==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=26-JAN-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 08-FEB-07 2EBI . COMPND 2 MOLECULE: DNA BINDING PROTEIN GT-1; . SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; . AUTHOR T.NAGATA,K.NOTO,E.NIYADA,Y.IKEDA,Y.YAMAMOTO,S.UESUGI,J.MURAT . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8118.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 62.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 48.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 81 A K 0 0 204 0, 0.0 2,-1.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-176.7 10.5 -2.0 23.2 2 82 A K - 0 0 196 4,-0.0 4,-0.1 2,-0.0 2,-0.1 -0.739 360.0-167.0 -88.2 103.0 11.9 -0.5 19.9 3 83 A R - 0 0 165 -2,-1.0 0, 0.0 2,-0.2 0, 0.0 -0.280 33.5 -98.9 -82.6 171.8 14.3 -3.1 18.5 4 84 A A S S+ 0 0 91 -2,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.983 103.6 71.2 -52.9 -72.6 16.7 -2.6 15.6 5 85 A E + 0 0 142 1,-0.0 2,-0.3 -3,-0.0 -2,-0.2 -0.220 69.1 152.6 -50.5 128.5 14.7 -4.1 12.8 6 86 A T - 0 0 78 -4,-0.1 2,-0.3 0, 0.0 -2,-0.0 -0.878 50.9 -49.8-149.0 179.4 11.8 -1.7 12.0 7 87 A W - 0 0 53 -2,-0.3 2,-0.3 4,-0.1 3,-0.0 -0.400 59.7-167.5 -60.5 119.2 9.5 -0.6 9.2 8 88 A V > - 0 0 52 -2,-0.3 4,-2.4 1,-0.1 5,-0.2 -0.772 35.9-105.6-110.8 156.5 11.7 0.3 6.2 9 89 A Q H > S+ 0 0 120 -2,-0.3 4,-2.7 1,-0.2 5,-0.4 0.891 119.7 57.2 -41.7 -51.9 10.8 2.1 2.9 10 90 A D H > S+ 0 0 90 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.940 115.9 33.7 -45.7 -61.3 10.8 -1.2 1.1 11 91 A E H > S+ 0 0 10 2,-0.2 4,-3.0 -3,-0.2 3,-0.3 0.990 118.4 51.3 -60.1 -64.7 8.2 -2.7 3.3 12 92 A T H X S+ 0 0 34 -4,-2.4 4,-1.9 1,-0.3 5,-0.2 0.898 112.3 46.0 -36.9 -65.8 6.1 0.4 4.0 13 93 A R H X S+ 0 0 136 -4,-2.7 4,-1.8 -5,-0.2 -1,-0.3 0.890 115.5 49.0 -47.2 -46.0 5.8 1.3 0.3 14 94 A S H >X S+ 0 0 23 -4,-1.9 4,-2.2 -5,-0.4 3,-0.7 0.978 103.2 57.9 -59.6 -59.8 4.9 -2.4 -0.3 15 95 A L H 3X S+ 0 0 0 -4,-3.0 4,-1.7 1,-0.3 -1,-0.2 0.861 110.3 45.7 -37.2 -49.9 2.3 -2.6 2.4 16 96 A I H 3X S+ 0 0 51 -4,-1.9 4,-3.0 -5,-0.3 5,-0.4 0.884 108.9 56.8 -64.2 -39.6 0.4 0.3 0.7 17 97 A M H X S+ 0 0 2 -4,-1.7 4,-0.9 -5,-0.4 3,-0.8 0.995 109.2 51.3 -71.2 -69.8 -3.6 -2.5 -0.0 20 100 A R H 3< S+ 0 0 146 -4,-3.0 4,-0.3 1,-0.3 3,-0.3 0.778 115.4 49.3 -38.4 -31.6 -4.2 0.3 -2.5 21 101 A G H 3< S+ 0 0 60 -4,-1.7 3,-0.3 -5,-0.4 -1,-0.3 0.903 119.0 33.7 -78.0 -43.5 -4.5 -2.6 -5.0 22 102 A M H XX S+ 0 0 41 -4,-1.7 4,-1.2 -3,-0.8 3,-0.6 0.068 90.5 106.0 -99.1 22.9 -6.9 -4.7 -3.0 23 103 A D H 3X + 0 0 76 -4,-0.9 4,-1.5 -3,-0.3 -1,-0.2 0.961 64.5 67.2 -65.7 -53.5 -8.7 -1.7 -1.5 24 104 A G H 3> S+ 0 0 55 -4,-0.3 4,-1.4 -3,-0.3 -1,-0.2 0.742 103.4 51.8 -39.2 -26.6 -11.8 -2.0 -3.6 25 105 A L H <> S+ 0 0 79 -3,-0.6 4,-2.2 2,-0.2 -1,-0.2 0.967 96.2 61.2 -77.2 -58.4 -12.4 -5.1 -1.6 26 106 A F H < S+ 0 0 31 -4,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.806 109.2 48.9 -37.2 -37.4 -12.0 -3.7 1.9 27 107 A N H < S+ 0 0 130 -4,-1.5 -1,-0.2 1,-0.1 -2,-0.2 0.980 116.1 38.2 -69.7 -58.9 -15.0 -1.6 1.0 28 108 A T H < S+ 0 0 111 -4,-1.4 2,-0.6 1,-0.1 -2,-0.2 0.975 113.1 58.9 -56.4 -60.9 -17.2 -4.3 -0.4 29 109 A S S < S- 0 0 59 -4,-2.2 -1,-0.1 1,-0.2 0, 0.0 -0.624 71.8-158.5 -77.1 115.9 -16.3 -7.0 2.2 30 110 A K S S+ 0 0 196 -2,-0.6 2,-0.7 1,-0.1 -1,-0.2 0.970 81.6 55.3 -56.4 -58.9 -17.1 -5.7 5.7 31 111 A S - 0 0 90 1,-0.1 3,-0.4 4,-0.0 4,-0.2 -0.698 64.8-171.1 -83.2 113.0 -14.7 -8.1 7.5 32 112 A N > + 0 0 42 -2,-0.7 4,-2.0 1,-0.2 5,-0.2 -0.122 47.5 122.1 -94.2 36.7 -11.2 -7.6 6.0 33 113 A K H > S+ 0 0 142 2,-0.2 4,-1.7 3,-0.1 -1,-0.2 0.959 77.3 39.8 -62.2 -53.3 -9.9 -10.7 7.9 34 114 A H H >> S+ 0 0 126 -3,-0.4 4,-3.0 2,-0.2 3,-0.9 0.983 112.6 53.8 -60.3 -61.5 -8.7 -12.5 4.8 35 115 A L H 3> S+ 0 0 12 1,-0.3 4,-2.8 -4,-0.2 5,-0.2 0.880 110.6 48.4 -39.6 -51.3 -7.3 -9.5 3.0 36 116 A W H 3X S+ 0 0 30 -4,-2.0 4,-2.2 2,-0.2 -1,-0.3 0.874 114.7 46.6 -59.7 -38.6 -5.2 -8.7 6.0 37 117 A E H S+ 0 0 0 -4,-2.8 4,-2.8 -5,-0.4 5,-0.5 0.979 108.7 49.2 -58.4 -61.1 -1.4 -9.4 2.5 40 120 A S H X5S+ 0 0 7 -4,-2.2 4,-1.6 1,-0.3 10,-0.2 0.888 115.6 45.6 -45.7 -46.6 0.7 -10.1 5.5 41 121 A S H X5S+ 0 0 54 -4,-2.4 4,-2.9 2,-0.2 -1,-0.3 0.895 115.3 47.7 -65.9 -41.2 1.7 -13.5 4.0 42 122 A K H X5S+ 0 0 131 -4,-2.6 4,-1.6 -5,-0.2 -2,-0.2 0.991 114.6 42.1 -63.3 -63.3 2.3 -11.9 0.6 43 123 A M H X5S+ 0 0 1 -4,-2.8 4,-0.5 1,-0.2 5,-0.3 0.812 118.2 50.8 -54.2 -31.1 4.5 -8.9 1.7 44 124 A R H >X - 0 0 70 -2,-0.3 4,-1.3 1,-0.1 3,-0.0 -0.497 18.8-127.7 -87.4 157.5 3.1 -10.1 11.9 52 132 A P H > S+ 0 0 51 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.890 105.1 63.4 -69.7 -41.5 -0.3 -9.0 10.6 53 133 A D H > S+ 0 0 121 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.890 104.3 48.5 -50.5 -44.2 -1.2 -7.2 13.8 54 134 A M H > S+ 0 0 99 1,-0.2 4,-3.1 2,-0.2 5,-0.3 0.919 107.4 54.3 -63.7 -45.1 1.6 -4.8 13.3 55 135 A C H X S+ 0 0 0 -4,-1.3 4,-1.8 1,-0.2 -1,-0.2 0.857 110.7 47.8 -57.5 -36.5 0.6 -4.1 9.7 56 136 A T H X S+ 0 0 38 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.932 114.1 44.5 -70.9 -47.7 -2.9 -3.2 10.9 57 137 A D H X S+ 0 0 101 -4,-2.3 4,-1.9 2,-0.2 -2,-0.2 0.955 115.4 47.0 -61.6 -52.7 -1.7 -0.9 13.6 58 138 A K H X S+ 0 0 70 -4,-3.1 4,-2.5 1,-0.2 -1,-0.2 0.909 111.3 52.7 -56.1 -44.9 0.9 0.8 11.4 59 139 A W H X S+ 0 0 42 -4,-1.8 4,-2.0 -5,-0.3 -1,-0.2 0.925 105.2 54.7 -57.7 -47.5 -1.6 1.2 8.6 60 140 A R H X S+ 0 0 167 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.926 111.0 44.8 -52.4 -50.1 -4.1 2.9 10.9 61 141 A N H X S+ 0 0 84 -4,-1.9 4,-2.1 1,-0.2 5,-0.3 0.915 107.0 59.3 -61.6 -44.7 -1.6 5.5 12.0 62 142 A L H X S+ 0 0 31 -4,-2.5 4,-1.7 1,-0.2 -1,-0.2 0.872 109.1 45.5 -52.1 -40.1 -0.5 6.1 8.4 63 143 A L H X S+ 0 0 70 -4,-2.0 4,-3.0 -3,-0.2 -1,-0.2 0.961 105.2 58.3 -69.2 -53.2 -4.0 7.1 7.5 64 144 A K H < S+ 0 0 142 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.875 112.4 42.5 -43.3 -45.9 -4.6 9.3 10.5 65 145 A E H < S+ 0 0 121 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.894 111.2 54.8 -70.1 -41.1 -1.6 11.4 9.3 66 146 A F H < S+ 0 0 125 -4,-1.7 -2,-0.2 -5,-0.3 -1,-0.2 0.884 83.3 110.5 -59.8 -40.0 -2.7 11.2 5.7 67 147 A K < - 0 0 128 -4,-3.0 3,-0.2 1,-0.2 -3,-0.0 0.018 67.8-142.3 -37.3 138.6 -6.1 12.7 6.6 68 148 A K S S+ 0 0 156 1,-0.2 2,-0.2 3,-0.0 -1,-0.2 0.293 88.7 78.9 -90.7 9.2 -6.5 16.2 5.3 69 149 A A + 0 0 78 -5,-0.2 2,-0.3 3,-0.1 -1,-0.2 -0.422 70.0 112.5-114.1 55.5 -8.4 17.2 8.5 70 150 A K S S- 0 0 93 -3,-0.2 3,-0.2 -2,-0.2 -5,-0.0 -0.865 79.3-106.9-125.4 159.7 -5.5 17.6 10.9 71 151 A H S S+ 0 0 171 -2,-0.3 2,-0.8 1,-0.2 -1,-0.1 0.916 115.8 40.6 -47.8 -51.1 -3.9 20.6 12.7 72 152 A H + 0 0 111 1,-0.1 -1,-0.2 -3,-0.0 -3,-0.1 -0.853 63.4 156.6-106.8 100.1 -0.9 20.5 10.3 73 153 A D + 0 0 43 -2,-0.8 2,-0.6 -3,-0.2 3,-0.2 -0.240 36.7 113.4-114.5 42.5 -2.0 19.8 6.8 74 154 A R + 0 0 184 1,-0.2 -1,-0.0 0, 0.0 -2,-0.0 -0.865 59.3 51.5-119.0 97.3 1.0 21.3 5.0 75 155 A G + 0 0 80 -2,-0.6 2,-0.3 1,-0.1 -1,-0.2 0.451 65.1 133.2 142.4 60.1 3.1 18.8 3.1 76 156 A N - 0 0 116 -3,-0.2 2,-0.5 -8,-0.0 -1,-0.1 -0.974 34.1-154.1-133.2 146.5 1.2 16.5 0.8 77 157 A G - 0 0 81 -2,-0.3 2,-0.2 2,-0.0 0, 0.0 -0.976 8.1-159.7-126.0 126.1 1.8 15.3 -2.8 78 158 A S - 0 0 120 -2,-0.5 2,-0.3 0, 0.0 -2,-0.0 -0.629 9.1-176.4 -99.5 159.1 -0.8 14.1 -5.3 79 159 A A - 0 0 79 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.975 28.8-104.1-156.6 140.1 -0.4 12.0 -8.4 80 160 A K - 0 0 181 -2,-0.3 2,-0.3 1,-0.1 0, 0.0 -0.044 37.6-156.9 -56.9 164.9 -2.5 10.7 -11.2 81 161 A M - 0 0 161 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.891 7.1-142.5-141.3 170.5 -3.6 7.1 -11.3 82 162 A S - 0 0 96 -2,-0.3 2,-0.3 2,-0.0 0, 0.0 -0.990 8.4-156.7-139.7 147.2 -4.8 4.4 -13.7 83 163 A Y + 0 0 218 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.825 17.2 158.9-121.6 160.9 -7.3 1.6 -13.6 84 164 A Y - 0 0 188 -2,-0.3 2,-0.4 0, 0.0 -2,-0.0 -0.972 34.4-104.7-166.6 173.6 -7.8 -1.7 -15.4 85 165 A K 0 0 196 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.933 360.0 360.0-117.0 137.3 -9.4 -5.2 -15.4 86 166 A E 0 0 239 -2,-0.4 -1,-0.1 0, 0.0 0, 0.0 0.591 360.0 360.0 -43.7 360.0 -7.6 -8.4 -14.7