==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ION TRANSPORT 28-JAN-00 1EDW . COMPND 2 MOLECULE: RHODOPSIN; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.L.YEAGLE,A.SALLOUM,A.CHOPRA,N.BHAWSAR,L.ALI . 26 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2356.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 57.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 23.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 7.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Y > 0 0 238 0, 0.0 3,-1.7 0, 0.0 2,-0.5 0.000 360.0 360.0 360.0-175.9 -7.8 -0.1 6.6 2 2 A A T 3 + 0 0 84 1,-0.3 3,-0.3 2,-0.1 4,-0.0 -0.427 360.0 5.5 58.1-105.6 -8.0 -3.3 8.8 3 3 A G T 3 S+ 0 0 67 -2,-0.5 2,-2.2 1,-0.3 -1,-0.3 0.954 135.2 56.3 -65.4 -49.6 -6.1 -5.8 6.6 4 4 A V S < S+ 0 0 37 -3,-1.7 -1,-0.3 3,-0.1 2,-0.2 -0.483 93.7 115.4 -83.0 65.0 -5.3 -3.0 4.1 5 5 A A S > S- 0 0 23 -2,-2.2 3,-2.8 -3,-0.3 6,-0.2 -0.546 84.3 -44.8-123.8-170.9 -3.6 -1.0 6.9 6 6 A F T 3 >S+ 0 0 143 1,-0.3 5,-0.6 -2,-0.2 -2,-0.1 0.644 122.7 70.7 -31.9 -44.2 -0.1 0.3 7.9 7 7 A Y T 3 5S+ 0 0 191 -4,-0.1 -1,-0.3 3,-0.1 3,-0.2 0.841 103.5 43.4 -39.8 -48.8 1.5 -3.1 7.0 8 8 A I T X 5S+ 0 0 26 -3,-2.8 3,-2.8 -5,-0.2 4,-0.1 0.255 81.5 70.5 -83.9-153.7 0.9 -2.5 3.3 9 9 A F G > >S- 0 0 41 1,-0.3 3,-2.8 2,-0.2 5,-0.5 0.604 114.5 -94.4 61.9 7.5 1.5 0.8 1.3 10 10 A T G 3 5S- 0 0 84 1,-0.3 -1,-0.3 7,-0.2 -2,-0.1 0.863 71.8 -73.2 34.0 43.0 5.2 -0.0 1.8 11 11 A H G < S- 0 0 120 -2,-2.7 2,-2.7 -4,-0.1 3,-0.6 -0.953 87.2 -68.3-168.7 166.2 2.4 0.5 -8.0 21 21 A M T 3 S+ 0 0 130 -2,-0.3 -2,-0.1 1,-0.2 -5,-0.1 -0.323 114.9 65.5 -72.2 64.0 -1.1 1.9 -7.2 22 22 A T T >> S+ 0 0 80 -2,-2.7 4,-2.6 -4,-0.4 3,-1.7 0.290 92.3 54.8-134.7 -56.6 -3.0 -1.4 -7.3 23 23 A I T <4 S+ 0 0 70 -3,-0.6 -2,-0.1 -5,-0.4 -4,-0.1 0.824 103.5 57.1 -44.9 -46.6 -1.6 -3.4 -4.3 24 24 A P T 34 S+ 0 0 8 0, 0.0 -1,-0.3 0, 0.0 -3,-0.1 0.768 112.1 42.3 -65.9 -23.8 -2.4 -0.5 -1.8 25 25 A A T <4 0 0 76 -3,-1.7 -2,-0.2 -11,-0.0 -21,-0.1 0.915 360.0 360.0 -76.0 -48.8 -6.1 -0.8 -2.9 26 26 A F < 0 0 197 -4,-2.6 -3,-0.2 -22,-0.0 -22,-0.0 0.886 360.0 360.0 74.0 360.0 -5.8 -4.6 -2.8