==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ION TRANSPORT 28-JAN-00 1EDS . COMPND 2 MOLECULE: RHODOPSIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.L.YEAGLE,A.SALLOUM,A.CHOPRA,N.BHAWSAR,L.ALI . 31 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2579.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 64.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 25.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A T 0 0 75 0, 0.0 2,-1.8 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 150.2 1.9 7.5 3.2 2 2 A T - 0 0 93 1,-0.1 2,-2.3 25,-0.0 3,-0.2 -0.397 360.0 -91.4 -77.3 53.6 2.3 5.9 -0.3 3 3 A L - 0 0 22 -2,-1.8 7,-0.2 1,-0.2 -1,-0.1 -0.504 57.6-172.4 58.0 -72.7 -0.2 3.5 1.2 4 4 A Y S S- 0 0 141 -2,-2.3 4,-0.3 1,-0.1 -1,-0.2 0.966 79.7 -43.4 50.6 60.0 2.6 1.3 2.5 5 5 A T S > S- 0 0 65 13,-0.2 3,-3.2 -3,-0.2 -1,-0.1 0.973 73.8-142.2 43.3 76.2 0.0 -1.3 3.6 6 6 A S T 3 S+ 0 0 2 1,-0.3 7,-0.2 12,-0.2 4,-0.2 0.631 92.2 84.5 -44.4 -29.6 -2.3 1.3 5.0 7 7 A L T 3 S+ 0 0 123 3,-0.2 2,-2.1 1,-0.2 4,-0.4 0.842 70.5 90.8 -31.1 -45.8 -3.2 -1.1 7.9 8 8 A H S < S- 0 0 109 -3,-3.2 2,-2.2 -4,-0.3 -1,-0.2 -0.410 128.1 -56.7 -53.7 77.2 0.0 0.5 9.2 9 9 A G S S+ 0 0 72 -2,-2.1 2,-1.7 1,-0.2 3,-0.3 -0.365 135.6 77.0 81.0 -60.2 -1.8 3.4 11.0 10 10 A Y >> + 0 0 101 -2,-2.2 3,-1.6 1,-0.2 4,-0.5 -0.111 57.6 146.9 -76.0 41.9 -3.7 4.8 8.0 11 11 A F G >4 + 0 0 147 -2,-1.7 3,-2.4 -4,-0.4 -1,-0.2 0.886 64.6 53.4 -48.4 -56.9 -6.2 1.9 8.2 12 12 A V G 34 S+ 0 0 132 -3,-0.3 -1,-0.3 1,-0.3 -2,-0.1 0.732 102.3 60.8 -51.8 -30.3 -9.2 3.8 7.0 13 13 A F G <4 + 0 0 140 -3,-1.6 -1,-0.3 -7,-0.2 -2,-0.2 0.645 69.7 127.9 -76.6 -17.5 -7.3 4.9 3.9 14 14 A G << + 0 0 31 -3,-2.4 3,-0.4 -4,-0.5 5,-0.1 -0.225 32.0 174.7 -47.6 102.3 -6.8 1.2 2.6 15 15 A P S S+ 0 0 78 0, 0.0 2,-1.8 0, 0.0 -1,-0.1 0.978 70.3 26.2 -77.4 -81.4 -8.1 1.3 -1.0 16 16 A T S > S- 0 0 88 1,-0.2 2,-1.6 2,-0.1 3,-1.2 -0.199 104.4-117.2 -84.7 47.3 -7.5 -2.0 -2.9 17 17 A G T 3 S+ 0 0 66 -2,-1.8 -1,-0.2 -3,-0.4 -11,-0.1 -0.351 102.0 13.6 54.6 -84.0 -7.5 -3.9 0.4 18 18 A C T 3 S- 0 0 76 -2,-1.6 -1,-0.3 -3,-0.1 -13,-0.2 0.962 80.5-163.1 -79.8 -58.7 -3.9 -5.2 0.2 19 19 A N <>> + 0 0 0 -3,-1.2 4,-3.0 -14,-0.1 5,-1.0 0.557 46.0 129.5 79.7 14.0 -2.5 -2.9 -2.6 20 20 A L I 4>S+ 0 0 100 3,-0.2 5,-3.2 -4,-0.2 6,-0.3 0.914 73.1 47.6 -61.8 -45.4 0.5 -5.2 -3.2 21 21 A E I 45S+ 0 0 114 1,-0.2 5,-0.3 3,-0.2 -1,-0.2 0.924 120.2 38.8 -62.0 -46.7 -0.1 -5.4 -7.0 22 22 A G I 45S+ 0 0 37 -6,-0.1 -2,-0.2 3,-0.1 5,-0.2 0.945 136.3 4.0 -66.3 -53.7 -0.6 -1.6 -7.3 23 23 A F I X5S+ 0 0 77 -4,-3.0 4,-2.1 3,-0.1 -3,-0.2 0.864 124.5 45.4-110.8 -56.3 2.0 -0.3 -4.9 24 24 A F I 4XS+ 0 0 47 -5,-1.0 5,-2.4 1,-0.2 6,-0.2 0.883 112.5 52.3 -75.0 -34.7 4.4 -2.8 -3.2 25 25 A A I 4XS+ 0 0 29 -5,-3.2 5,-2.1 3,-0.2 3,-0.4 0.943 123.3 30.8 -58.2 -49.5 5.2 -4.7 -6.4 26 26 A T I >5S+ 0 0 45 -6,-0.3 2,-2.5 -5,-0.3 4,-0.8 0.990 124.7 42.8 -73.0 -72.4 6.1 -1.5 -8.1 27 27 A L I <5S+ 0 0 122 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.1 -0.412 138.8 7.2 -75.5 67.9 7.5 0.6 -5.3 28 28 A G I 45S+ 0 0 70 -2,-2.5 -3,-0.2 -3,-0.4 -1,-0.2 -0.363 130.8 44.5 160.5 -66.1 9.5 -2.3 -3.8 29 29 A G I 4