==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 14-FEB-07 2ED2 . COMPND 2 MOLECULE: GENERAL TRANSCRIPTION FACTOR II-I; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.DOI-KATAYAMA,H.HIROTA,K.IZUMI,F.HAYASHI,M.YOSHIDA, . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7322.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 30.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 98 0, 0.0 2,-0.3 0, 0.0 13,-0.0 0.000 360.0 360.0 360.0 113.7 12.6 -0.9 4.9 2 2 A S - 0 0 110 1,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.837 360.0 -98.6-115.8 153.5 15.7 1.2 5.3 3 3 A S S S+ 0 0 134 -2,-0.3 2,-0.3 1,-0.1 -1,-0.0 -0.530 94.9 41.3 -72.1 129.8 16.1 4.7 6.7 4 4 A G + 0 0 63 -2,-0.3 -1,-0.1 1,-0.2 7,-0.0 -0.851 49.8 168.3 142.3-102.1 16.2 7.3 4.0 5 5 A S - 0 0 43 -2,-0.3 2,-0.5 1,-0.2 -1,-0.2 0.925 25.7-153.3 49.1 96.9 14.0 7.2 1.0 6 6 A S + 0 0 115 4,-0.1 4,-0.2 5,-0.0 -1,-0.2 -0.887 56.3 43.0-105.1 128.0 14.3 10.5 -0.8 7 7 A G S > S- 0 0 45 -2,-0.5 4,-3.3 3,-0.1 5,-0.2 0.413 78.1-113.6 107.6 117.6 11.4 11.8 -2.8 8 8 A L H > S+ 0 0 39 1,-0.3 4,-4.1 2,-0.2 5,-0.4 0.913 118.1 52.7 -38.8 -65.6 7.7 11.7 -2.0 9 9 A R H > S+ 0 0 171 1,-0.2 4,-3.3 2,-0.2 -1,-0.3 0.879 114.9 42.2 -37.3 -56.4 7.0 9.3 -4.8 10 10 A K H > S+ 0 0 128 2,-0.2 4,-2.9 -3,-0.2 -1,-0.2 0.976 117.3 46.1 -56.8 -60.6 9.7 7.0 -3.5 11 11 A M H X S+ 0 0 73 -4,-3.3 4,-4.0 1,-0.2 -2,-0.2 0.928 115.4 46.3 -46.9 -57.3 8.7 7.5 0.1 12 12 A V H X S+ 0 0 0 -4,-4.1 4,-2.7 1,-0.2 5,-0.3 0.934 110.1 54.3 -51.8 -52.1 5.0 7.0 -0.7 13 13 A D H X S+ 0 0 55 -4,-3.3 4,-2.6 -5,-0.4 -1,-0.2 0.918 114.8 40.4 -47.6 -51.4 5.9 4.0 -2.8 14 14 A Q H X S+ 0 0 72 -4,-2.9 4,-3.7 2,-0.2 -2,-0.2 0.936 109.0 60.9 -63.8 -49.0 7.7 2.5 0.2 15 15 A L H X S+ 0 0 25 -4,-4.0 4,-2.8 -5,-0.2 -2,-0.2 0.922 113.0 36.5 -41.5 -62.2 5.0 3.7 2.6 16 16 A F H X S+ 0 0 0 -4,-2.7 4,-4.4 1,-0.2 5,-0.4 0.947 112.8 57.8 -57.5 -53.3 2.4 1.6 0.9 17 17 A C H X S+ 0 0 13 -4,-2.6 4,-1.8 -5,-0.3 13,-0.4 0.902 113.6 41.6 -42.7 -51.2 4.8 -1.2 0.1 18 18 A K H >X S+ 0 0 113 -4,-3.7 4,-2.6 2,-0.2 3,-1.1 0.996 117.4 44.0 -60.3 -69.2 5.4 -1.5 3.9 19 19 A K H 3X S+ 0 0 32 -4,-2.8 4,-1.9 1,-0.3 5,-0.3 0.905 112.9 53.6 -40.2 -57.7 1.8 -1.0 5.0 20 20 A F H 3X S+ 0 0 4 -4,-4.4 4,-1.6 1,-0.2 -1,-0.3 0.857 109.9 48.9 -46.5 -42.2 0.7 -3.4 2.3 21 21 A A H S+ 0 0 4 -4,-1.8 4,-2.1 -3,-1.1 5,-0.7 0.951 102.7 61.1 -64.0 -51.5 3.2 -5.9 3.7 22 22 A E H ><5S+ 0 0 109 -4,-2.6 3,-1.1 1,-0.3 -2,-0.2 0.899 107.5 44.0 -39.1 -59.7 2.0 -5.4 7.3 23 23 A A H 3<5S+ 0 0 41 -4,-1.9 -1,-0.3 1,-0.3 -2,-0.2 0.886 113.7 51.2 -54.7 -41.7 -1.4 -6.7 6.3 24 24 A L H 3<5S- 0 0 42 -4,-1.6 -1,-0.3 -5,-0.3 -2,-0.3 0.713 115.6-124.9 -68.2 -20.5 0.3 -9.4 4.4 25 25 A G T <<5 + 0 0 64 -4,-2.1 2,-0.3 -3,-1.1 -3,-0.2 0.953 58.6 143.4 74.1 53.5 2.2 -10.1 7.5 26 26 A S < - 0 0 40 -5,-0.7 -1,-0.2 -8,-0.2 4,-0.1 -0.851 49.5-148.3-123.1 159.0 5.7 -9.8 6.1 27 27 A T S S+ 0 0 144 -2,-0.3 -1,-0.1 2,-0.1 2,-0.1 0.857 82.5 57.8 -90.7 -44.3 8.9 -8.4 7.4 28 28 A E S S- 0 0 121 1,-0.1 2,-0.2 -7,-0.1 -2,-0.1 -0.346 93.2 -98.6 -83.7 167.6 10.4 -7.2 4.1 29 29 A A - 0 0 41 -2,-0.1 2,-0.3 -8,-0.1 -11,-0.1 -0.484 39.0-170.4 -85.3 157.5 8.8 -4.7 1.8 30 30 A K - 0 0 40 -13,-0.4 2,-0.5 -16,-0.2 -9,-0.2 -0.877 29.8 -91.6-141.1 171.1 6.9 -5.8 -1.3 31 31 A A - 0 0 82 -2,-0.3 -17,-0.1 -11,-0.1 -18,-0.0 -0.781 38.4-125.0 -91.7 126.2 5.4 -4.2 -4.4 32 32 A V - 0 0 6 -2,-0.5 2,-2.4 -19,-0.2 3,-0.1 -0.601 16.8-138.7 -73.6 114.1 1.7 -3.2 -4.1 33 33 A P >> - 0 0 38 0, 0.0 4,-1.9 0, 0.0 3,-0.6 -0.477 23.7-179.3 -75.0 75.0 -0.2 -4.9 -6.9 34 34 A Y H 3> S+ 0 0 55 -2,-2.4 4,-0.9 1,-0.3 5,-0.1 0.732 79.9 61.5 -46.6 -24.1 -2.3 -1.9 -7.7 35 35 A Q H >> S+ 0 0 123 2,-0.2 4,-3.6 1,-0.2 3,-1.1 0.972 100.1 47.9 -68.1 -56.9 -3.8 -4.3 -10.3 36 36 A K H <> S+ 0 0 73 -3,-0.6 4,-0.9 1,-0.3 8,-0.4 0.864 114.2 49.6 -51.4 -39.1 -5.1 -6.9 -7.8 37 37 A F H 3< S+ 0 0 5 -4,-1.9 -1,-0.3 2,-0.2 -2,-0.2 0.739 113.4 46.9 -72.1 -24.1 -6.6 -3.9 -5.9 38 38 A E H << S+ 0 0 120 -3,-1.1 -2,-0.2 -4,-0.9 -1,-0.2 0.883 116.7 40.5 -82.9 -43.9 -8.1 -2.6 -9.1 39 39 A A H < S+ 0 0 55 -4,-3.6 -2,-0.2 1,-0.3 -3,-0.2 0.598 134.0 27.8 -79.0 -12.2 -9.5 -5.9 -10.3 40 40 A H X + 0 0 61 -4,-0.9 4,-3.5 -5,-0.4 -1,-0.3 -0.433 68.9 144.7-148.2 64.7 -10.5 -6.5 -6.7 41 41 A P T 4 S+ 0 0 82 0, 0.0 -3,-0.1 0, 0.0 5,-0.1 0.717 78.6 55.2 -75.0 -22.5 -11.1 -3.2 -5.0 42 42 A N T 4 S+ 0 0 138 -4,-0.1 3,-0.1 -3,-0.1 -5,-0.1 0.753 123.7 25.5 -79.6 -26.5 -13.9 -4.7 -2.9 43 43 A D T 4 S+ 0 0 31 1,-0.3 38,-1.5 -7,-0.2 2,-0.6 0.856 127.7 41.0 -99.3 -58.2 -11.5 -7.4 -1.7 44 44 A L E < S+A 80 0A 0 -4,-3.5 -1,-0.3 -8,-0.4 2,-0.3 -0.861 82.9 117.1 -99.3 117.3 -8.1 -5.8 -2.0 45 45 A Y E -A 79 0A 62 34,-1.3 34,-1.3 -2,-0.6 2,-0.3 -0.873 52.9-104.1-158.1-172.0 -8.0 -2.2 -0.9 46 46 A V E -A 78 0A 13 -2,-0.3 2,-0.3 32,-0.2 32,-0.3 -0.915 23.0-157.1-129.0 155.1 -6.6 0.3 1.6 47 47 A E E +A 77 0A 104 30,-4.3 30,-3.2 -2,-0.3 28,-0.0 -0.853 67.5 41.5-128.9 164.0 -8.0 2.1 4.6 48 48 A G S S+ 0 0 32 -2,-0.3 27,-0.2 28,-0.3 -1,-0.1 0.796 78.8 155.5 70.1 29.9 -7.3 5.3 6.6 49 49 A L - 0 0 47 -3,-0.2 -1,-0.2 1,-0.1 2,-0.1 -0.415 48.6 -90.0 -85.4 164.1 -6.7 7.1 3.3 50 50 A P > - 0 0 20 0, 0.0 3,-1.0 0, 0.0 -1,-0.1 -0.435 47.1 -99.8 -75.0 148.0 -7.0 10.9 2.8 51 51 A E T 3 S+ 0 0 168 1,-0.3 0, 0.0 -2,-0.1 0, 0.0 -0.361 107.3 18.0 -67.2 145.2 -10.3 12.4 1.8 52 52 A N T 3 S+ 0 0 153 1,-0.1 -1,-0.3 -3,-0.1 0, 0.0 0.803 106.8 107.6 62.8 29.6 -10.7 13.2 -1.9 53 53 A I < - 0 0 19 -3,-1.0 -1,-0.1 8,-0.0 -4,-0.0 -0.918 54.5-159.3-143.9 112.4 -7.8 11.0 -2.5 54 54 A P - 0 0 74 0, 0.0 2,-0.6 0, 0.0 7,-0.0 0.071 32.4 -94.0 -75.0-169.3 -8.1 7.6 -4.1 55 55 A F + 0 0 42 -6,-0.1 2,-0.2 -21,-0.0 -6,-0.0 -0.855 67.4 127.1-116.7 94.8 -5.6 4.7 -4.0 56 56 A R - 0 0 121 -2,-0.6 5,-0.0 1,-0.2 4,-0.0 -0.746 61.5 -58.5-134.8-178.6 -3.2 4.7 -6.9 57 57 A S >> - 0 0 28 -2,-0.2 4,-1.7 1,-0.1 3,-0.9 -0.147 43.3-121.6 -60.8 159.5 0.5 4.6 -7.6 58 58 A P T 34 S+ 0 0 5 0, 0.0 8,-0.1 0, 0.0 -1,-0.1 0.725 110.1 69.7 -75.0 -23.3 2.7 7.4 -6.2 59 59 A S T 34 S+ 0 0 83 1,-0.2 -2,-0.1 -50,-0.1 -50,-0.0 0.543 106.9 40.7 -70.4 -6.3 3.8 8.3 -9.7 60 60 A W T <4 S+ 0 0 183 -3,-0.9 -1,-0.2 2,-0.1 -3,-0.0 0.813 90.9 95.5-103.9 -56.0 0.3 9.6 -10.1 61 61 A Y S < S- 0 0 10 -4,-1.7 -52,-0.1 4,-0.1 -8,-0.0 0.011 82.2-108.1 -38.5 139.9 -0.4 11.3 -6.8 62 62 A G > - 0 0 23 1,-0.1 4,-2.4 4,-0.1 5,-0.1 -0.038 28.6-101.1 -66.4 174.8 0.3 15.0 -6.9 63 63 A I H > S+ 0 0 134 2,-0.2 4,-1.1 1,-0.2 5,-0.1 0.937 126.8 34.6 -63.3 -48.8 3.2 16.7 -5.2 64 64 A P H > S+ 0 0 81 0, 0.0 4,-2.6 0, 0.0 -1,-0.2 0.812 113.4 61.9 -75.0 -32.2 1.1 17.8 -2.3 65 65 A R H > S+ 0 0 117 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.947 99.7 54.0 -57.5 -52.8 -1.0 14.7 -2.5 66 66 A L H >X S+ 0 0 2 -4,-2.4 4,-2.7 2,-0.2 3,-0.6 0.949 111.1 44.0 -44.7 -68.4 1.9 12.5 -1.7 67 67 A E H 3X S+ 0 0 106 -4,-1.1 4,-3.5 1,-0.3 5,-0.3 0.916 109.6 56.4 -42.2 -59.7 2.9 14.3 1.5 68 68 A K H 3X S+ 0 0 111 -4,-2.6 4,-1.5 1,-0.3 -1,-0.3 0.877 111.0 45.0 -40.0 -49.5 -0.8 14.5 2.5 69 69 A I H << S+ 0 0 0 -4,-2.7 3,-0.4 -3,-0.6 -1,-0.3 0.927 110.9 52.6 -62.1 -46.9 -0.8 10.7 2.3 70 70 A I H >< S+ 0 0 40 -4,-2.7 3,-1.1 1,-0.3 -2,-0.2 0.883 105.2 56.3 -55.6 -40.9 2.5 10.5 4.1 71 71 A Q H 3< S+ 0 0 125 -4,-3.5 3,-0.4 1,-0.3 -1,-0.3 0.874 118.0 32.8 -58.7 -39.5 1.0 12.7 6.8 72 72 A V T >X S+ 0 0 18 -4,-1.5 3,-1.8 -3,-0.4 4,-1.1 0.240 90.7 102.9 -99.7 9.8 -1.7 10.1 7.2 73 73 A G T <4 S+ 0 0 4 -3,-1.1 -1,-0.2 1,-0.3 -2,-0.2 0.549 76.1 60.4 -68.6 -6.8 0.7 7.3 6.3 74 74 A N T 34 S+ 0 0 148 -3,-0.4 -1,-0.3 -4,-0.2 -2,-0.1 0.538 110.4 38.8 -95.1 -11.3 0.7 6.6 10.0 75 75 A R T <4 S+ 0 0 174 -3,-1.8 -2,-0.2 -27,-0.2 -1,-0.1 0.456 89.7 119.7-113.0 -9.3 -3.0 5.9 10.0 76 76 A I < - 0 0 10 -4,-1.1 2,-0.3 -7,-0.2 -28,-0.3 -0.139 44.0-166.4 -55.7 154.2 -3.1 4.1 6.7 77 77 A K E -A 47 0A 136 -30,-3.2 -30,-4.3 2,-0.0 2,-0.5 -0.993 13.7-148.8-147.4 147.9 -4.3 0.5 6.7 78 78 A F E -A 46 0A 13 -2,-0.3 2,-0.5 -32,-0.3 -32,-0.2 -0.976 9.1-161.2-124.7 120.8 -4.3 -2.4 4.3 79 79 A V E -A 45 0A 31 -34,-1.3 -34,-1.3 -2,-0.5 2,-0.6 -0.866 4.3-164.2-102.9 130.4 -7.0 -5.0 4.2 80 80 A I E +A 44 0A 29 -2,-0.5 -36,-0.2 1,-0.2 -37,-0.0 -0.661 19.5 164.2-113.0 72.9 -6.3 -8.3 2.5 81 81 A K S S+ 0 0 121 -38,-1.5 -1,-0.2 -2,-0.6 -37,-0.1 0.875 84.6 15.6 -54.5 -39.8 -9.8 -9.7 2.0 82 82 A R > + 0 0 127 -3,-0.2 3,-0.5 -42,-0.1 -1,-0.3 -0.785 63.5 167.4-142.0 93.6 -8.2 -12.2 -0.4 83 83 A P G >> S+ 0 0 67 0, 0.0 3,-2.1 0, 0.0 4,-0.9 0.753 73.2 76.5 -75.0 -25.9 -4.4 -12.6 -0.3 84 84 A E G >4 S+ 0 0 131 1,-0.3 3,-0.8 2,-0.2 -2,-0.0 0.841 80.7 70.2 -51.8 -36.6 -4.6 -15.7 -2.4 85 85 A L G <4 S+ 0 0 40 -3,-0.5 -1,-0.3 1,-0.3 -49,-0.0 0.847 98.0 50.3 -49.7 -37.1 -5.2 -13.3 -5.4 86 86 A L G <4 S- 0 0 37 -3,-2.1 -1,-0.3 -4,-0.2 -2,-0.2 0.822 99.3-152.3 -70.7 -32.4 -1.6 -12.4 -4.9 87 87 A T << - 0 0 105 -4,-0.9 -3,-0.1 -3,-0.8 -2,-0.1 0.985 55.7 -41.6 55.0 79.6 -0.7 -16.0 -4.9 88 88 A H - 0 0 173 -5,-0.1 3,-0.1 1,-0.0 0, 0.0 0.099 59.1-129.7 59.3 179.1 2.5 -16.0 -2.8 89 89 A S S S+ 0 0 63 1,-0.0 -1,-0.0 -59,-0.0 -59,-0.0 0.589 74.2 83.7-127.5 -62.4 5.1 -13.3 -3.2 90 90 A T + 0 0 118 1,-0.1 -1,-0.0 2,-0.0 0, 0.0 -0.095 40.9 162.5 -48.9 146.9 8.6 -14.8 -3.6 91 91 A T - 0 0 106 2,-0.2 -1,-0.1 -3,-0.1 -3,-0.0 -0.148 69.6 -67.0-167.3 55.3 9.4 -15.8 -7.2 92 92 A E S S+ 0 0 189 1,-0.2 2,-0.3 2,-0.0 -2,-0.0 0.978 90.8 130.0 51.7 78.4 13.2 -16.3 -7.5 93 93 A V + 0 0 82 4,-0.0 2,-0.3 3,-0.0 -1,-0.2 -0.921 31.8 178.6-162.1 133.2 14.3 -12.7 -7.1 94 94 A S + 0 0 130 -2,-0.3 -2,-0.0 2,-0.0 0, 0.0 -0.778 60.0 10.7-142.4 92.9 16.9 -11.0 -5.0 95 95 A G S S- 0 0 50 -2,-0.3 2,-1.0 2,-0.1 -1,-0.0 -0.553 100.8 -45.4 127.0 168.6 17.3 -7.2 -5.4 96 96 A P - 0 0 127 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.606 58.6-164.2 -75.1 101.2 15.5 -4.3 -7.0 97 97 A S - 0 0 95 -2,-1.0 2,-3.0 1,-0.1 -2,-0.1 -0.758 67.9 -19.1 -91.1 129.6 14.7 -5.5 -10.5 98 98 A S 0 0 150 -2,-0.5 -1,-0.1 1,-0.3 0, 0.0 -0.328 360.0 360.0 74.7 -59.1 13.7 -2.9 -13.1 99 99 A G 0 0 97 -2,-3.0 -1,-0.3 0, 0.0 -2,-0.1 0.301 360.0 360.0 159.7 360.0 13.0 -0.4 -10.3