==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 13-FEB-07 2ECI . COMPND 2 MOLECULE: TNF RECEPTOR-ASSOCIATED FACTOR 6; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.MIYAMOTO,M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8117.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 31.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 136 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 94.8 -69.6 35.0 11.3 2 2 A S - 0 0 110 3,-0.0 0, 0.0 0, 0.0 0, 0.0 0.866 360.0-153.4 -91.0 -44.9 -67.5 32.6 9.3 3 3 A S - 0 0 118 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.903 40.4-102.4 70.4 42.6 -64.2 33.0 11.1 4 4 A G - 0 0 53 1,-0.1 2,-0.3 2,-0.0 0, 0.0 0.018 48.9 -97.6 41.4-147.2 -62.1 32.1 8.1 5 5 A S - 0 0 125 2,-0.0 2,-0.3 0, 0.0 -1,-0.1 -0.980 28.8-160.5-164.6 154.8 -60.8 28.5 8.0 6 6 A S + 0 0 132 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 -0.820 13.5 160.3-134.4 173.5 -57.7 26.5 8.8 7 7 A G - 0 0 63 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.874 21.9-129.2-167.1-161.0 -56.1 23.1 8.0 8 8 A M - 0 0 171 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.919 11.3-171.0-171.8 145.0 -53.0 21.0 7.9 9 9 A E - 0 0 175 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.999 1.9-177.4-146.0 141.8 -51.1 18.7 5.5 10 10 A E - 0 0 176 -2,-0.3 2,-0.4 2,-0.0 -2,-0.0 -0.971 1.4-177.1-144.3 125.1 -48.1 16.4 5.9 11 11 A I + 0 0 139 -2,-0.4 2,-0.3 2,-0.0 -2,-0.0 -0.983 11.8 161.7-126.7 127.9 -46.3 14.3 3.2 12 12 A Q - 0 0 176 -2,-0.4 2,-0.2 2,-0.0 -2,-0.0 -0.940 18.0-170.2-140.0 161.3 -43.4 11.9 3.8 13 13 A G + 0 0 76 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.643 10.2 178.2-158.2 94.5 -41.7 9.0 2.0 14 14 A Y + 0 0 213 -2,-0.2 2,-0.2 2,-0.0 -2,-0.0 -0.707 7.5 160.7 -99.2 150.2 -39.2 6.8 3.7 15 15 A D - 0 0 136 -2,-0.3 2,-0.7 2,-0.0 -2,-0.0 -0.744 20.8-165.1-170.9 117.7 -37.4 3.8 2.1 16 16 A V + 0 0 121 -2,-0.2 2,-0.3 2,-0.0 -2,-0.0 -0.813 40.4 127.6-111.3 91.7 -34.2 1.9 3.0 17 17 A E + 0 0 141 -2,-0.7 2,-0.3 2,-0.0 -2,-0.0 -0.988 20.7 160.3-144.1 151.4 -33.2 -0.3 0.0 18 18 A F - 0 0 159 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.942 28.4-137.7-169.1 146.8 -30.1 -0.8 -2.1 19 19 A D - 0 0 148 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.920 22.6-142.0-117.4 108.5 -28.5 -3.4 -4.4 20 20 A P - 0 0 103 0, 0.0 3,-0.1 0, 0.0 -2,-0.0 -0.445 22.1-119.6 -69.7 134.3 -24.7 -4.0 -3.9 21 21 A P - 0 0 115 0, 0.0 2,-0.5 0, 0.0 0, 0.0 -0.213 42.4 -76.4 -69.7 162.5 -22.7 -4.6 -7.1 22 22 A L - 0 0 167 1,-0.1 2,-0.9 2,-0.1 3,-0.0 -0.471 45.0-167.9 -64.6 111.2 -20.8 -7.8 -7.9 23 23 A E + 0 0 156 -2,-0.5 -1,-0.1 1,-0.1 4,-0.1 -0.614 41.1 127.1-103.0 72.2 -17.7 -7.6 -5.7 24 24 A S + 0 0 117 -2,-0.9 2,-0.3 2,-0.1 -1,-0.1 -0.234 56.7 69.3-119.6 42.2 -15.6 -10.5 -7.2 25 25 A K S S- 0 0 135 -3,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.882 94.3 -92.0-162.2 126.0 -12.4 -8.6 -7.9 26 26 A Y - 0 0 108 -2,-0.3 9,-0.4 1,-0.1 2,-0.2 -0.085 50.4-156.1 -39.6 117.7 -9.7 -7.1 -5.7 27 27 A E - 0 0 75 7,-0.1 19,-0.2 -4,-0.1 7,-0.1 -0.577 21.9 -98.5 -99.8 164.4 -10.8 -3.5 -5.2 28 28 A C > - 0 0 0 5,-1.2 4,-2.6 -2,-0.2 5,-0.4 -0.735 22.6-161.1 -87.4 112.7 -8.7 -0.4 -4.3 29 29 A P T 4 S+ 0 0 61 0, 0.0 -1,-0.1 0, 0.0 18,-0.1 0.474 89.7 56.3 -69.8 -0.6 -9.0 0.3 -0.5 30 30 A I T 4 S+ 0 0 61 3,-0.1 17,-0.1 0, 0.0 -2,-0.0 0.888 124.9 13.3 -95.2 -56.5 -7.8 3.8 -1.3 31 31 A C T 4 S- 0 0 47 2,-0.2 3,-0.1 3,-0.0 16,-0.0 0.631 94.7-133.0 -94.8 -18.1 -10.3 5.1 -3.9 32 32 A L < + 0 0 125 -4,-2.6 2,-0.3 1,-0.2 -5,-0.0 0.952 69.6 90.1 64.2 51.4 -12.8 2.4 -3.2 33 33 A M S S- 0 0 115 -5,-0.4 -5,-1.2 0, 0.0 -1,-0.2 -0.978 87.3 -45.6-164.3 168.5 -13.4 1.6 -6.9 34 34 A A S S- 0 0 68 -2,-0.3 -7,-0.1 -7,-0.1 2,-0.1 -0.078 71.0-100.1 -42.8 134.3 -12.3 -0.5 -9.9 35 35 A L - 0 0 16 -9,-0.4 -1,-0.1 1,-0.1 13,-0.0 -0.379 25.9-149.6 -62.8 132.7 -8.5 -0.4 -10.1 36 36 A R S S- 0 0 181 -3,-0.1 -1,-0.1 -2,-0.1 12,-0.1 0.988 92.2 -1.7 -66.8 -61.6 -7.2 2.0 -12.8 37 37 A E S S- 0 0 111 2,-0.1 11,-0.1 10,-0.0 -1,-0.1 0.671 92.3-131.1-102.7 -25.1 -4.1 0.2 -13.8 38 38 A A + 0 0 28 1,-0.2 2,-0.3 -4,-0.1 10,-0.2 0.960 40.1 173.6 72.0 53.7 -4.4 -2.7 -11.4 39 39 A V E -A 47 0A 2 8,-1.3 8,-2.2 38,-0.1 2,-0.2 -0.744 20.3-141.3 -96.8 142.0 -0.8 -2.6 -10.0 40 40 A Q E -A 46 0A 105 -2,-0.3 36,-0.5 6,-0.2 6,-0.2 -0.566 10.8-132.4 -98.0 163.5 0.3 -4.8 -7.1 41 41 A T E > -A 45 0A 4 4,-2.7 4,-0.5 -2,-0.2 3,-0.2 -0.846 12.9-131.5-117.3 153.5 2.6 -4.0 -4.2 42 42 A P T 4 S+ 0 0 74 0, 0.0 -1,-0.1 0, 0.0 33,-0.1 0.803 104.7 64.1 -69.8 -30.4 5.7 -5.8 -2.7 43 43 A C T 4 S- 0 0 40 25,-0.1 26,-0.0 1,-0.1 -3,-0.0 0.899 126.7 -89.0 -61.1 -42.1 4.3 -5.4 0.8 44 44 A G T 4 S+ 0 0 45 1,-0.2 2,-0.3 -3,-0.2 -1,-0.1 0.606 88.4 89.3 130.9 51.6 1.3 -7.5 0.0 45 45 A H E < -A 41 0A 54 -4,-0.5 -4,-2.7 2,-0.0 2,-0.4 -0.933 61.3-116.9-156.7 176.8 -1.6 -5.5 -1.4 46 46 A R E +A 40 0A 71 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.992 36.1 153.4-130.8 130.5 -3.2 -4.1 -4.5 47 47 A F E -A 39 0A 0 -8,-2.2 -8,-1.3 -2,-0.4 2,-0.5 -0.916 48.7 -81.5-146.2 171.0 -3.7 -0.5 -5.5 48 48 A C >> - 0 0 2 -2,-0.3 4,-2.5 -10,-0.2 5,-0.5 -0.674 35.6-128.5 -81.9 120.9 -4.0 1.8 -8.5 49 49 A K H >5S+ 0 0 82 -2,-0.5 4,-0.7 1,-0.3 -1,-0.2 0.764 115.2 44.0 -35.5 -31.0 -0.6 2.8 -10.0 50 50 A A H >5S+ 0 0 46 2,-0.2 4,-2.0 3,-0.1 -1,-0.3 0.904 112.0 49.1 -83.4 -47.1 -2.0 6.3 -9.7 51 51 A C H >5S+ 0 0 26 -3,-0.3 4,-2.7 1,-0.2 5,-0.2 0.937 111.9 49.1 -58.1 -49.6 -3.5 6.0 -6.2 52 52 A I H X5S+ 0 0 0 -4,-2.5 4,-1.5 1,-0.2 -1,-0.2 0.864 110.1 52.7 -58.9 -37.3 -0.3 4.5 -4.8 53 53 A I H XS+ 0 0 12 -4,-2.7 4,-2.2 2,-0.2 5,-1.5 0.852 110.4 46.1 -59.7 -35.5 -0.4 8.2 -1.4 56 56 A I H <5S+ 0 0 11 -4,-1.5 -2,-0.2 3,-0.2 -1,-0.2 0.978 117.5 38.8 -71.5 -58.7 3.4 8.4 -1.4 57 57 A R H <5S+ 0 0 201 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.823 120.6 50.3 -61.5 -31.7 3.8 12.0 -2.6 58 58 A D H <5S- 0 0 127 -4,-2.9 -2,-0.2 -5,-0.2 -3,-0.2 0.991 138.0 -4.1 -70.1 -64.0 0.9 12.9 -0.4 59 59 A A T <5S- 0 0 66 -4,-2.2 2,-0.3 -5,-0.3 -3,-0.2 0.894 107.0-106.8 -95.3 -61.8 1.9 11.3 2.9 60 60 A G < - 0 0 22 -5,-1.5 2,-1.7 2,-0.2 -1,-0.2 -0.927 58.7 -21.0 154.8-177.8 5.1 9.5 2.2 61 61 A H S S+ 0 0 99 -2,-0.3 2,-0.3 8,-0.1 10,-0.1 -0.363 95.1 107.1 -59.9 86.9 6.8 6.1 1.7 62 62 A K S S- 0 0 51 -2,-1.7 -2,-0.2 7,-0.2 7,-0.2 -0.958 73.4-100.7-165.1 146.1 4.2 4.1 3.5 63 63 A C > - 0 0 0 -2,-0.3 4,-1.9 1,-0.1 6,-0.1 -0.502 24.3-135.0 -73.5 134.9 1.4 1.6 2.7 64 64 A P T 4 S+ 0 0 40 0, 0.0 -1,-0.1 0, 0.0 -12,-0.0 0.386 107.2 28.7 -69.7 6.1 -2.2 3.1 2.7 65 65 A V T 4 S+ 0 0 64 3,-0.1 -2,-0.0 -20,-0.0 -20,-0.0 0.567 141.1 15.6-132.1 -40.5 -3.2 0.0 4.7 66 66 A D T 4 S- 0 0 46 2,-0.1 -3,-0.0 0, 0.0 0, 0.0 0.443 87.4-136.1-116.1 -7.8 -0.1 -1.1 6.7 67 67 A N < + 0 0 103 -4,-1.9 2,-0.4 1,-0.2 -6,-0.0 0.906 43.8 166.3 50.3 47.2 1.9 2.0 6.3 68 68 A E - 0 0 110 1,-0.1 -1,-0.2 0, 0.0 -25,-0.1 -0.808 52.6 -88.7 -98.2 132.3 5.0 -0.1 5.6 69 69 A I + 0 0 147 -2,-0.4 2,-0.4 -7,-0.2 -7,-0.2 -0.084 64.2 168.9 -38.6 100.3 8.1 1.6 4.1 70 70 A L - 0 0 3 -10,-0.1 2,-0.3 -28,-0.0 -8,-0.1 -0.979 19.7-158.4-126.7 135.7 7.3 1.3 0.4 71 71 A L - 0 0 65 -2,-0.4 3,-0.1 1,-0.1 -15,-0.0 -0.764 21.6-129.7-110.6 157.1 9.0 2.9 -2.6 72 72 A E S > S+ 0 0 81 -2,-0.3 3,-1.5 1,-0.2 -1,-0.1 0.978 106.6 58.7 -66.6 -58.0 7.7 3.6 -6.1 73 73 A N T 3 S+ 0 0 148 1,-0.3 -1,-0.2 3,-0.0 0, 0.0 0.777 97.6 66.3 -42.6 -29.4 10.7 2.1 -8.0 74 74 A Q T 3 S+ 0 0 106 -3,-0.1 -1,-0.3 3,-0.0 2,-0.2 -0.018 93.1 87.0 -85.2 31.6 9.7 -1.0 -6.1 75 75 A L < + 0 0 13 -3,-1.5 -34,-0.1 1,-0.1 -3,-0.1 -0.592 45.2 70.4-120.2-177.4 6.4 -1.1 -8.0 76 76 A F + 0 0 81 -36,-0.5 3,-0.5 -2,-0.2 -1,-0.1 0.913 48.1 158.5 73.0 44.8 5.2 -2.5 -11.4 77 77 A P + 0 0 72 0, 0.0 -36,-0.1 0, 0.0 -38,-0.1 0.762 65.6 67.1 -69.7 -26.0 5.3 -6.1 -10.3 78 78 A D S S+ 0 0 97 -38,-0.2 2,-0.4 2,-0.1 -39,-0.0 0.864 79.4 92.7 -63.1 -37.0 2.8 -7.1 -13.0 79 79 A N - 0 0 89 -3,-0.5 0, 0.0 1,-0.2 0, 0.0 -0.447 63.6-159.7 -63.6 117.4 5.4 -6.2 -15.7 80 80 A F S S+ 0 0 199 -2,-0.4 2,-0.4 2,-0.0 -1,-0.2 0.299 74.5 68.3 -81.1 10.7 7.3 -9.4 -16.5 81 81 A A - 0 0 46 2,-0.0 2,-0.6 0, 0.0 -2,-0.1 -0.995 62.9-160.3-134.7 138.3 10.0 -7.2 -18.0 82 82 A K - 0 0 185 -2,-0.4 2,-1.1 2,-0.1 -2,-0.0 -0.794 9.4-167.9-120.0 88.3 12.4 -4.8 -16.3 83 83 A R + 0 0 231 -2,-0.6 2,-0.5 2,-0.1 -2,-0.0 -0.642 18.5 165.3 -79.0 101.1 13.8 -2.3 -18.8 84 84 A E S S- 0 0 142 -2,-1.1 -2,-0.1 1,-0.1 -1,-0.0 -0.953 70.8 -46.9-124.0 113.7 16.7 -0.7 -17.0 85 85 A I 0 0 177 -2,-0.5 -1,-0.1 1,-0.1 -2,-0.1 0.790 360.0 360.0 32.3 39.4 19.3 1.4 -19.0 86 86 A L 0 0 177 0, 0.0 -1,-0.1 0, 0.0 -3,-0.0 0.942 360.0 360.0 -48.9 360.0 19.3 -1.6 -21.3