==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN FIBRIL, IMMUNE SYSTEM 19-JAN-07 2E8D . COMPND 2 MOLECULE: BETA-2-MICROGLOBULIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.FUJIWARA . 88 4 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5638.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 76.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 42 47.7 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 22 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 115 0, 0.0 2,-0.2 0, 0.0 44,-0.0 0.000 360.0 360.0 360.0 32.4 16.4 5.8 -7.1 2 2 A N - 0 0 97 25,-0.0 2,-0.4 2,-0.0 24,-0.2 -0.580 360.0-157.3-177.4 108.1 13.2 6.9 -5.6 3 3 A F E -a 26 0A 38 22,-2.5 24,-1.2 21,-0.5 2,-0.3 -0.736 5.4-172.7 -94.7 139.7 9.8 5.1 -5.5 4 4 A L E -a 27 0A 102 -2,-0.4 2,-0.8 22,-0.2 24,-0.2 -0.656 5.8-166.1-132.5 77.6 6.5 7.0 -4.9 5 5 A N E +a 28 0A 11 22,-0.8 24,-3.4 -2,-0.3 2,-0.3 -0.510 21.7 172.9 -67.2 104.6 3.7 4.5 -4.5 6 6 A C E +a 29 0A 92 -2,-0.8 2,-0.2 22,-0.2 24,-0.2 -0.843 13.2 152.5-117.0 154.1 0.6 6.7 -4.9 7 7 A Y E -a 30 0A 30 22,-1.1 24,-1.6 -2,-0.3 2,-0.5 -0.607 13.0-179.0 179.1 115.2 -3.1 5.9 -5.1 8 8 A V E -a 31 0A 105 1,-0.4 24,-0.2 22,-0.2 3,-0.1 -0.853 61.0 -55.4-126.9 96.5 -6.2 7.9 -4.2 9 9 A S S S+ 0 0 56 22,-1.8 2,-0.5 -2,-0.5 -1,-0.4 0.258 101.4 70.0 56.7 168.6 -9.5 6.1 -4.7 10 10 A G + 0 0 45 23,-0.3 -1,-0.1 1,-0.1 -3,-0.0 -0.818 44.7 152.7 97.4-125.1 -10.5 4.6 -8.1 11 11 A F - 0 0 43 -2,-0.5 -1,-0.1 -3,-0.1 28,-0.0 0.583 48.2-100.2 63.6 137.4 -8.6 1.6 -9.4 12 12 A H - 0 0 151 1,-0.1 2,-1.1 25,-0.0 4,-0.2 -0.581 41.0 -92.8 -89.2 152.0 -10.2 -0.9 -11.7 13 13 A P S S+ 0 0 118 0, 0.0 2,-0.3 0, 0.0 24,-0.1 -0.483 88.5 79.9 -66.7 97.4 -11.7 -4.3 -10.6 14 14 A S S S- 0 0 71 -2,-1.1 24,-1.9 2,-0.1 2,-0.8 -0.967 87.3 -77.3-176.2-175.0 -8.8 -6.7 -11.1 15 15 A D E S+d 38 0B 76 -2,-0.3 2,-0.3 22,-0.1 24,-0.2 -0.785 81.8 91.5-109.2 88.0 -5.5 -8.0 -9.7 16 16 A I E +d 39 0B 98 22,-1.5 24,-1.3 -2,-0.8 -2,-0.1 -0.892 17.1 136.7-157.6-174.3 -2.8 -5.4 -10.3 17 17 A E E -d 40 0B 46 -2,-0.3 24,-0.2 22,-0.2 2,-0.2 -0.480 69.8 -55.5 163.5 -81.3 -1.0 -2.3 -9.0 18 18 A V E +d 41 0B 70 22,-1.9 24,-1.8 -2,-0.1 2,-0.4 -0.512 48.1 178.1 167.7 120.2 2.8 -2.2 -9.5 19 19 A D E +d 42 0B 111 22,-0.2 2,-0.3 -2,-0.2 24,-0.2 -0.997 4.4 172.2-138.0 141.5 5.6 -4.5 -8.6 20 20 A L E +d 43 0B 50 22,-1.5 24,-1.7 -2,-0.4 21,-0.0 -0.854 11.4 168.9-152.4 110.8 9.4 -4.4 -9.2 21 21 A L 0 0 106 -2,-0.3 -1,-0.1 22,-0.1 22,-0.1 0.753 360.0 360.0 -90.5 -29.0 11.9 -6.8 -7.7 22 22 A K 0 0 223 23,-0.0 -2,-0.1 0, 0.0 0, 0.0 0.924 360.0 360.0 65.4 360.0 14.8 -5.7 -9.9 23 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 24 23 B S 0 0 57 0, 0.0 -21,-0.5 0, 0.0 24,-0.2 0.000 360.0 360.0 360.0 99.3 16.0 4.3 -0.9 25 24 B N + 0 0 63 22,-0.9 -22,-2.5 -23,-0.2 2,-0.3 0.902 360.0 173.6 61.5 102.7 13.3 6.9 -0.8 26 25 B F E -ab 3 49A 0 22,-1.7 24,-2.0 -24,-0.2 2,-0.4 -0.986 14.8-174.2-144.9 130.6 9.8 5.3 -0.7 27 26 B L E -ab 4 50A 48 -24,-1.2 2,-0.9 -2,-0.3 -22,-0.8 -0.967 6.3-167.5-129.9 117.7 6.4 6.9 -0.2 28 27 B N E +ab 5 51A 4 22,-3.1 24,-2.2 -2,-0.4 2,-0.8 -0.776 13.6 177.5-105.5 88.7 3.2 4.8 0.1 29 28 B C E +ab 6 52A 63 -24,-3.4 -22,-1.1 -2,-0.9 2,-0.4 -0.817 11.1 157.3 -96.2 108.7 0.3 7.2 -0.3 30 29 B Y E +ab 7 53A 17 22,-2.0 24,-2.0 -2,-0.8 2,-0.3 -0.992 6.7 163.0-135.5 127.1 -3.0 5.4 -0.2 31 30 B V E +ab 8 54A 35 -24,-1.6 -22,-1.8 -2,-0.4 24,-0.2 -0.979 40.0 23.7-142.6 154.5 -6.4 6.9 0.7 32 31 B S - 0 0 42 22,-1.6 -23,-0.3 -2,-0.3 2,-0.2 0.229 64.8-124.6 74.4 158.2 -10.1 6.0 0.3 33 32 B G + 0 0 24 23,-0.2 -23,-0.3 -25,-0.1 2,-0.3 -0.526 24.3 174.1-124.5-168.0 -11.6 2.6 -0.1 34 33 B F - 0 0 44 -2,-0.2 3,-0.1 25,-0.1 24,-0.1 -0.973 42.6 -39.3-179.4-175.7 -13.9 0.6 -2.4 35 34 B H S S- 0 0 153 -2,-0.3 -1,-0.0 1,-0.1 22,-0.0 -0.069 82.1 -65.5 -59.7 165.7 -15.4 -2.8 -3.3 36 35 B P S S+ 0 0 92 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.056 70.7 139.4 -51.9 154.9 -13.2 -6.0 -3.1 37 36 B S - 0 0 12 -24,-0.1 24,-1.2 -3,-0.1 2,-0.6 -0.972 53.8 -88.9-178.4-179.0 -10.3 -6.4 -5.4 38 37 B D E -de 15 61B 75 -24,-1.9 -22,-1.5 -2,-0.3 2,-0.7 -0.856 36.4-178.6-118.3 96.8 -6.6 -7.5 -5.7 39 38 B I E -de 16 62B 7 22,-3.1 24,-2.3 -2,-0.6 2,-0.6 -0.843 3.6-175.5 -97.7 112.1 -4.1 -4.8 -4.9 40 39 B E E +de 17 63B 78 -24,-1.3 -22,-1.9 -2,-0.7 2,-0.5 -0.909 6.9 171.0-113.8 109.3 -0.5 -6.0 -5.3 41 40 B V E +de 18 64B 4 22,-1.6 24,-1.5 -2,-0.6 2,-0.4 -0.967 1.1 167.0-120.7 124.4 2.2 -3.5 -4.3 42 41 B D E -de 19 65B 33 -24,-1.8 -22,-1.5 -2,-0.5 2,-0.5 -0.969 11.0-173.3-140.4 121.8 5.9 -4.6 -4.2 43 42 B L E +de 20 66B 2 22,-3.0 24,-1.8 -2,-0.4 2,-0.3 -0.944 13.9 160.4-119.2 113.4 8.9 -2.2 -3.9 44 43 B L 0 0 61 -24,-1.7 22,-0.1 -2,-0.5 -2,-0.0 -0.734 360.0 360.0-134.1 85.7 12.4 -3.7 -4.1 45 44 B K 0 0 94 -2,-0.3 -1,-0.1 -44,-0.0 -24,-0.1 0.137 360.0 360.0-146.0 360.0 15.1 -1.2 -5.0 46 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 47 45 C S 0 0 89 0, 0.0 -22,-0.9 0, 0.0 21,-0.1 0.000 360.0 360.0 360.0 75.2 16.0 3.7 3.9 48 46 C N - 0 0 94 1,-0.2 -22,-1.7 -24,-0.2 2,-0.9 0.995 360.0-167.4 60.4 67.7 13.5 6.5 4.0 49 47 C F E +bc 26 72A 8 22,-1.4 24,-1.4 -24,-0.1 2,-0.6 -0.777 11.4 174.0 -92.0 104.8 10.4 4.5 4.8 50 48 C L E +bc 27 73A 60 -24,-2.0 -22,-3.1 -2,-0.9 2,-0.6 -0.887 2.1 169.0-116.2 101.8 7.3 6.7 4.3 51 49 C N E +bc 28 74A 0 22,-3.7 24,-0.6 -2,-0.6 2,-0.4 -0.945 3.5 172.7-116.7 115.8 4.0 4.9 4.6 52 50 C C E +bc 29 75A 26 -24,-2.2 -22,-2.0 -2,-0.6 2,-0.4 -0.983 3.7 174.8-126.7 127.9 0.8 7.0 4.8 53 51 C Y E -bc 30 76A 2 22,-2.5 24,-1.7 -2,-0.4 2,-0.5 -0.982 7.7-168.7-135.7 123.1 -2.7 5.6 4.8 54 52 C V E +bc 31 77A 68 -24,-2.0 -22,-1.6 -2,-0.4 24,-0.2 -0.937 58.7 1.9-115.1 130.6 -5.9 7.6 5.2 55 53 C S S S- 0 0 57 22,-1.8 2,-0.2 -2,-0.5 23,-0.1 0.580 71.4-135.8 70.3 133.7 -9.4 6.1 5.8 56 54 C G - 0 0 34 22,-0.2 2,-0.3 -25,-0.1 -23,-0.2 -0.513 13.1-156.5-113.0-177.3 -9.9 2.4 6.0 57 55 C F - 0 0 21 -2,-0.2 -22,-0.0 25,-0.1 -2,-0.0 -0.938 22.7-128.3-152.3 171.8 -12.3 -0.2 4.6 58 56 C H S S+ 0 0 144 -2,-0.3 -1,-0.1 -24,-0.1 -23,-0.1 0.907 88.6 34.8 -91.2 -55.1 -13.7 -3.7 5.2 59 57 C P S S+ 0 0 50 0, 0.0 -25,-0.1 0, 0.0 -2,-0.1 -0.010 78.5 78.1 -86.7-165.3 -13.2 -5.5 1.9 60 58 C S - 0 0 1 23,-0.1 24,-1.7 1,-0.1 2,-0.5 0.319 66.9-112.8 78.1 149.2 -10.4 -5.3 -0.7 61 59 C D E +ef 38 84B 45 -24,-1.2 -22,-3.1 22,-0.2 2,-0.5 -0.971 30.0 178.1-123.0 121.1 -7.0 -6.9 -0.6 62 60 C I E -ef 39 85B 9 22,-2.8 24,-1.8 -2,-0.5 2,-0.8 -0.938 6.2-174.5-126.9 110.6 -3.8 -4.8 -0.2 63 61 C E E -ef 40 86B 91 -24,-2.3 -22,-1.6 -2,-0.5 2,-0.5 -0.810 9.5-173.7-106.3 92.9 -0.4 -6.5 0.0 64 62 C V E +ef 41 87B 13 22,-2.2 24,-2.4 -2,-0.8 2,-0.4 -0.761 6.5 175.0 -90.3 123.4 2.2 -3.9 0.7 65 63 C D E +ef 42 88B 30 -24,-1.5 -22,-3.0 -2,-0.5 2,-0.4 -0.983 6.5 171.0-133.9 124.0 5.8 -5.2 0.6 66 64 C L E -ef 43 89B 1 22,-1.6 24,-1.6 -2,-0.4 25,-0.9 -0.973 30.0-147.9-136.0 120.0 8.9 -3.1 0.9 67 65 C L 0 0 53 -24,-1.8 -23,-0.1 -2,-0.4 -1,-0.1 0.717 360.0 360.0 -55.8 -20.7 12.5 -4.5 1.3 68 66 C K 0 0 12 -25,-0.3 -1,-0.3 22,-0.1 -19,-0.1 0.516 360.0 360.0-105.2 360.0 13.2 -1.4 3.4 69 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 70 67 D S 0 0 139 0, 0.0 -21,-0.0 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 -36.2 12.2 9.8 10.7 71 68 D N + 0 0 119 1,-0.2 -22,-1.4 -23,-0.1 2,-0.8 0.932 360.0 56.6 -62.2 -47.7 13.2 6.5 9.1 72 69 D F E +c 49 0A 109 -24,-0.1 2,-0.3 -22,-0.1 -1,-0.2 -0.787 62.6 160.6 -92.1 108.8 10.1 4.7 10.3 73 70 D L E +c 50 0A 61 -24,-1.4 -22,-3.7 -2,-0.8 2,-0.6 -0.676 6.0 160.4-130.1 78.8 7.0 6.5 9.1 74 71 D N E -c 51 0A 67 -2,-0.3 2,-0.4 -24,-0.2 -22,-0.2 -0.268 19.9-174.1 -92.6 47.2 3.9 4.2 9.2 75 72 D C E +c 52 0A 75 -24,-0.6 -22,-2.5 -2,-0.6 2,-0.4 -0.203 14.4 171.4 -46.4 97.0 1.5 7.1 9.2 76 73 D Y E +c 53 0A 83 -2,-0.4 2,-0.2 -24,-0.2 -22,-0.1 -0.963 17.9 166.0-121.0 131.5 -1.7 5.1 9.7 77 74 D V E +c 54 0A 77 -24,-1.7 -22,-1.8 -2,-0.4 -2,-0.0 -0.712 58.5 55.4-145.5 89.2 -5.2 6.5 10.4 78 75 D S - 0 0 56 -2,-0.2 -22,-0.2 -24,-0.2 3,-0.1 0.061 68.4-143.7-175.0 -53.6 -8.1 4.1 10.1 79 76 D G + 0 0 70 1,-0.3 2,-0.5 -24,-0.1 -3,-0.0 0.364 36.0 164.6 85.5 -6.1 -7.7 1.0 12.2 80 77 D F + 0 0 28 1,-0.2 -1,-0.3 0, 0.0 -23,-0.1 -0.244 6.3 171.2 -49.7 99.9 -9.3 -1.2 9.5 81 78 D H + 0 0 167 -2,-0.5 4,-0.3 -3,-0.1 -1,-0.2 0.797 50.9 76.4 -84.9 -32.6 -8.3 -4.6 10.7 82 79 D P S S+ 0 0 45 0, 0.0 3,-0.2 0, 0.0 -25,-0.1 0.113 73.7 47.7 -67.7-171.1 -10.5 -6.7 8.3 83 80 D S S S- 0 0 34 1,-0.2 2,-1.0 -22,-0.1 -22,-0.2 -0.032 108.8 -55.6 66.9-176.7 -9.7 -7.3 4.6 84 81 D D E S+f 61 0B 94 -24,-1.7 -22,-2.8 2,-0.0 2,-0.6 -0.675 73.7 156.2-100.6 79.6 -6.3 -8.4 3.3 85 82 D I E +f 62 0B 51 -2,-1.0 2,-0.3 -4,-0.3 -22,-0.2 -0.921 5.6 156.1-110.3 120.3 -4.0 -5.7 4.7 86 83 D E E -f 63 0B 138 -24,-1.8 -22,-2.2 -2,-0.6 2,-0.5 -0.984 22.5-162.0-146.3 131.5 -0.3 -6.5 5.2 87 84 D V E -f 64 0B 43 -2,-0.3 2,-1.4 -24,-0.1 -22,-0.2 -0.953 10.5-151.3-117.9 118.6 2.8 -4.3 5.4 88 85 D D E > -f 65 0B 35 -24,-2.4 -22,-1.6 -2,-0.5 2,-1.4 -0.668 13.3-165.6 -89.1 86.7 6.2 -5.8 4.9 89 86 D L E 3 S-f 66 0B 74 -2,-1.4 -22,-0.1 1,-0.3 -2,-0.0 -0.584 79.4 -26.5 -76.0 92.6 8.4 -3.4 6.9 90 87 D L T 3 0 0 113 -24,-1.6 -1,-0.3 -2,-1.4 -23,-0.2 0.833 360.0 360.0 70.7 33.4 11.9 -4.3 5.7 91 88 D K < 0 0 190 -25,-0.9 -3,-0.1 -3,-0.8 -24,-0.1 0.927 360.0 360.0 62.6 360.0 10.7 -7.8 4.8