >< S+ 0 0 0 -4,-2.4 3,-1.7 1,-0.3 -1,-0.3 0.886 106.0 59.0 -54.5 -41.6 -7.2 0.3 3.0 23 23 A E H 3< S+ 0 0 33 -4,-3.0 -1,-0.3 1,-0.3 -2,-0.2 0.732 105.0 52.2 -60.9 -21.5 -4.8 -1.7 5.3 24 24 A T T << S+ 0 0 103 -3,-1.6 2,-0.3 -4,-1.2 -1,-0.3 -0.109 85.5 124.0-106.3 34.1 -7.9 -3.6 6.5 25 25 A H X - 0 0 59 -3,-1.7 3,-2.0 1,-0.1 4,-0.4 -0.746 69.9-127.8 -97.9 143.6 -9.1 -4.5 3.0 26 26 A E T 3 S+ 0 0 160 -2,-0.3 -1,-0.1 1,-0.3 69,-0.1 0.631 116.0 37.1 -61.6 -11.8 -9.7 -8.1 1.9 27 27 A D T 3 S+ 0 0 29 -5,-0.2 72,-0.4 68,-0.1 -1,-0.3 -0.134 98.1 79.8-132.1 36.9 -7.4 -7.2 -1.0 28 28 A A X> + 0 0 0 -3,-2.0 4,-1.5 -5,-0.1 3,-0.8 0.336 68.2 83.8-122.3 0.4 -4.9 -5.0 0.7 29 29 A W H 3> + 0 0 132 -4,-0.4 4,-1.2 1,-0.2 -2,-0.1 0.801 67.9 81.7 -75.2 -30.1 -2.7 -7.7 2.3 30 30 A P H 34 S+ 0 0 12 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.756 112.2 23.9 -48.0 -19.5 -0.7 -8.2 -0.9 31 31 A F H <4 S+ 0 0 12 -3,-0.8 23,-0.6 21,-0.1 -2,-0.2 0.676 97.6 90.3-114.1 -33.9 1.2 -5.2 0.4 32 32 A L H < S+ 0 0 52 -4,-1.5 22,-0.5 21,-0.2 -3,-0.1 0.808 95.5 46.0 -31.7 -43.7 0.5 -5.3 4.1 33 33 A L S < S- 0 0 131 -4,-1.2 20,-0.1 20,-0.1 2,-0.1 -0.832 96.9-108.3-109.1 145.5 3.7 -7.4 4.3 34 34 A P - 0 0 71 0, 0.0 2,-0.7 0, 0.0 18,-0.1 -0.377 35.4-107.5 -69.7 145.4 7.0 -6.7 2.6 35 35 A V - 0 0 47 16,-0.2 2,-0.6 -2,-0.1 9,-0.1 -0.647 31.4-126.2 -78.4 112.6 8.1 -8.9 -0.3 36 36 A N > - 0 0 94 -2,-0.7 4,-3.1 1,-0.2 -1,-0.1 -0.430 20.2-165.8 -61.6 106.1 10.9 -11.2 0.8 37 37 A L T 4 S+ 0 0 78 -2,-0.6 5,-0.5 1,-0.2 6,-0.3 0.861 89.4 52.5 -61.9 -36.4 13.7 -10.5 -1.7 38 38 A K T 4 S+ 0 0 205 1,-0.1 -1,-0.2 3,-0.1 -2,-0.1 0.868 118.5 36.1 -67.7 -37.3 15.5 -13.6 -0.6 39 39 A L T 4 S+ 0 0 131 2,-0.1 -2,-0.2 -3,-0.0 -1,-0.1 0.968 106.0 70.8 -79.3 -61.2 12.4 -15.7 -1.1 40 40 A V S < S- 0 0 34 -4,-3.1 2,-1.2 1,-0.1 3,-0.5 -0.306 96.5-106.8 -60.5 137.4 10.9 -14.1 -4.2 41 41 A P S S- 0 0 114 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 -0.515 87.8 -34.4 -69.8 94.4 12.8 -14.8 -7.4 42 42 A G S S+ 0 0 24 -2,-1.2 4,-0.4 -5,-0.5 -4,-0.1 0.978 79.3 160.3 53.5 80.5 14.4 -11.4 -8.1 43 43 A Y >> + 0 0 12 -3,-0.5 4,-3.2 -6,-0.3 3,-0.5 0.866 69.6 51.4 -95.3 -49.4 11.8 -9.0 -6.8 44 44 A K T 34 S+ 0 0 110 1,-0.2 -1,-0.1 2,-0.2 -2,-0.0 0.873 103.0 63.1 -56.2 -39.0 13.8 -5.8 -6.4 45 45 A K T 34 S+ 0 0 171 1,-0.2 -1,-0.2 3,-0.0 -2,-0.1 0.908 113.9 32.6 -52.9 -46.0 15.2 -6.2 -9.9 46 46 A V T <4 S+ 0 0 72 -3,-0.5 2,-0.8 -4,-0.4 -2,-0.2 0.897 118.0 58.3 -78.5 -43.4 11.7 -5.8 -11.3 47 47 A I < - 0 0 2 -4,-3.2 -1,-0.2 1,-0.2 -4,-0.0 -0.803 64.4-168.4 -94.3 109.4 10.5 -3.4 -8.6 48 48 A K S S+ 0 0 179 -2,-0.8 -1,-0.2 1,-0.3 -2,-0.0 0.942 87.0 20.8 -59.0 -50.2 12.6 -0.3 -8.5 49 49 A K S S- 0 0 122 28,-0.1 2,-1.3 2,-0.0 -1,-0.3 -0.791 76.9-159.1-126.1 88.9 11.1 0.9 -5.2 50 50 A P + 0 0 37 0, 0.0 2,-0.2 0, 0.0 28,-0.1 -0.511 23.5 178.1 -69.7 93.4 9.4 -2.0 -3.3 51 51 A M - 0 0 24 -2,-1.3 2,-0.3 26,-0.1 -16,-0.2 -0.496 7.3-175.8 -94.6 166.3 7.0 -0.2 -1.0 52 52 A D > - 0 0 10 -2,-0.2 4,-2.8 1,-0.1 3,-0.5 -0.989 39.1-115.1-159.0 156.1 4.5 -1.6 1.5 53 53 A F H > S+ 0 0 0 -2,-0.3 4,-2.0 1,-0.2 5,-0.2 0.864 114.7 60.5 -61.6 -36.8 1.8 -0.6 3.9 54 54 A S H > S+ 0 0 49 -23,-0.6 4,-1.0 -22,-0.5 -1,-0.2 0.863 114.4 35.3 -59.2 -37.0 3.9 -1.8 6.8 55 55 A T H > S+ 0 0 48 -3,-0.5 4,-2.4 2,-0.2 3,-0.3 0.957 111.9 55.9 -81.3 -58.5 6.6 0.7 5.9 56 56 A I H X S+ 0 0 0 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.833 106.6 56.5 -42.5 -38.9 4.5 3.6 4.7 57 57 A R H X S+ 0 0 88 -4,-2.0 4,-2.4 -5,-0.2 5,-0.4 0.970 107.2 44.6 -59.7 -57.3 2.8 3.5 8.1 58 58 A E H X S+ 0 0 117 -4,-1.0 4,-2.1 -3,-0.3 -1,-0.2 0.864 116.6 48.6 -55.9 -37.8 6.1 3.9 10.1 59 59 A K H X>S+ 0 0 41 -4,-2.4 5,-3.3 2,-0.2 4,-1.0 0.889 109.5 52.4 -70.2 -40.6 7.1 6.6 7.7 60 60 A L H ><5S+ 0 0 14 -4,-2.9 3,-0.8 -5,-0.3 5,-0.2 0.972 116.9 36.3 -59.5 -57.8 3.8 8.4 7.9 61 61 A S H 3<5S+ 0 0 111 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.897 111.8 60.9 -63.2 -41.5 3.7 8.6 11.7 62 62 A S H 3<5S- 0 0 96 -4,-2.1 -1,-0.3 -5,-0.4 -2,-0.2 0.737 118.5-113.8 -58.5 -21.9 7.5 9.2 11.9 63 63 A G T <<5S+ 0 0 49 -4,-1.0 -3,-0.2 -3,-0.8 -2,-0.1 0.827 71.8 139.1 90.3 36.4 6.8 12.3 9.9 64 64 A Q < + 0 0 123 -5,-3.3 -4,-0.2 -8,-0.1 3,-0.1 0.798 55.7 74.8 -80.3 -30.9 8.6 11.3 6.6 65 65 A Y - 0 0 7 -6,-0.5 -1,-0.1 -5,-0.2 -53,-0.1 -0.754 59.9-170.7 -89.5 111.0 5.8 12.8 4.4 66 66 A P S S- 0 0 88 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 0.751 72.7 -5.2 -69.8 -24.9 6.1 16.6 4.4 67 67 A N S > S- 0 0 65 1,-0.1 4,-1.6 -3,-0.1 5,-0.1 -0.891 82.9 -86.0-154.8-177.4 2.7 16.9 2.6 68 68 A L H > S+ 0 0 32 -2,-0.3 4,-3.3 2,-0.2 5,-0.3 0.939 115.4 65.6 -64.9 -48.6 -0.1 14.9 1.0 69 69 A E H > S+ 0 0 141 1,-0.2 4,-3.1 2,-0.2 -1,-0.2 0.901 105.8 42.4 -37.3 -64.2 1.7 14.7 -2.4 70 70 A T H > S+ 0 0 31 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.955 113.2 51.6 -50.0 -60.5 4.5 12.6 -1.0 71 71 A F H X S+ 0 0 0 -4,-1.6 4,-2.0 1,-0.2 -1,-0.2 0.890 113.8 45.8 -44.2 -48.5 2.2 10.4 1.0 72 72 A A H X S+ 0 0 12 -4,-3.3 4,-2.5 1,-0.2 5,-0.5 0.940 104.3 60.8 -62.3 -49.3 0.2 9.8 -2.1 73 73 A L H X S+ 0 0 97 -4,-3.1 4,-1.3 -5,-0.3 -1,-0.2 0.873 108.9 45.0 -45.3 -44.0 3.2 9.1 -4.3 74 74 A D H X S+ 0 0 15 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.956 114.2 47.6 -66.8 -52.3 4.0 6.2 -2.1 75 75 A V H >X S+ 0 0 0 -4,-2.0 4,-1.4 1,-0.2 3,-1.2 0.973 111.7 47.8 -52.6 -64.5 0.5 4.8 -1.9 76 76 A R H 3X S+ 0 0 154 -4,-2.5 4,-1.4 1,-0.3 -1,-0.2 0.833 111.9 53.7 -46.9 -36.1 -0.2 5.0 -5.6 77 77 A L H 3X S+ 0 0 38 -4,-1.3 4,-2.5 -5,-0.5 5,-0.3 0.852 98.5 63.5 -69.0 -35.2 3.2 3.3 -6.1 78 78 A V H X S+ 0 0 11 -4,-2.5 4,-3.1 1,-0.2 3,-0.9 0.891 109.9 55.2 -43.8 -49.1 4.5 -2.2 -8.4 82 82 A C H 3X S+ 0 0 3 -4,-1.1 4,-2.4 -5,-0.3 -1,-0.2 0.941 103.2 53.1 -51.1 -54.7 1.9 -5.0 -7.8 83 83 A E H 3< S+ 0 0 47 -4,-1.9 -1,-0.3 -3,-0.2 -2,-0.2 0.772 116.5 43.2 -53.4 -26.3 0.3 -4.5 -11.2 84 84 A T H << S+ 0 0 80 -4,-1.4 -2,-0.2 -3,-0.9 -1,-0.2 0.952 123.8 30.1 -84.0 -61.4 3.8 -4.8 -12.6 85 85 A F H < S+ 0 0 63 -4,-3.1 -3,-0.2 -5,-0.1 -2,-0.2 0.964 123.2 49.7 -63.5 -54.4 5.3 -7.8 -10.7 86 86 A N S < S- 0 0 29 -4,-2.4 2,-0.4 -5,-0.3 5,-0.0 -0.314 82.2-129.4 -82.0 168.4 1.9 -9.5 -10.1 87 87 A E > - 0 0 99 1,-0.1 3,-1.8 -2,-0.1 7,-0.5 -0.952 20.6-118.7-124.0 142.1 -0.6 -10.3 -12.8 88 88 A D T 3 S+ 0 0 66 -2,-0.4 6,-0.3 5,-0.3 -1,-0.1 0.765 118.8 57.5 -45.0 -26.9 -4.4 -9.6 -12.9 89 89 A D T 3 S+ 0 0 109 4,-0.1 -1,-0.3 5,-0.1 2,-0.1 0.865 95.0 77.2 -73.9 -37.6 -4.7 -13.3 -13.2 90 90 A S S <> S- 0 0 45 -3,-1.8 4,-2.0 1,-0.1 5,-0.2 -0.382 93.5-112.7 -73.9 152.3 -2.8 -13.9 -9.9 91 91 A D H > S+ 0 0 130 1,-0.2 4,-2.0 2,-0.2 3,-0.1 0.950 117.4 45.2 -46.6 -64.5 -4.5 -13.4 -6.6 92 92 A I H > S+ 0 0 37 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.915 108.0 60.0 -46.9 -52.0 -2.3 -10.4 -5.6 93 93 A G H >> S+ 0 0 0 -6,-0.5 4,-1.0 1,-0.2 3,-0.9 0.920 106.0 44.9 -42.2 -62.3 -2.8 -8.9 -9.1 94 94 A R H >X S+ 0 0 154 -4,-2.0 4,-1.8 -7,-0.5 3,-1.1 0.907 106.5 61.5 -50.7 -47.1 -6.6 -8.7 -8.8 95 95 A A H 3X S+ 0 0 0 -4,-2.0 4,-2.7 1,-0.3 -1,-0.3 0.873 97.7 58.8 -48.1 -42.4 -6.2 -7.2 -5.3 96 96 A G H X S+ 0 0 0 -4,-2.7 4,-2.7 -72,-0.4 3,-1.1 0.986 109.7 54.7 -59.3 -63.4 -7.6 -1.4 -3.9 100 100 A R H 3X S+ 0 0 91 -4,-2.5 4,-1.7 1,-0.3 -1,-0.2 0.861 109.1 50.6 -37.2 -49.8 -6.5 1.1 -6.6 101 101 A K H 3X S+ 0 0 115 -4,-2.0 4,-2.2 -5,-0.2 -1,-0.3 0.895 114.0 44.7 -58.6 -42.0 -10.2 1.8 -7.3 102 102 A Y H S+ 0 0 99 -4,-1.7 4,-2.9 -5,-0.3 5,-0.5 0.994 114.2 46.5 -70.8 -66.8 -9.3 6.9 -5.5 105 105 A K H <5S+ 0 0 168 -4,-2.2 4,-0.4 1,-0.3 -2,-0.2 0.734 122.2 43.2 -48.7 -22.1 -13.0 6.8 -4.6 106 106 A K H X5S+ 0 0 48 -4,-2.9 4,-2.2 -5,-0.2 -1,-0.3 0.854 116.0 44.3 -91.6 -43.3 -11.8 7.2 -1.0 107 107 A W H X5S+ 0 0 50 -4,-2.7 4,-2.2 -5,-0.4 5,-0.4 0.964 111.5 52.0 -66.3 -53.9 -9.1 9.9 -1.6 108 108 A T H <5S+ 0 0 64 -4,-2.9 -1,-0.2 1,-0.2 -3,-0.2 0.872 114.2 45.5 -50.5 -40.9 -11.2 12.0 -3.9 109 109 A D H 4