==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 09-FEB-07 2EBW . COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL . 97 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6471.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 18 18.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 37 A G 0 0 127 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 128.4 -9.1 23.3 -9.5 2 38 A S - 0 0 127 4,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.977 360.0-118.2-166.2 156.3 -6.9 23.1 -6.4 3 39 A S - 0 0 113 -2,-0.3 3,-0.3 1,-0.1 0, 0.0 -0.530 19.2-128.2 -97.9 166.3 -7.0 23.7 -2.6 4 40 A G S S+ 0 0 86 1,-0.2 2,-0.5 -2,-0.2 -1,-0.1 0.977 94.9 9.6 -77.0 -61.1 -5.0 26.2 -0.6 5 41 A S - 0 0 114 1,-0.2 -1,-0.2 3,-0.0 3,-0.0 -0.841 60.4-179.8-127.2 94.6 -3.5 24.0 2.1 6 42 A S - 0 0 110 -2,-0.5 2,-0.2 -3,-0.3 -1,-0.2 0.933 42.4-125.1 -56.3 -49.6 -3.9 20.3 1.6 7 43 A G S S+ 0 0 55 0, 0.0 2,-0.7 0, 0.0 -1,-0.1 -0.651 82.0 32.8 142.3 -83.7 -2.1 19.4 4.8 8 44 A T - 0 0 95 -2,-0.2 2,-1.2 29,-0.1 -3,-0.0 -0.785 67.1-160.5-113.1 87.8 0.8 17.0 4.4 9 45 A S + 0 0 111 -2,-0.7 2,-0.3 2,-0.1 29,-0.1 -0.526 37.5 137.6 -70.2 96.9 2.5 17.6 1.1 10 46 A S - 0 0 50 -2,-1.2 3,-0.3 27,-0.3 -2,-0.1 -0.963 40.2-167.5-148.3 126.7 4.5 14.4 0.6 11 47 A T > + 0 0 110 -2,-0.3 3,-1.1 1,-0.2 28,-0.1 -0.255 47.6 127.4-106.0 44.2 4.9 12.2 -2.5 12 48 A I T 3 S+ 0 0 33 1,-0.3 -1,-0.2 73,-0.0 27,-0.1 0.711 81.6 40.5 -71.3 -20.2 6.4 9.2 -0.7 13 49 A F T > S+ 0 0 0 25,-0.8 3,-1.2 -3,-0.3 -1,-0.3 -0.192 82.3 155.3-120.5 39.4 3.8 7.0 -2.4 14 50 A S T < S- 0 0 80 -3,-1.1 26,-0.2 1,-0.3 3,-0.1 -0.503 74.7 -1.6 -71.4 130.8 3.8 8.6 -5.8 15 51 A G T 3 S+ 0 0 49 24,-0.7 2,-0.6 -2,-0.3 -1,-0.3 0.857 97.1 137.9 57.8 36.4 2.7 6.2 -8.6 16 52 A V < - 0 0 20 -3,-1.2 25,-1.5 23,-0.5 2,-0.4 -0.870 34.5-168.0-118.8 98.4 2.2 3.5 -6.0 17 53 A A E -a 41 0A 1 -2,-0.6 36,-1.8 33,-0.3 35,-1.4 -0.707 7.2-169.8 -87.8 131.6 -0.9 1.4 -6.5 18 54 A I E -ab 42 53A 0 23,-2.0 25,-1.2 -2,-0.4 2,-0.4 -0.877 11.8-161.1-121.3 153.8 -2.0 -0.9 -3.7 19 55 A Y E - b 0 54A 34 34,-0.5 36,-0.7 -2,-0.3 2,-0.4 -0.901 10.7-149.2-139.1 107.8 -4.6 -3.6 -3.4 20 56 A V E - b 0 55A 14 -2,-0.4 2,-0.5 23,-0.2 36,-0.2 -0.625 16.0-172.0 -78.7 125.2 -5.9 -4.9 -0.1 21 57 A N - 0 0 44 34,-2.2 36,-0.4 -2,-0.4 37,-0.3 -0.965 49.8 -25.5-123.4 118.3 -6.9 -8.6 -0.1 22 58 A G S S- 0 0 60 -2,-0.5 2,-0.1 34,-0.1 6,-0.1 -0.288 112.4 -6.5 79.7-168.2 -8.6 -10.2 2.8 23 59 A Y S S+ 0 0 205 35,-0.1 34,-0.7 4,-0.1 35,-0.4 -0.389 74.8 163.9 -63.9 133.0 -8.4 -9.1 6.5 24 60 A T - 0 0 10 32,-0.1 4,-0.1 -2,-0.1 -2,-0.1 -0.989 35.1 -97.3-150.4 155.4 -5.8 -6.4 7.0 25 61 A D S S+ 0 0 68 -2,-0.3 2,-0.2 2,-0.1 54,-0.1 -0.972 110.9 24.8-128.2 119.9 -4.9 -3.8 9.6 26 62 A P S S- 0 0 35 0, 0.0 53,-0.1 0, 0.0 5,-0.0 0.596 114.2-101.8 -69.8-176.3 -5.8 -1.2 9.3 27 63 A S > - 0 0 57 -2,-0.2 4,-1.6 1,-0.1 5,-0.2 -0.043 30.4-103.8 -63.6 171.9 -8.9 -2.1 7.2 28 64 A A H > S+ 0 0 30 1,-0.2 4,-1.8 2,-0.2 5,-0.1 0.884 119.8 59.4 -66.1 -39.6 -9.0 -1.6 3.4 29 65 A E H > S+ 0 0 116 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.892 105.0 50.2 -56.3 -42.1 -11.1 1.5 3.7 30 66 A E H > S+ 0 0 84 1,-0.2 4,-2.1 2,-0.2 3,-0.5 0.949 112.7 44.1 -62.3 -51.0 -8.4 3.2 5.8 31 67 A L H X S+ 0 0 0 -4,-1.6 4,-1.1 1,-0.2 -1,-0.2 0.734 103.6 70.0 -66.5 -21.9 -5.7 2.3 3.3 32 68 A R H X S+ 0 0 98 -4,-1.8 4,-1.1 -5,-0.2 -1,-0.2 0.931 111.5 27.1 -61.3 -47.5 -8.0 3.4 0.5 33 69 A K H X S+ 0 0 59 -4,-1.3 4,-2.6 -3,-0.5 5,-0.5 0.955 110.3 66.4 -79.8 -56.6 -7.8 7.1 1.6 34 70 A L H X S+ 0 0 47 -4,-2.1 4,-0.9 1,-0.2 -1,-0.2 0.779 105.2 51.9 -34.7 -34.0 -4.4 7.2 3.2 35 71 A M H ><>S+ 0 0 0 -4,-1.1 5,-2.2 2,-0.2 3,-1.5 0.996 109.1 42.9 -69.4 -67.7 -3.2 6.5 -0.4 36 72 A M H ><5S+ 0 0 108 -4,-1.1 3,-1.7 1,-0.3 -2,-0.2 0.879 115.2 52.6 -45.7 -44.9 -5.0 9.2 -2.3 37 73 A L H 3<5S+ 0 0 118 -4,-2.6 -1,-0.3 1,-0.3 -27,-0.3 0.808 112.5 45.4 -63.2 -29.7 -4.0 11.6 0.5 38 74 A H T <<5S- 0 0 16 -3,-1.5 -25,-0.8 -4,-0.9 -1,-0.3 -0.005 129.5 -95.5-102.5 27.4 -0.4 10.5 0.1 39 75 A G T < 5S+ 0 0 39 -3,-1.7 -24,-0.7 1,-0.2 -23,-0.5 0.893 83.9 135.7 62.2 41.0 -0.5 10.7 -3.7 40 76 A G < - 0 0 11 -5,-2.2 2,-0.4 -7,-0.2 -23,-0.2 -0.516 50.4-120.1-111.9-178.8 -1.3 7.0 -4.1 41 77 A Q E -a 17 0A 95 -25,-1.5 -23,-2.0 -2,-0.2 2,-0.4 -0.972 15.7-158.2-127.6 140.6 -3.7 4.9 -6.1 42 78 A Y E -a 18 0A 63 -2,-0.4 2,-0.5 -25,-0.2 -23,-0.1 -0.961 4.3-167.2-121.0 133.4 -6.4 2.5 -5.0 43 79 A H - 0 0 33 -25,-1.2 -23,-0.2 -2,-0.4 4,-0.1 -0.975 14.7-159.2-123.1 125.9 -7.9 -0.4 -7.0 44 80 A V S S+ 0 0 108 -2,-0.5 2,-0.3 -25,-0.1 -1,-0.1 0.888 83.5 45.8 -66.5 -40.2 -11.1 -2.2 -6.1 45 81 A Y S S- 0 0 195 1,-0.0 2,-0.5 -26,-0.0 6,-0.2 -0.742 98.2 -99.4-105.8 154.0 -10.2 -5.2 -8.2 46 82 A Y - 0 0 71 -2,-0.3 2,-0.4 4,-0.1 -2,-0.1 -0.591 45.5-176.1 -74.5 118.1 -6.8 -7.0 -8.4 47 83 A S - 0 0 39 -2,-0.5 -4,-0.0 1,-0.1 -28,-0.0 -0.914 28.2-157.6-119.0 144.4 -4.9 -5.8 -11.5 48 84 A R S S+ 0 0 208 -2,-0.4 -1,-0.1 2,-0.1 -2,-0.0 0.649 99.3 32.7 -90.1 -18.4 -1.6 -7.0 -12.8 49 85 A S S S+ 0 0 110 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.825 125.8 37.0-102.3 -49.6 -1.0 -3.8 -14.7 50 86 A K S S+ 0 0 142 2,-0.0 -33,-0.3 -4,-0.0 -2,-0.1 0.999 106.0 65.4 -66.9 -71.9 -2.6 -1.1 -12.6 51 87 A T - 0 0 5 -6,-0.2 -33,-0.2 1,-0.2 3,-0.1 -0.286 59.6-170.9 -56.2 131.8 -1.8 -2.4 -9.1 52 88 A T + 0 0 63 -35,-1.4 2,-0.3 1,-0.2 19,-0.3 0.747 69.3 19.5 -95.5 -30.1 1.9 -2.3 -8.3 53 89 A H E -b 18 0A 32 -36,-1.8 2,-0.6 17,-0.1 -34,-0.5 -0.914 69.6-127.2-137.6 163.7 1.8 -4.2 -5.1 54 90 A I E -b 19 0A 4 17,-2.0 19,-0.4 -2,-0.3 2,-0.3 -0.892 21.4-151.8-118.4 102.1 -0.5 -6.6 -3.2 55 91 A I E +b 20 0A 0 -36,-0.7 -34,-2.2 -2,-0.6 2,-0.3 -0.557 36.5 135.4 -74.2 127.6 -1.3 -5.5 0.4 56 92 A A - 0 0 0 17,-1.7 39,-0.1 -2,-0.3 -32,-0.1 -0.961 45.7-153.8-169.0 152.5 -2.1 -8.4 2.7 57 93 A T S S+ 0 0 48 -34,-0.7 2,-0.3 1,-0.4 -33,-0.1 0.796 84.0 3.6 -99.6 -39.4 -1.4 -9.8 6.1 58 94 A N - 0 0 122 -35,-0.4 -1,-0.4 -37,-0.3 -35,-0.1 -0.997 60.2-165.8-150.2 146.6 -1.9 -13.5 5.5 59 95 A L - 0 0 7 -2,-0.3 2,-0.1 -3,-0.1 -37,-0.0 -0.991 26.9-109.5-137.0 143.7 -2.7 -15.8 2.6 60 96 A P > - 0 0 72 0, 0.0 4,-2.5 0, 0.0 5,-0.3 -0.365 35.4-108.5 -69.8 146.8 -3.9 -19.4 2.3 61 97 A N T 4 S+ 0 0 145 1,-0.2 4,-0.3 2,-0.2 -2,-0.0 0.823 122.5 53.3 -42.1 -36.9 -1.5 -22.1 0.9 62 98 A A T >> S+ 0 0 70 2,-0.2 3,-2.3 1,-0.2 4,-0.7 0.970 106.9 47.6 -65.1 -55.9 -3.7 -22.0 -2.2 63 99 A K H >> S+ 0 0 66 1,-0.3 3,-1.9 2,-0.2 4,-1.5 0.901 101.3 65.5 -52.3 -45.1 -3.5 -18.3 -2.8 64 100 A I H 3< S+ 0 0 50 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.678 100.1 55.0 -52.8 -15.9 0.2 -18.4 -2.3 65 101 A K H X4 S+ 0 0 167 -3,-2.3 3,-0.6 -5,-0.3 -1,-0.3 0.746 106.3 47.7 -88.9 -27.5 0.1 -20.5 -5.5 66 102 A E H << S+ 0 0 106 -3,-1.9 -2,-0.2 -4,-0.7 -1,-0.1 0.605 112.9 50.3 -87.3 -13.8 -1.8 -17.9 -7.5 67 103 A L T 3< S+ 0 0 19 -4,-1.5 2,-1.4 2,-0.1 -1,-0.2 -0.184 71.2 144.7-116.1 38.9 0.6 -15.1 -6.4 68 104 A K S < S+ 0 0 183 -3,-0.6 3,-0.1 1,-0.2 -3,-0.1 -0.633 76.8 13.0 -81.7 91.5 3.9 -16.9 -7.2 69 105 A G S S+ 0 0 69 -2,-1.4 -1,-0.2 1,-0.5 -2,-0.1 -0.160 99.7 102.6 139.1 -43.4 6.1 -14.0 -8.3 70 106 A E S S- 0 0 80 1,-0.1 2,-0.6 27,-0.0 -1,-0.5 -0.023 75.4-107.8 -63.5 173.6 4.2 -10.8 -7.3 71 107 A K - 0 0 66 -19,-0.3 -17,-2.0 -3,-0.1 2,-0.9 -0.902 29.3-169.2-112.9 106.2 5.2 -8.8 -4.2 72 108 A V - 0 0 12 -2,-0.6 23,-2.0 24,-0.3 2,-0.3 -0.818 9.9-173.0 -98.0 103.5 2.8 -9.0 -1.3 73 109 A I B -C 94 0B 0 -2,-0.9 -17,-1.7 -19,-0.4 21,-0.2 -0.747 26.6-108.9 -97.9 143.3 3.7 -6.4 1.3 74 110 A R > - 0 0 84 19,-2.1 3,-1.6 -2,-0.3 4,-0.4 -0.256 26.2-115.0 -66.4 154.3 2.0 -6.3 4.8 75 111 A P T 3> S+ 0 0 1 0, 0.0 4,-1.1 0, 0.0 -1,-0.1 0.440 112.0 70.2 -69.7 2.0 -0.5 -3.4 5.5 76 112 A E H 3> S+ 0 0 56 2,-0.2 4,-2.2 1,-0.1 5,-0.4 0.677 80.9 71.0 -91.6 -21.4 2.1 -2.2 8.1 77 113 A W H <> S+ 0 0 11 -3,-1.6 4,-0.9 2,-0.2 11,-0.4 0.844 108.4 35.5 -63.3 -34.2 4.6 -1.1 5.5 78 114 A I H > S+ 0 0 0 -4,-0.4 4,-2.7 2,-0.2 5,-0.2 0.923 115.0 53.0 -84.5 -51.8 2.3 1.8 4.6 79 115 A V H X S+ 0 0 15 -4,-1.1 4,-2.8 1,-0.2 5,-0.2 0.929 114.2 43.3 -48.7 -53.8 0.9 2.6 8.1 80 116 A E H X S+ 0 0 91 -4,-2.2 4,-2.2 1,-0.2 5,-0.3 0.931 111.6 53.9 -59.5 -48.0 4.3 2.9 9.6 81 117 A S H X>S+ 0 0 0 -4,-0.9 5,-2.2 -5,-0.4 4,-1.2 0.867 112.8 45.2 -55.1 -38.5 5.7 4.9 6.6 82 118 A I H <5S+ 0 0 31 -4,-2.7 3,-0.3 2,-0.2 -2,-0.2 0.958 108.9 52.8 -70.8 -53.1 2.8 7.3 7.1 83 119 A K H <5S+ 0 0 158 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.837 116.6 42.1 -51.6 -35.1 3.1 7.7 10.8 84 120 A A H <5S- 0 0 67 -4,-2.2 -1,-0.3 2,-0.2 -2,-0.2 0.743 108.9-127.9 -84.0 -25.8 6.8 8.5 10.3 85 121 A G T <5S+ 0 0 40 -4,-1.2 2,-0.3 -3,-0.3 -3,-0.2 0.715 76.8 85.5 84.7 22.0 6.1 10.7 7.3 86 122 A R S S+ 0 0 90 2,-0.1 3,-1.3 -2,-0.1 -16,-0.2 0.576 72.1 84.4-117.1 -21.9 9.5 -3.2 1.9 91 127 A I G > S+ 0 0 106 1,-0.3 3,-1.6 2,-0.2 6,-0.0 0.938 98.8 39.7 -45.9 -58.7 12.0 -6.1 1.9 92 128 A P G 3 S+ 0 0 80 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.575 111.3 62.0 -69.8 -8.8 11.3 -6.9 5.6 93 129 A Y G < S+ 0 0 45 -3,-1.3 -19,-2.1 -19,-0.0 2,-0.6 0.249 78.6 109.5-100.2 10.6 7.6 -6.3 4.8 94 130 A Q B < -C 73 0B 20 -3,-1.6 3,-0.3 -21,-0.2 -21,-0.2 -0.798 50.0-166.5 -93.2 117.9 7.5 -9.1 2.3 95 131 A L S S+ 0 0 43 -23,-2.0 2,-0.8 -2,-0.6 -1,-0.2 0.999 80.9 17.2 -63.0 -74.8 5.4 -12.1 3.4 96 132 A Y 0 0 103 -24,-0.2 -24,-0.3 0, 0.0 -1,-0.3 -0.827 360.0 360.0-106.6 95.8 6.4 -14.7 0.9 97 133 A T 0 0 131 -2,-0.8 -26,-0.1 -3,-0.3 -27,-0.0 -0.904 360.0 360.0-133.5 360.0 9.6 -13.7 -0.9