==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 10-FEB-07 2EC7 . COMPND 2 MOLECULE: GAG POLYPROTEIN (PR55GAG); . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 2 . AUTHOR T.MATSUI,Y.KODERA,T.TANAKA,H.ENDOH,H.TANAKA,E.MIYAUCHI, . 49 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4559.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 17 34.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 8.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 142 0, 0.0 2,-2.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -90.3 13.1 -0.6 -18.9 2 2 A Q + 0 0 159 1,-0.1 2,-1.0 2,-0.0 0, 0.0 -0.453 360.0 160.4 -75.2 78.5 11.5 1.5 -16.1 3 3 A Q + 0 0 171 -2,-2.3 2,-0.3 2,-0.0 -1,-0.1 -0.687 33.9 90.3-103.4 83.9 13.5 0.0 -13.2 4 4 A R + 0 0 161 -2,-1.0 2,-0.3 2,-0.0 -2,-0.0 -0.917 40.5 175.5-170.5 141.9 13.2 2.6 -10.4 5 5 A K - 0 0 153 -2,-0.3 2,-0.1 3,-0.0 3,-0.1 -0.993 19.3-137.0-153.5 145.2 10.9 3.3 -7.4 6 6 A V - 0 0 105 -2,-0.3 10,-0.1 1,-0.2 11,-0.1 -0.458 64.3 -43.4 -96.1 173.6 10.7 5.7 -4.5 7 7 A I - 0 0 102 8,-0.2 9,-2.9 9,-0.1 10,-0.6 -0.045 68.2-136.2 -36.0 109.8 9.9 4.9 -0.8 8 8 A R B -A 15 0A 170 7,-0.3 2,-0.8 8,-0.2 7,-0.3 -0.626 14.7-122.0 -79.3 124.7 6.9 2.6 -1.4 9 9 A a >> - 0 0 0 5,-1.6 4,-3.5 -2,-0.5 3,-0.9 -0.499 26.8-141.0 -68.2 109.1 4.0 3.4 1.1 10 10 A W T 34 S+ 0 0 93 -2,-0.8 2,-0.5 1,-0.2 12,-0.1 -0.243 83.8 39.5 -65.5 159.6 3.4 0.2 3.0 11 11 A N T 34 S+ 0 0 0 1,-0.2 17,-0.8 17,-0.1 -1,-0.2 -0.214 136.0 21.6 90.8 -43.3 -0.3 -0.5 3.8 12 12 A C T <4 S- 0 0 14 -3,-0.9 -2,-0.2 -2,-0.5 -1,-0.2 0.589 103.2-121.9-125.0 -27.0 -1.4 0.7 0.3 13 13 A G < + 0 0 41 -4,-3.5 2,-0.4 1,-0.2 -3,-0.2 0.960 52.7 148.5 81.0 73.6 1.8 0.4 -1.8 14 14 A K > - 0 0 112 -5,-0.4 -5,-1.6 3,-0.2 3,-1.2 -0.905 50.6-124.4-143.7 114.2 2.5 3.9 -3.1 15 15 A E B 3 S+A 8 0A 44 -2,-0.4 -7,-0.3 -7,-0.3 -8,-0.2 -0.345 92.9 66.8 -56.6 101.5 5.9 5.4 -3.8 16 16 A G T 3 S- 0 0 53 -9,-2.9 2,-0.2 -2,-0.8 -1,-0.2 0.186 103.6 -2.3 172.8 -30.9 5.8 8.5 -1.7 17 17 A H < - 0 0 44 -3,-1.2 -1,-0.5 -10,-0.6 -7,-0.2 -0.772 67.3-104.4-156.1-159.0 5.6 7.6 2.0 18 18 A S > - 0 0 52 -9,-0.3 4,-0.6 -2,-0.2 -6,-0.1 -0.303 47.8 -77.0-123.1-151.4 5.5 4.7 4.5 19 19 A A T 4 S+ 0 0 39 1,-0.2 -10,-0.1 2,-0.2 -11,-0.0 0.588 116.3 70.9 -91.1 -11.1 2.9 2.9 6.7 20 20 A R T 4 S+ 0 0 237 1,-0.2 -1,-0.2 3,-0.0 -11,-0.0 0.840 113.1 25.2 -75.3 -31.5 2.9 5.6 9.4 21 21 A Q T 4 S+ 0 0 156 -3,-0.1 2,-0.5 2,-0.0 -1,-0.2 0.598 108.5 85.7-106.1 -15.3 1.1 8.2 7.2 22 22 A a < + 0 0 11 -4,-0.6 -9,-0.0 1,-0.1 -12,-0.0 -0.742 33.4 140.0 -91.6 130.9 -0.7 5.8 4.9 23 23 A R + 0 0 176 -2,-0.5 -1,-0.1 -12,-0.0 -12,-0.1 0.116 23.5 162.6-152.5 21.3 -4.1 4.4 6.0 24 24 A A - 0 0 39 1,-0.1 3,-0.5 2,-0.1 -2,-0.0 0.127 50.1-112.0 -39.9 165.8 -6.2 4.4 2.8 25 25 A P S S+ 0 0 132 0, 0.0 -1,-0.1 0, 0.0 0, 0.0 0.910 114.7 64.5 -72.6 -44.2 -9.3 2.3 2.7 26 26 A R S S+ 0 0 154 2,-0.1 -2,-0.1 10,-0.0 -15,-0.1 0.699 80.5 132.2 -53.4 -16.2 -8.0 -0.1 0.1 27 27 A R - 0 0 81 -3,-0.5 2,-0.4 1,-0.1 -15,-0.2 0.210 51.9-139.7 -32.5 160.4 -5.4 -1.0 2.9 28 28 A Q - 0 0 57 -17,-0.8 8,-0.2 1,-0.2 -17,-0.1 -0.957 4.9-142.8-134.6 115.8 -4.8 -4.7 3.6 29 29 A G S S+ 0 0 16 -2,-0.4 8,-0.2 10,-0.1 -1,-0.2 0.929 90.4 38.9 -39.5 -73.2 -4.4 -6.0 7.2 30 30 A b - 0 0 3 8,-1.3 5,-0.5 6,-1.2 9,-0.1 -0.251 64.6-170.5 -74.1 168.8 -1.7 -8.6 6.3 31 31 A W S S+ 0 0 85 3,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.575 73.1 74.0-132.1 -30.0 1.0 -7.8 3.7 32 32 A K S S+ 0 0 139 1,-0.2 -2,-0.0 13,-0.0 7,-0.0 0.786 129.2 3.2 -60.0 -21.5 2.8 -11.1 3.0 33 33 A b S S- 0 0 62 -5,-0.1 -1,-0.2 12,-0.0 -2,-0.1 0.575 99.8-127.0-132.1 -36.9 -0.4 -12.0 1.1 34 34 A G + 0 0 21 2,-0.1 -3,-0.2 -6,-0.1 5,-0.1 0.723 54.5 127.7 85.4 107.4 -2.7 -9.0 1.1 35 35 A K - 0 0 131 -5,-0.5 2,-0.3 3,-0.2 4,-0.1 0.194 58.6 -78.5-151.8 -77.1 -6.3 -9.6 2.3 36 36 A T S S- 0 0 84 2,-0.4 -6,-1.2 -8,-0.2 -1,-0.2 -0.926 82.7 -16.0-175.5-161.1 -7.9 -7.5 5.1 37 37 A G S S+ 0 0 56 -2,-0.3 -9,-0.1 -8,-0.2 -10,-0.0 0.802 106.5 96.4 -27.7 -46.6 -8.0 -7.0 8.9 38 38 A H - 0 0 38 -9,-0.1 -8,-1.3 1,-0.1 -2,-0.4 -0.101 63.8-166.2 -46.6 147.6 -6.4 -10.4 9.2 39 39 A V > - 0 0 60 -10,-0.2 3,-3.2 -9,-0.1 4,-0.3 -0.860 39.9 -88.0-135.0 171.0 -2.6 -10.2 9.6 40 40 A M G > S+ 0 0 111 1,-0.3 3,-1.2 -2,-0.3 -1,-0.1 0.883 123.0 68.4 -48.0 -37.1 0.4 -12.4 9.4 41 41 A A G 3 S+ 0 0 90 1,-0.3 -1,-0.3 -3,-0.0 -3,-0.1 0.808 125.5 10.1 -53.3 -26.7 -0.2 -13.2 13.1 42 42 A K G < S+ 0 0 174 -3,-3.2 -1,-0.3 0, 0.0 -2,-0.2 0.001 91.4 143.7-143.9 32.4 -3.3 -15.0 11.9 43 43 A C < - 0 0 23 -3,-1.2 -3,-0.0 -4,-0.3 -8,-0.0 -0.640 37.9-156.2 -80.9 130.2 -3.0 -15.1 8.1 44 44 A P - 0 0 51 0, 0.0 -1,-0.2 0, 0.0 -4,-0.0 0.740 22.6-149.6 -75.9 -23.9 -4.3 -18.4 6.6 45 45 A E S S- 0 0 98 -3,-0.0 -2,-0.0 2,-0.0 -12,-0.0 0.959 70.6 -14.4 51.9 84.4 -2.1 -18.0 3.5 46 46 A R S S+ 0 0 224 2,-0.0 2,-0.1 1,-0.0 -3,-0.0 0.859 88.3 158.4 58.6 106.0 -4.2 -19.6 0.8 47 47 A Q - 0 0 146 2,-0.2 -2,-0.0 0, 0.0 -1,-0.0 -0.235 59.7 -51.7-130.6-138.9 -7.0 -21.7 2.4 48 48 A A 0 0 107 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.071 360.0 360.0 -98.6 36.7 -10.4 -23.0 1.2 49 49 A G 0 0 142 0, 0.0 -2,-0.2 0, 0.0 0, 0.0 -0.841 360.0 360.0-120.8 360.0 -11.6 -19.6 -0.1