==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN, TRANSFERASE 31-JAN-07 2EAO . COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7845.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 30.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 1 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 131 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.7 2.1 0.0 -1.2 2 2 A S + 0 0 125 3,-0.0 2,-0.3 0, 0.0 3,-0.1 -0.645 360.0 107.6-119.2 73.4 3.2 -2.8 -3.6 3 3 A S + 0 0 123 -2,-0.4 0, 0.0 1,-0.2 0, 0.0 -0.979 41.1 59.6-145.8 156.1 6.1 -4.5 -1.8 4 4 A G + 0 0 84 -2,-0.3 2,-0.5 1,-0.2 -1,-0.2 0.924 56.9 163.2 90.7 57.9 6.8 -7.8 0.0 5 5 A S - 0 0 129 -3,-0.1 2,-0.5 2,-0.0 -1,-0.2 -0.937 14.9-173.3-114.0 127.5 6.0 -10.5 -2.5 6 6 A S - 0 0 107 -2,-0.5 2,-0.1 1,-0.0 0, 0.0 -0.972 13.3-169.1-123.3 122.5 7.3 -14.1 -2.1 7 7 A G + 0 0 86 -2,-0.5 2,-0.3 2,-0.1 -1,-0.0 -0.249 69.1 59.3-101.8 45.4 6.9 -16.7 -4.7 8 8 A S S S- 0 0 104 -2,-0.1 3,-0.0 3,-0.0 0, 0.0 -0.904 77.4-117.0-170.0 139.3 8.0 -19.7 -2.6 9 9 A Q - 0 0 170 -2,-0.3 2,-1.2 1,-0.1 -2,-0.1 -0.342 48.0 -85.3 -77.7 160.6 6.8 -21.4 0.6 10 10 A P - 0 0 124 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 -0.516 53.8-161.6 -69.8 95.0 8.9 -21.6 3.8 11 11 A L - 0 0 145 -2,-1.2 2,-0.2 1,-0.1 -3,-0.0 -0.097 16.1-106.1 -70.1 174.3 11.1 -24.7 3.2 12 12 A L - 0 0 161 1,-0.1 2,-0.8 2,-0.0 -1,-0.1 -0.479 38.5 -85.4 -99.0 172.1 12.9 -26.6 5.9 13 13 A D + 0 0 141 1,-0.2 -1,-0.1 -2,-0.2 0, 0.0 -0.694 39.9 176.1 -82.4 111.5 16.6 -26.8 6.7 14 14 A R + 0 0 248 -2,-0.8 2,-0.6 2,-0.0 -1,-0.2 0.778 63.2 76.0 -83.7 -29.5 18.3 -29.4 4.6 15 15 A S - 0 0 97 1,-0.0 -1,-0.0 0, 0.0 -2,-0.0 -0.748 69.8-158.7 -88.9 122.1 21.8 -28.7 5.9 16 16 A I - 0 0 117 -2,-0.6 -2,-0.0 1,-0.1 3,-0.0 -0.857 11.3-132.0-104.9 133.1 22.4 -30.1 9.4 17 17 A P - 0 0 84 0, 0.0 2,-0.9 0, 0.0 3,-0.1 -0.017 34.9 -86.0 -69.7 179.0 25.2 -28.7 11.6 18 18 A D > + 0 0 120 1,-0.2 3,-0.7 3,-0.1 0, 0.0 -0.794 38.3 179.8 -95.3 101.7 27.8 -30.7 13.5 19 19 A F T 3 S+ 0 0 27 -2,-0.9 3,-0.5 1,-0.3 2,-0.3 0.775 81.1 62.3 -69.5 -26.5 26.3 -31.8 16.8 20 20 A T T 3 S+ 0 0 88 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.0 -0.202 85.2 80.0 -93.2 42.5 29.5 -33.6 17.7 21 21 A A S < S+ 0 0 73 -3,-0.7 -1,-0.2 -2,-0.3 2,-0.2 0.002 75.1 86.7-135.3 27.5 31.6 -30.3 17.6 22 22 A F + 0 0 43 -3,-0.5 3,-0.1 1,-0.1 -3,-0.0 -0.455 31.8 163.9-115.7-170.8 30.8 -28.9 21.0 23 23 A T + 0 0 96 1,-0.5 26,-0.6 -2,-0.2 2,-0.3 0.170 66.6 34.6-174.5 -40.8 32.1 -29.1 24.5 24 24 A T B > S-A 48 0A 45 24,-0.2 4,-3.3 1,-0.1 -1,-0.5 -0.911 72.8-118.2-132.1 159.0 30.9 -26.2 26.7 25 25 A V H > S+ 0 0 0 22,-1.0 4,-3.0 -2,-0.3 5,-0.4 0.929 114.8 54.8 -59.9 -47.8 27.7 -24.2 26.9 26 26 A D H > S+ 0 0 50 21,-0.3 4,-1.0 1,-0.2 -1,-0.2 0.863 115.4 40.6 -54.3 -38.2 29.5 -21.0 26.0 27 27 A D H > S+ 0 0 97 2,-0.2 4,-1.0 3,-0.1 -2,-0.2 0.941 115.3 49.0 -76.3 -51.0 30.7 -22.7 22.9 28 28 A W H >< S+ 0 0 0 -4,-3.3 3,-1.6 1,-0.2 4,-0.5 0.951 112.9 47.1 -53.4 -55.6 27.6 -24.5 22.0 29 29 A L H ><>S+ 0 0 0 -4,-3.0 5,-2.3 1,-0.3 3,-1.2 0.858 109.1 55.7 -55.7 -36.8 25.4 -21.4 22.4 30 30 A S H 3<5S+ 0 0 75 -4,-1.0 -1,-0.3 -5,-0.4 3,-0.2 0.692 102.8 56.8 -69.8 -18.3 27.9 -19.5 20.3 31 31 A A T <<5S+ 0 0 63 -3,-1.6 -1,-0.3 -4,-1.0 -2,-0.2 0.515 112.5 40.2 -89.3 -6.8 27.4 -22.1 17.6 32 32 A I T < 5S- 0 0 13 -3,-1.2 -2,-0.2 -4,-0.5 -1,-0.2 0.202 113.3-110.9-123.4 11.2 23.7 -21.4 17.5 33 33 A K T 5S+ 0 0 178 -3,-0.2 3,-0.3 -4,-0.2 -3,-0.2 0.634 94.9 109.5 67.2 12.7 23.8 -17.6 17.8 34 34 A M > < + 0 0 9 -5,-2.3 3,-2.2 -6,-0.2 -4,-0.3 0.059 28.8 120.3-105.1 22.8 22.3 -18.1 21.3 35 35 A V G > + 0 0 32 -6,-0.7 3,-2.3 1,-0.3 4,-0.2 0.733 56.9 81.7 -58.2 -21.6 25.5 -17.2 23.1 36 36 A Q G 3 S+ 0 0 100 -3,-0.3 3,-0.4 1,-0.3 -1,-0.3 0.767 89.8 52.6 -55.5 -25.5 23.4 -14.4 24.7 37 37 A Y G <> S+ 0 0 33 -3,-2.2 4,-1.4 1,-0.2 -1,-0.3 -0.000 74.6 109.8-100.2 27.5 22.2 -17.1 27.1 38 38 A R H <> S+ 0 0 120 -3,-2.3 4,-1.0 1,-0.2 -1,-0.2 0.765 84.0 42.4 -72.2 -25.7 25.7 -18.1 28.0 39 39 A D H > S+ 0 0 108 -3,-0.4 4,-2.4 -4,-0.2 5,-0.4 0.740 105.2 63.8 -90.4 -27.5 25.3 -16.6 31.5 40 40 A S H > S+ 0 0 29 1,-0.2 4,-0.9 2,-0.2 6,-0.2 0.907 111.7 35.9 -62.8 -43.2 21.8 -18.0 31.9 41 41 A F H X>S+ 0 0 0 -4,-1.4 5,-1.7 2,-0.2 4,-0.9 0.889 116.2 54.6 -77.4 -41.9 23.0 -21.6 31.8 42 42 A L H ><5S+ 0 0 59 -4,-1.0 3,-1.5 1,-0.2 -2,-0.2 0.972 114.4 38.2 -55.4 -60.5 26.3 -20.9 33.6 43 43 A T H 3<5S+ 0 0 125 -4,-2.4 -1,-0.2 1,-0.3 -2,-0.2 0.812 110.2 63.5 -61.8 -30.4 24.7 -19.3 36.7 44 44 A A H 3<5S- 0 0 45 -4,-0.9 -1,-0.3 -5,-0.4 -2,-0.2 0.716 122.3-106.8 -66.9 -20.4 21.9 -21.8 36.5 45 45 A G T <<5S+ 0 0 45 -3,-1.5 2,-1.5 -4,-0.9 3,-0.3 0.160 85.7 121.5 113.8 -17.0 24.5 -24.5 37.1 46 46 A F < + 0 0 35 -5,-1.7 -1,-0.2 1,-0.2 -2,-0.2 -0.630 19.4 144.3 -83.1 88.3 24.6 -26.0 33.6 47 47 A T + 0 0 68 -2,-1.5 -22,-1.0 1,-0.1 2,-0.4 0.702 61.1 55.6 -95.5 -25.0 28.3 -25.5 32.8 48 48 A S B >> S-A 24 0A 33 -3,-0.3 3,-2.0 -24,-0.2 4,-1.0 -0.910 75.9-136.3-114.0 137.9 28.7 -28.7 30.8 49 49 A L H 3> S+ 0 0 5 -26,-0.6 4,-2.6 -2,-0.4 5,-0.2 0.798 101.4 75.4 -58.1 -28.8 26.6 -29.7 27.8 50 50 A Q H 34 S+ 0 0 115 1,-0.3 -1,-0.3 -27,-0.3 4,-0.2 0.789 100.9 42.2 -54.3 -28.2 26.4 -33.2 29.4 51 51 A L H <4 S+ 0 0 77 -3,-2.0 3,-0.5 2,-0.1 -1,-0.3 0.757 112.0 53.0 -89.4 -28.8 23.9 -31.7 31.8 52 52 A V H >< S+ 0 0 0 -4,-1.0 3,-1.7 1,-0.2 -2,-0.2 0.760 96.1 68.5 -76.8 -25.9 22.1 -29.7 29.2 53 53 A T T 3< S+ 0 0 2 -4,-2.6 -1,-0.2 1,-0.3 29,-0.2 0.766 100.5 49.2 -63.9 -25.2 21.6 -32.8 27.0 54 54 A Q T 3 S+ 0 0 137 -3,-0.5 -1,-0.3 -4,-0.2 -2,-0.1 0.011 98.0 98.5-102.7 26.3 19.2 -34.1 29.7 55 55 A M < - 0 0 52 -3,-1.7 2,-0.3 3,-0.0 -3,-0.1 -0.381 54.9-152.9-103.0-176.7 17.2 -30.8 29.9 56 56 A T >> - 0 0 63 -2,-0.1 4,-1.1 1,-0.0 3,-0.8 -0.919 40.4 -84.4-150.0 173.8 14.0 -29.7 28.3 57 57 A S H 3> S+ 0 0 44 -2,-0.3 4,-1.3 1,-0.3 3,-0.3 0.821 124.5 61.6 -52.1 -32.7 12.0 -26.6 27.2 58 58 A E H 3> S+ 0 0 136 1,-0.2 4,-1.4 2,-0.2 3,-0.5 0.920 96.7 56.3 -61.1 -45.5 10.9 -26.2 30.8 59 59 A D H <> S+ 0 0 16 -3,-0.8 4,-1.7 1,-0.2 -1,-0.2 0.829 102.5 58.2 -56.1 -33.0 14.5 -25.8 31.9 60 60 A L H X>S+ 0 0 0 -4,-1.1 4,-1.4 -3,-0.3 5,-0.8 0.903 107.3 44.8 -64.7 -42.4 14.8 -22.9 29.5 61 61 A L H <5S+ 0 0 94 -4,-1.3 -1,-0.2 -3,-0.5 -2,-0.2 0.694 108.7 60.2 -74.7 -18.9 11.9 -21.0 31.1 62 62 A R H <5S+ 0 0 198 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.875 109.4 39.8 -75.6 -39.3 13.4 -21.8 34.5 63 63 A I H <5S- 0 0 35 -4,-1.7 -2,-0.2 -5,-0.1 -1,-0.2 0.769 131.4 -88.9 -80.3 -27.6 16.7 -20.0 33.8 64 64 A G T <5S+ 0 0 40 -4,-1.4 2,-0.4 1,-0.3 -3,-0.2 -0.045 84.2 130.3 146.3 -37.0 14.9 -17.2 32.0 65 65 A I < + 0 0 1 -5,-0.8 -1,-0.3 1,-0.2 -2,-0.1 -0.282 17.7 152.8 -51.6 103.2 14.6 -18.2 28.4 66 66 A T + 0 0 91 -2,-0.4 2,-0.8 -3,-0.1 -1,-0.2 0.020 28.1 118.0-124.1 25.1 11.0 -17.6 27.7 67 67 A L >> - 0 0 80 1,-0.2 4,-3.2 -7,-0.1 3,-1.5 -0.842 47.8-162.3 -99.8 107.9 11.2 -16.9 23.9 68 68 A A H 3> S+ 0 0 70 -2,-0.8 4,-1.0 1,-0.3 -1,-0.2 0.835 95.5 53.1 -54.5 -34.2 9.2 -19.4 21.9 69 69 A G H 34 S+ 0 0 56 2,-0.2 -1,-0.3 1,-0.2 4,-0.1 0.704 114.4 41.5 -75.3 -19.6 11.2 -18.3 18.9 70 70 A H H X> S+ 0 0 51 -3,-1.5 4,-1.6 2,-0.1 3,-1.6 0.841 108.6 55.8 -93.2 -42.2 14.4 -18.9 20.7 71 71 A Q H 3X S+ 0 0 24 -4,-3.2 4,-2.3 1,-0.3 5,-0.4 0.785 95.6 69.8 -61.2 -27.2 13.6 -22.2 22.5 72 72 A K H 3X S+ 0 0 146 -4,-1.0 4,-0.6 -5,-0.3 -1,-0.3 0.787 104.8 41.1 -61.4 -27.4 12.8 -23.6 19.1 73 73 A K H <> S+ 0 0 103 -3,-1.6 4,-1.2 2,-0.1 -2,-0.2 0.898 114.5 49.0 -86.2 -47.4 16.5 -23.5 18.3 74 74 A I H >X S+ 0 0 0 -4,-1.6 4,-3.1 1,-0.2 3,-1.5 0.974 114.3 43.8 -56.1 -61.0 17.8 -24.7 21.7 75 75 A L H 3X S+ 0 0 47 -4,-2.3 4,-2.6 1,-0.3 5,-0.3 0.875 108.9 59.6 -52.9 -40.2 15.6 -27.7 21.9 76 76 A N H 3X S+ 0 0 115 -4,-0.6 4,-0.6 -5,-0.4 -1,-0.3 0.797 114.2 37.4 -59.7 -28.6 16.3 -28.5 18.3 77 77 A S H