==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 31-JAN-07 2EAQ . COMPND 2 MOLECULE: LIM DOMAIN ONLY PROTEIN 7; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.XIE,S.KISHISHITA,K.MURAYAMA,C.TAKEMOTO,M.SHIROZU, . 89 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5732.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 70.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 29 32.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1037 A Q 0 0 210 0, 0.0 88,-1.4 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -13.0 46.0 2.4 -7.4 2 1038 A F E -A 88 0A 84 86,-0.2 2,-0.4 87,-0.1 86,-0.2 -0.760 360.0-154.7-101.2 151.2 44.8 4.9 -4.7 3 1039 A S E -A 87 0A 72 84,-2.4 84,-2.9 -2,-0.3 2,-0.4 -0.970 8.6-140.5-122.7 137.1 47.0 7.4 -3.0 4 1040 A D E +A 86 0A 94 -2,-0.4 2,-0.3 82,-0.2 82,-0.2 -0.779 33.2 164.2 -91.7 140.7 46.5 8.9 0.5 5 1041 A M E -A 85 0A 61 80,-2.5 80,-2.6 -2,-0.4 2,-0.4 -0.967 34.5-126.3-154.2 165.2 47.3 12.6 0.8 6 1042 A R E -A 84 0A 177 -2,-0.3 2,-0.5 78,-0.2 78,-0.2 -0.958 22.0-165.6-116.9 131.6 46.8 15.6 3.0 7 1043 A I E -A 83 0A 14 76,-2.8 76,-3.0 -2,-0.4 2,-0.5 -0.983 7.4-151.4-124.7 124.4 45.4 18.8 1.6 8 1044 A S E +A 82 0A 63 -2,-0.5 2,-0.4 74,-0.2 74,-0.2 -0.832 15.8 179.5 -98.6 126.5 45.5 22.1 3.4 9 1045 A I E -A 81 0A 0 72,-2.4 72,-2.7 -2,-0.5 2,-0.3 -0.977 5.5-179.7-125.8 136.7 42.7 24.7 2.7 10 1046 A N E +A 80 0A 80 -2,-0.4 2,-0.3 70,-0.2 70,-0.2 -0.999 10.3 155.6-143.2 140.6 42.6 28.1 4.4 11 1047 A Q - 0 0 21 68,-2.4 3,-0.1 -2,-0.3 8,-0.1 -0.910 54.7 -55.6-151.5 176.1 40.3 31.1 4.3 12 1048 A T > - 0 0 90 -2,-0.3 3,-1.5 1,-0.1 67,-0.1 -0.325 64.1-104.6 -59.3 135.0 39.4 34.0 6.6 13 1049 A P T 3 S+ 0 0 88 0, 0.0 65,-0.2 0, 0.0 64,-0.2 -0.371 103.7 11.5 -61.3 139.3 38.2 32.9 10.0 14 1050 A G T 3 S+ 0 0 55 63,-1.1 63,-0.2 62,-0.9 64,-0.1 0.693 88.9 169.5 66.4 22.4 34.4 33.3 10.3 15 1051 A K < - 0 0 75 -3,-1.5 -1,-0.2 61,-0.5 64,-0.1 -0.322 40.1-134.0 -64.0 148.1 33.9 33.9 6.6 16 1052 A S S S+ 0 0 118 2,-0.1 2,-0.3 -2,-0.0 -1,-0.1 0.601 86.4 73.0 -78.9 -12.6 30.4 33.9 5.3 17 1053 A L S S- 0 0 105 1,-0.1 -2,-0.1 59,-0.1 2,-0.0 -0.755 82.0-123.8-100.0 148.6 31.4 31.8 2.3 18 1054 A D - 0 0 80 -2,-0.3 -1,-0.1 1,-0.1 -2,-0.1 -0.222 38.6 -89.9 -80.3 179.3 32.2 28.1 2.5 19 1055 A F - 0 0 5 2,-0.1 22,-2.2 21,-0.1 23,-0.2 0.617 63.9 -99.7 -70.8 -10.7 35.5 26.6 1.3 20 1056 A G S S+ 0 0 0 1,-0.4 16,-3.0 20,-0.2 2,-0.3 0.585 87.9 90.2 106.2 10.2 34.3 25.9 -2.2 21 1057 A F E -B 35 0A 19 14,-0.2 -1,-0.4 20,-0.1 2,-0.3 -0.936 53.3-150.4-136.4 158.6 33.4 22.2 -2.3 22 1058 A T E -B 34 0A 72 12,-1.6 11,-3.0 -2,-0.3 12,-1.2 -0.895 22.6-120.4-120.4 159.1 30.3 20.1 -1.6 23 1059 A I E -B 32 0A 38 -2,-0.3 2,-0.7 9,-0.3 9,-0.2 -0.796 6.7-146.4-106.7 139.4 30.2 16.5 -0.3 24 1060 A K E -B 31 0A 89 7,-3.2 7,-2.6 -2,-0.4 2,-0.7 -0.940 17.0-148.3 -98.8 113.1 28.8 13.4 -1.9 25 1061 A W E +B 30 0A 112 -2,-0.7 5,-0.2 5,-0.2 7,-0.0 -0.774 31.7 158.2 -81.6 119.0 27.4 11.1 0.8 26 1062 A D E > -B 29 0A 90 3,-2.5 3,-2.3 -2,-0.7 -1,-0.1 -0.524 48.5-110.8-140.7 71.1 27.9 7.6 -0.5 27 1063 A I T 3 S+ 0 0 95 1,-0.4 3,-0.1 35,-0.0 -2,-0.0 -0.086 102.5 31.9 -48.9 140.3 27.8 5.6 2.8 28 1064 A P T 3 S+ 0 0 99 0, 0.0 -1,-0.4 0, 0.0 34,-0.3 -0.974 130.5 39.0 -77.7 6.5 29.9 4.2 4.1 29 1065 A G E < -B 26 0A 4 -3,-2.3 -3,-2.5 32,-0.1 2,-0.4 -0.677 63.3-144.8-112.3 166.8 32.1 6.9 2.6 30 1066 A I E -B 25 0A 0 22,-0.5 22,-2.6 -2,-0.2 2,-0.3 -0.978 24.0-176.8-122.5 144.3 31.9 10.6 1.9 31 1067 A F E -BC 24 51A 37 -7,-2.6 -7,-3.2 -2,-0.4 2,-0.6 -0.859 36.8 -90.7-136.6 162.2 33.5 12.1 -1.3 32 1068 A V E -B 23 0A 1 18,-2.3 17,-3.0 15,-0.3 -9,-0.3 -0.698 37.6-177.8 -78.0 120.5 34.1 15.4 -2.9 33 1069 A A E - 0 0 42 -11,-3.0 2,-0.3 -2,-0.6 -10,-0.2 0.817 64.0 -2.6 -87.4 -34.8 31.1 16.1 -5.1 34 1070 A S E -B 22 0A 42 -12,-1.2 -12,-1.6 13,-0.1 2,-0.4 -0.988 51.4-155.5-156.8 153.2 32.1 19.4 -6.6 35 1071 A V E -B 21 0A 27 -2,-0.3 2,-0.2 -14,-0.2 -14,-0.2 -0.958 27.8-133.4-136.3 117.1 35.0 22.0 -6.4 36 1072 A E > - 0 0 106 -16,-3.0 3,-1.8 -2,-0.4 6,-0.5 -0.468 18.8-112.4 -80.7 132.0 34.1 25.5 -7.4 37 1073 A A T 3 S+ 0 0 96 1,-0.2 -1,-0.1 -2,-0.2 4,-0.1 -0.369 102.7 22.0 -57.6 139.8 36.2 27.6 -9.7 38 1074 A G T 3 S+ 0 0 84 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.357 98.9 122.1 84.5 -2.4 37.8 30.5 -7.9 39 1075 A S S <> S- 0 0 13 -3,-1.8 4,-2.5 -19,-0.2 -1,-0.3 -0.412 76.7-111.6 -93.4 166.0 37.5 29.0 -4.4 40 1076 A P H > S+ 0 0 28 0, 0.0 4,-2.8 0, 0.0 -20,-0.2 0.893 119.1 56.1 -59.4 -37.3 40.0 28.1 -1.7 41 1077 A A H 4>S+ 0 0 0 -22,-2.2 5,-2.2 2,-0.2 4,-0.5 0.910 108.8 45.8 -66.1 -34.5 39.3 24.4 -2.4 42 1078 A E H >45S+ 0 0 95 -6,-0.5 3,-1.2 -23,-0.2 -1,-0.2 0.935 111.1 52.6 -71.6 -42.9 40.2 24.8 -6.0 43 1079 A F H 3<5S+ 0 0 175 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.2 0.919 110.5 48.7 -56.5 -43.4 43.3 26.9 -5.1 44 1080 A S T 3<5S- 0 0 28 -4,-2.8 -1,-0.3 -5,-0.2 -2,-0.2 0.580 114.6-120.3 -76.4 -6.8 44.3 24.0 -2.8 45 1081 A Q T < 5 + 0 0 136 -3,-1.2 2,-0.2 -4,-0.5 -3,-0.2 0.814 49.7 163.9 69.9 36.7 43.7 21.4 -5.5 46 1082 A L < - 0 0 1 -5,-2.2 2,-0.4 -38,-0.0 -1,-0.2 -0.574 26.8-146.6 -71.5 146.1 41.1 19.3 -3.9 47 1083 A Q > - 0 0 89 -2,-0.2 3,-2.0 -13,-0.0 -15,-0.3 -0.933 15.9 -98.3-126.5 148.1 39.5 17.2 -6.6 48 1084 A V T 3 S+ 0 0 73 -2,-0.4 -15,-0.2 1,-0.3 3,-0.1 -0.295 109.9 24.7 -56.2 140.4 36.0 15.8 -7.3 49 1085 A D T 3 S+ 0 0 104 -17,-3.0 -1,-0.3 1,-0.3 39,-0.3 0.300 82.2 141.1 80.6 -6.1 35.8 12.1 -6.3 50 1086 A D < - 0 0 3 -3,-2.0 -18,-2.3 37,-0.1 2,-0.4 -0.494 55.4-124.9 -60.4 135.1 38.5 12.4 -3.7 51 1087 A E E -CD 31 86A 35 35,-3.1 35,-2.3 -20,-0.2 2,-0.6 -0.751 19.0-134.7 -84.0 130.3 37.4 10.3 -0.7 52 1088 A I E + D 0 85A 3 -22,-2.6 -22,-0.5 -2,-0.4 33,-0.2 -0.761 31.6 168.2 -91.1 118.9 37.3 12.3 2.5 53 1089 A I E - 0 0 28 31,-3.0 7,-2.3 -2,-0.6 2,-0.3 0.841 62.5 -15.7 -97.0 -39.0 38.9 10.4 5.4 54 1090 A A E -ED 59 84A 10 30,-1.7 30,-2.5 5,-0.3 2,-0.4 -0.987 48.1-147.4-160.2 155.1 39.3 13.1 8.0 55 1091 A I E > S-ED 58 83A 1 3,-2.4 3,-2.9 -2,-0.3 28,-0.2 -0.996 71.1 -42.4-127.6 133.1 39.3 16.9 8.5 56 1092 A N T 3 S- 0 0 61 26,-2.7 25,-0.1 -2,-0.4 28,-0.1 -0.253 128.4 -18.0 49.2-124.9 41.5 18.5 11.2 57 1093 A N T 3 S+ 0 0 172 -3,-0.1 2,-0.6 14,-0.1 -1,-0.3 0.185 118.1 96.0 -97.5 25.2 41.2 16.1 14.2 58 1094 A T E < -E 55 0A 42 -3,-2.9 -3,-2.4 10,-0.1 2,-0.4 -0.927 55.4-160.7-122.7 112.9 38.0 14.4 13.1 59 1095 A K E -E 54 0A 156 -2,-0.6 -5,-0.3 -5,-0.2 2,-0.1 -0.744 29.9-117.9 -86.2 131.5 38.0 11.1 11.3 60 1096 A F + 0 0 18 -7,-2.3 2,-0.4 -2,-0.4 5,-0.1 -0.433 36.0 175.4 -67.5 140.4 34.8 10.4 9.4 61 1097 A S > - 0 0 47 3,-0.3 3,-2.0 -2,-0.1 7,-0.2 -0.983 38.5-132.4-144.3 142.2 32.7 7.5 10.4 62 1098 A Y T 3 S+ 0 0 137 -2,-0.4 3,-0.4 -34,-0.3 -1,-0.1 0.697 105.7 66.5 -59.4 -21.7 29.3 6.5 9.1 63 1099 A N T 3 S+ 0 0 119 1,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.570 107.6 35.1 -78.6 -15.1 28.3 6.0 12.8 64 1100 A D <> + 0 0 55 -3,-2.0 4,-1.4 1,-0.1 -3,-0.3 -0.424 54.4 149.9-144.1 78.6 28.6 9.7 13.7 65 1101 A S H > S+ 0 0 53 -3,-0.4 4,-2.5 1,-0.2 5,-0.2 0.717 75.2 66.8 -71.1 -23.6 27.6 12.1 11.0 66 1102 A K H > S+ 0 0 120 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.963 103.0 43.2 -64.7 -52.2 26.6 14.6 13.7 67 1103 A E H > S+ 0 0 116 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.882 112.8 56.3 -60.4 -33.1 30.2 15.1 14.9 68 1104 A W H X S+ 0 0 3 -4,-1.4 4,-2.6 2,-0.2 -2,-0.2 0.965 107.5 45.9 -62.2 -49.3 31.2 15.3 11.3 69 1105 A E H X S+ 0 0 113 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.902 111.7 52.1 -61.7 -38.9 28.9 18.1 10.6 70 1106 A E H X S+ 0 0 111 -4,-2.4 4,-2.2 2,-0.2 -1,-0.2 0.900 108.8 51.1 -65.0 -38.3 30.0 19.9 13.7 71 1107 A A H X S+ 0 0 13 -4,-2.5 4,-2.3 2,-0.2 -2,-0.2 0.906 108.9 51.4 -65.9 -35.8 33.6 19.5 12.7 72 1108 A M H X S+ 0 0 37 -4,-2.6 4,-1.6 2,-0.2 -2,-0.2 0.938 111.0 47.4 -65.5 -42.1 32.8 21.0 9.2 73 1109 A A H X S+ 0 0 65 -4,-2.3 4,-1.6 1,-0.2 -1,-0.2 0.902 110.9 52.3 -67.6 -38.0 31.0 24.0 10.8 74 1110 A K H X S+ 0 0 147 -4,-2.2 4,-2.4 1,-0.2 5,-0.3 0.907 105.0 54.3 -64.0 -39.8 33.9 24.5 13.2 75 1111 A A H X>S+ 0 0 2 -4,-2.3 4,-2.4 1,-0.2 5,-0.5 0.863 106.1 54.1 -64.2 -32.0 36.5 24.5 10.3 76 1112 A Q H <5S+ 0 0 55 -4,-1.6 -62,-0.9 2,-0.2 -61,-0.5 0.866 108.5 49.9 -67.3 -36.5 34.3 27.3 8.7 77 1113 A E H <5S+ 0 0 145 -4,-1.6 -63,-1.1 1,-0.2 -2,-0.2 0.940 118.8 35.5 -66.8 -42.2 34.7 29.2 12.0 78 1114 A T H <5S- 0 0 55 -4,-2.4 -2,-0.2 -65,-0.2 -1,-0.2 0.753 98.4-134.1 -83.7 -25.2 38.5 28.8 12.2 79 1115 A G T <5 + 0 0 0 -4,-2.4 -68,-2.4 -5,-0.3 2,-0.5 0.567 69.4 111.6 82.1 5.9 39.1 29.0 8.4 80 1116 A H E < +A 10 0A 98 -5,-0.5 2,-0.4 -70,-0.2 -1,-0.2 -0.960 36.8 172.2-120.8 127.1 41.5 26.1 8.5 81 1117 A L E -A 9 0A 0 -72,-2.7 -72,-2.4 -2,-0.5 2,-0.7 -0.887 7.9-176.9-135.4 106.2 40.8 22.8 7.0 82 1118 A V E -A 8 0A 51 -2,-0.4 -26,-2.7 -74,-0.2 2,-0.4 -0.915 21.2-164.5-103.0 109.5 43.5 20.1 6.8 83 1119 A M E -AD 7 55A 0 -76,-3.0 -76,-2.8 -2,-0.7 2,-0.6 -0.819 18.4-152.9-104.3 129.1 41.9 17.2 4.9 84 1120 A D E +AD 6 54A 44 -30,-2.5 -31,-3.0 -2,-0.4 -30,-1.7 -0.908 32.2 172.0 -95.8 120.1 43.1 13.6 4.7 85 1121 A V E -AD 5 52A 1 -80,-2.6 -80,-2.5 -2,-0.6 2,-0.5 -0.875 32.9-138.4-126.2 163.5 41.8 12.2 1.4 86 1122 A R E -AD 4 51A 59 -35,-2.3 -35,-3.1 -2,-0.3 2,-0.5 -0.991 19.8-162.0-122.0 122.7 42.2 9.1 -0.7 87 1123 A R E -A 3 0A 59 -84,-2.9 -84,-2.4 -2,-0.5 2,-0.4 -0.914 9.6-144.3-110.3 123.1 42.5 9.7 -4.5 88 1124 A Y E A 2 0A 121 -2,-0.5 -86,-0.2 -39,-0.3 -2,-0.0 -0.699 360.0 360.0 -92.9 139.3 41.8 6.9 -6.8 89 1125 A G 0 0 90 -88,-1.4 -1,-0.2 -2,-0.4 -87,-0.1 0.875 360.0 360.0 -93.8 360.0 43.9 6.5 -9.9