==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER METAL BINDING PROTEIN 15-FEB-07 2EEJ . COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.N.NIRAULA,T.TOMIZAWA,K.KOSHIBA,M.INOUE,T.KIGAWA, . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6800.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 54.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 18.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 3 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 132 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-122.3 -11.6 3.9 -35.0 2 2 A S - 0 0 136 2,-0.0 2,-0.3 1,-0.0 0, 0.0 -0.665 360.0-164.7 -84.5 132.1 -8.7 3.8 -32.6 3 3 A S + 0 0 125 -2,-0.4 -1,-0.0 2,-0.0 0, 0.0 -0.795 37.0 102.2-115.3 158.0 -9.3 2.2 -29.2 4 4 A G - 0 0 82 -2,-0.3 2,-0.2 2,-0.0 -2,-0.0 0.417 35.7-176.1 130.8 87.7 -7.4 2.2 -26.0 5 5 A S - 0 0 126 1,-0.0 2,-0.2 0, 0.0 -2,-0.0 -0.700 27.3-109.3-106.5 159.4 -8.4 4.3 -23.0 6 6 A S + 0 0 121 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 -0.532 36.2 166.7 -86.1 152.7 -6.6 4.8 -19.6 7 7 A G + 0 0 61 1,-0.3 -1,-0.1 -2,-0.2 0, 0.0 0.418 50.8 22.4-125.2 -95.0 -7.9 3.4 -16.4 8 8 A P S S- 0 0 69 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 0.070 73.9-114.2 -69.8-174.3 -5.9 3.1 -13.1 9 9 A K E -A 86 0A 84 77,-1.3 77,-1.0 -3,-0.1 2,-0.6 -0.963 10.6-137.2-129.8 146.4 -2.9 5.2 -12.1 10 10 A L E +A 85 0A 91 -2,-0.3 2,-0.4 75,-0.1 75,-0.1 -0.896 27.6 174.3-106.9 112.9 0.7 4.4 -11.5 11 11 A C E -A 84 0A 6 73,-0.9 73,-1.1 -2,-0.6 2,-0.6 -0.942 21.1-146.4-120.5 140.0 2.3 6.0 -8.4 12 12 A R E -A 83 0A 185 -2,-0.4 71,-0.2 71,-0.2 2,-0.2 -0.912 15.0-150.8-109.1 116.0 5.7 5.5 -7.0 13 13 A L E -A 82 0A 3 69,-2.1 69,-1.0 -2,-0.6 2,-0.4 -0.482 4.0-155.5 -82.3 153.5 6.1 5.7 -3.2 14 14 A A E -A 81 0A 63 67,-0.2 67,-0.2 -2,-0.2 2,-0.1 -0.926 17.4-128.1-135.8 110.3 9.3 6.8 -1.5 15 15 A K + 0 0 72 65,-1.5 5,-0.1 -2,-0.4 3,-0.1 -0.337 42.6 153.8 -56.9 123.1 10.2 5.8 2.1 16 16 A G - 0 0 60 3,-0.6 2,-0.3 1,-0.4 -1,-0.2 0.722 56.7 -3.1-115.4 -70.7 11.0 9.0 4.0 17 17 A E S S- 0 0 160 2,-0.6 -1,-0.4 1,-0.1 4,-0.0 -0.972 125.7 -7.0-132.8 146.8 10.4 8.8 7.8 18 18 A N S S- 0 0 167 -2,-0.3 -1,-0.1 -3,-0.1 2,-0.1 0.811 118.8 -77.8 39.6 36.4 9.0 6.1 10.1 19 19 A G S S- 0 0 22 -3,-0.0 -2,-0.6 57,-0.0 -3,-0.6 -0.343 94.8 -9.1 76.6-159.8 8.1 4.3 6.8 20 20 A Y - 0 0 27 1,-0.1 -5,-0.1 -5,-0.1 -2,-0.0 -0.610 60.3-139.3 -77.6 125.1 5.2 5.2 4.6 21 21 A G S S+ 0 0 23 -2,-0.4 -1,-0.1 18,-0.1 19,-0.1 0.909 85.0 70.6 -47.1 -51.3 2.9 7.8 6.2 22 22 A F S S- 0 0 8 17,-0.1 2,-0.2 16,-0.1 15,-0.2 -0.172 72.4-156.2 -65.4 162.4 -0.2 6.0 4.9 23 23 A H E -D 36 0B 93 13,-2.2 13,-2.8 2,-0.0 2,-0.3 -0.807 12.2-111.1-134.4 175.2 -1.3 2.6 6.3 24 24 A L E -D 35 0B 28 -2,-0.2 2,-0.4 11,-0.2 11,-0.2 -0.798 20.6-164.1-111.5 153.9 -3.3 -0.5 5.4 25 25 A N - 0 0 68 9,-1.4 2,-0.6 -2,-0.3 9,-0.5 -0.971 17.7-134.0-141.8 123.5 -6.6 -1.7 6.7 26 26 A A - 0 0 66 -2,-0.4 2,-0.5 7,-0.1 7,-0.1 -0.649 22.5-160.0 -78.9 116.8 -8.1 -5.2 6.3 27 27 A I > - 0 0 70 -2,-0.6 2,-0.8 5,-0.4 3,-0.7 -0.870 15.0-132.3-102.7 123.7 -11.8 -4.9 5.3 28 28 A R T 3 S+ 0 0 241 -2,-0.5 -2,-0.0 1,-0.2 -1,-0.0 -0.619 92.2 28.2 -76.1 109.0 -14.0 -7.9 5.9 29 29 A G T 3 S+ 0 0 70 -2,-0.8 -1,-0.2 1,-0.3 -2,-0.0 -0.139 106.7 70.6 136.4 -41.0 -16.0 -8.5 2.6 30 30 A L S < S- 0 0 109 -3,-0.7 -1,-0.3 2,-0.1 -3,-0.3 -0.866 77.2-118.8-112.3 144.0 -13.7 -7.2 -0.1 31 31 A P S S+ 0 0 78 0, 0.0 34,-0.2 0, 0.0 33,-0.1 -0.095 74.5 21.0 -69.7 172.7 -10.4 -8.7 -1.4 32 32 A G S S- 0 0 15 32,-1.8 -5,-0.4 34,-0.5 2,-0.2 -0.003 92.4 -75.5 59.8-171.4 -7.0 -7.0 -1.2 33 33 A S E -E 55 0C 1 22,-0.6 22,-1.2 -7,-0.1 2,-0.3 -0.483 35.8-134.4-113.4-175.1 -6.2 -4.2 1.2 34 34 A F E -E 54 0C 34 -9,-0.5 -9,-1.4 20,-0.2 2,-0.4 -0.990 20.2-109.7-144.4 150.9 -7.1 -0.4 1.4 35 35 A I E +D 24 0B 1 18,-3.3 2,-0.3 -2,-0.3 -11,-0.2 -0.681 44.5 162.4 -84.3 128.2 -5.2 2.8 2.1 36 36 A K E +D 23 0B 87 -13,-2.8 -13,-2.2 -2,-0.4 16,-0.1 -0.995 50.9 28.0-145.9 149.2 -6.0 4.5 5.4 37 37 A E S S+ 0 0 123 -2,-0.3 2,-0.9 1,-0.2 -1,-0.1 0.906 70.3 171.7 68.9 42.9 -4.5 7.1 7.7 38 38 A V - 0 0 22 -16,-0.2 -1,-0.2 -3,-0.1 -16,-0.1 -0.767 22.8-144.8 -90.5 106.7 -2.7 8.8 4.8 39 39 A Q > - 0 0 148 -2,-0.9 3,-0.9 1,-0.1 2,-0.7 -0.333 20.4-109.9 -68.7 150.1 -1.2 12.1 6.1 40 40 A K T 3 S+ 0 0 164 1,-0.2 -1,-0.1 5,-0.1 -2,-0.0 -0.733 101.6 25.3 -86.2 116.4 -1.1 15.1 3.7 41 41 A G T 3 S+ 0 0 49 -2,-0.7 -1,-0.2 1,-0.3 -2,-0.0 0.226 96.9 108.6 118.0 -12.1 2.4 15.9 2.6 42 42 A G S <> S- 0 0 17 -3,-0.9 4,-1.7 1,-0.0 -1,-0.3 0.084 89.5 -80.9 -80.6-163.4 4.0 12.5 3.0 43 43 A P H > S+ 0 0 27 0, 0.0 4,-1.5 0, 0.0 5,-0.1 0.864 126.7 48.5 -69.8 -37.8 5.1 10.0 0.3 44 44 A A H >>S+ 0 0 1 2,-0.2 4,-1.7 3,-0.1 5,-1.3 0.992 113.4 42.8 -66.3 -63.7 1.6 8.7 -0.3 45 45 A D H >45S+ 0 0 52 -6,-0.7 3,-1.1 1,-0.2 -1,-0.1 0.934 112.6 54.0 -47.7 -56.3 -0.3 12.0 -0.7 46 46 A L H 3<5S+ 0 0 137 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.884 109.1 49.2 -46.7 -44.9 2.5 13.4 -2.8 47 47 A A H 3<5S- 0 0 29 -4,-1.5 -1,-0.3 -3,-0.3 -2,-0.2 0.794 128.3-101.0 -66.9 -28.5 2.1 10.4 -5.1 48 48 A G T <<5 + 0 0 35 -4,-1.7 2,-0.3 -3,-1.1 -3,-0.2 0.763 68.5 149.5 109.3 40.9 -1.6 11.0 -5.2 49 49 A L < - 0 0 3 -5,-1.3 -1,-0.2 -6,-0.1 2,-0.2 -0.810 23.1-166.0-107.2 147.1 -3.0 8.4 -2.8 50 50 A E - 0 0 64 -2,-0.3 3,-0.5 4,-0.0 -15,-0.1 -0.631 38.3-102.3-120.9 179.9 -6.2 8.7 -0.7 51 51 A D S S+ 0 0 78 1,-0.2 -14,-0.1 -2,-0.2 39,-0.0 0.324 121.6 50.0 -85.5 8.0 -7.7 7.0 2.3 52 52 A E S S+ 0 0 56 38,-0.2 37,-0.3 37,-0.1 -1,-0.2 0.434 83.2 113.3-120.8 -8.3 -10.1 5.3 -0.1 53 53 A D - 0 0 10 -3,-0.5 -18,-3.3 -18,-0.1 2,-0.3 -0.337 54.4-145.9 -67.3 147.7 -7.6 4.0 -2.6 54 54 A V E -E 34 0C 32 -20,-0.2 2,-0.8 35,-0.2 33,-0.4 -0.839 12.8-120.2-117.1 154.8 -7.1 0.2 -2.9 55 55 A I E +E 33 0C 1 -22,-1.2 -22,-0.6 -2,-0.3 31,-0.2 -0.821 34.2 165.3 -97.7 105.5 -4.1 -1.9 -3.6 56 56 A I - 0 0 32 29,-3.1 7,-1.2 -2,-0.8 8,-0.3 0.885 68.0 -5.9 -83.5 -43.5 -4.6 -4.0 -6.7 57 57 A E E -BC 62 85A 40 28,-0.5 28,-0.8 5,-0.3 2,-0.2 -0.822 55.9-148.5-141.8-179.9 -1.0 -5.0 -7.3 58 58 A V E S- C 0 84A 0 3,-1.4 26,-0.2 -2,-0.2 -3,-0.0 -0.762 78.9 -10.3-161.4 109.1 2.6 -4.4 -6.0 59 59 A N S S- 0 0 83 24,-0.5 25,-0.1 -2,-0.2 3,-0.1 0.852 134.6 -43.0 70.8 35.5 5.8 -4.5 -8.0 60 60 A G S S+ 0 0 67 1,-0.2 2,-0.3 23,-0.1 -1,-0.1 0.975 113.7 109.4 74.6 58.4 4.0 -6.0 -11.0 61 61 A V - 0 0 49 0, 0.0 -3,-1.4 0, 0.0 2,-1.1 -0.889 69.1-120.4-165.7 131.3 1.8 -8.6 -9.4 62 62 A N B +B 57 0A 106 -2,-0.3 -5,-0.3 -5,-0.2 3,-0.2 -0.625 32.4 171.4 -77.6 100.6 -1.9 -9.0 -8.8 63 63 A V + 0 0 1 -7,-1.2 -6,-0.2 -2,-1.1 -1,-0.1 -0.092 41.8 113.6-100.2 33.6 -2.2 -9.2 -5.0 64 64 A L S S+ 0 0 63 -8,-0.3 -32,-1.8 1,-0.2 -1,-0.2 0.990 83.0 34.3 -66.7 -62.5 -6.0 -9.0 -5.1 65 65 A D S S+ 0 0 142 -3,-0.2 -1,-0.2 -34,-0.2 -2,-0.1 0.829 100.1 103.5 -62.6 -32.3 -6.8 -12.5 -3.8 66 66 A E S S- 0 0 62 -4,-0.2 -34,-0.5 1,-0.1 -3,-0.0 -0.151 76.8-115.5 -52.7 144.0 -3.7 -12.3 -1.6 67 67 A P > - 0 0 66 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.088 28.2 -97.6 -69.8-172.8 -4.4 -11.7 2.1 68 68 A Y H > S+ 0 0 102 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.758 122.7 54.5 -80.9 -26.5 -3.4 -8.6 4.1 69 69 A E H > S+ 0 0 155 2,-0.2 4,-1.6 3,-0.2 -1,-0.2 0.821 111.6 44.4 -75.7 -32.4 -0.4 -10.4 5.6 70 70 A K H > S+ 0 0 118 2,-0.2 4,-1.8 3,-0.1 -2,-0.2 0.939 114.8 45.9 -76.6 -50.5 0.9 -11.3 2.1 71 71 A V H X S+ 0 0 1 -4,-1.7 4,-1.7 2,-0.2 -2,-0.2 0.920 115.1 48.2 -58.5 -46.4 0.3 -7.9 0.5 72 72 A V H X S+ 0 0 25 -4,-1.6 4,-3.0 1,-0.2 3,-0.3 0.953 107.6 53.8 -59.8 -52.7 1.8 -6.0 3.4 73 73 A D H X S+ 0 0 102 -4,-1.6 4,-3.2 1,-0.2 5,-0.3 0.865 107.0 54.1 -50.3 -39.9 4.9 -8.2 3.5 74 74 A R H X S+ 0 0 117 -4,-1.8 4,-2.0 1,-0.2 -1,-0.2 0.917 111.8 42.7 -62.3 -44.8 5.5 -7.4 -0.1 75 75 A I H X S+ 0 0 8 -4,-1.7 4,-0.7 -3,-0.3 -2,-0.2 0.859 116.7 48.4 -70.0 -36.3 5.4 -3.7 0.5 76 76 A Q H >< S+ 0 0 120 -4,-3.0 3,-0.8 1,-0.2 -2,-0.2 0.931 112.9 46.2 -69.5 -47.3 7.5 -4.0 3.7 77 77 A S H 3< S+ 0 0 96 -4,-3.2 -2,-0.2 -5,-0.2 -1,-0.2 0.898 94.4 77.8 -62.5 -41.7 10.2 -6.2 2.0 78 78 A S H 3< S- 0 0 39 -4,-2.0 2,-0.6 -5,-0.3 3,-0.3 0.832 92.7-148.1 -34.8 -45.7 10.3 -3.9 -1.0 79 79 A G << - 0 0 26 -3,-0.8 -1,-0.2 -4,-0.7 3,-0.1 -0.934 54.4 -14.9 115.9-116.9 12.4 -1.6 1.1 80 80 A K S S+ 0 0 138 -2,-0.6 -65,-1.5 1,-0.1 2,-0.3 0.903 127.3 45.2 -91.6 -54.6 12.2 2.2 0.6 81 81 A N E +A 14 0A 116 -3,-0.3 2,-0.3 -67,-0.2 -67,-0.2 -0.689 65.6 169.5 -94.3 145.9 10.5 2.5 -2.7 82 82 A V E -A 13 0A 4 -69,-1.0 -69,-2.1 -2,-0.3 2,-0.3 -0.969 23.3-139.3-157.3 138.6 7.4 0.5 -3.7 83 83 A T E +A 12 0A 40 -2,-0.3 -24,-0.5 -71,-0.2 2,-0.3 -0.772 20.7 178.4-101.5 144.8 4.9 0.5 -6.6 84 84 A L E -AC 11 58A 2 -73,-1.1 -73,-0.9 -2,-0.3 2,-0.7 -0.985 23.9-136.6-148.3 134.0 1.1 -0.0 -6.1 85 85 A L E -AC 10 57A 27 -28,-0.8 -29,-3.1 -2,-0.3 -28,-0.5 -0.811 24.2-170.3 -94.5 114.5 -1.8 -0.0 -8.6 86 86 A V E +A 9 0A 4 -77,-1.0 -77,-1.3 -2,-0.7 2,-0.3 -0.873 13.6 159.2-107.8 136.4 -4.8 1.8 -7.3 87 87 A C + 0 0 60 -2,-0.4 2,-0.4 -33,-0.4 3,-0.1 -0.911 39.5 37.9-158.0 125.9 -8.2 1.8 -8.9 88 88 A G S S+ 0 0 59 -2,-0.3 -35,-0.1 1,-0.1 -2,-0.0 -0.990 85.5 43.2 143.3-132.8 -11.7 2.5 -7.7 89 89 A K + 0 0 123 -2,-0.4 -35,-0.2 -37,-0.3 -1,-0.1 -0.027 47.8 170.1 -47.5 153.3 -13.1 5.1 -5.2 90 90 A K - 0 0 148 1,-0.2 2,-0.3 -37,-0.1 -38,-0.2 0.558 56.0 -27.1-132.5 -55.9 -11.8 8.6 -5.6 91 91 A S - 0 0 85 -39,-0.1 -1,-0.2 -41,-0.1 3,-0.1 -0.961 59.5-104.4-167.3 150.0 -13.7 11.1 -3.4 92 92 A G - 0 0 40 -2,-0.3 2,-0.5 1,-0.2 0, 0.0 -0.052 59.6 -64.8 -70.9 177.7 -17.2 11.6 -1.9 93 93 A P + 0 0 145 0, 0.0 2,-0.3 0, 0.0 -1,-0.2 -0.530 62.5 175.7 -69.8 115.2 -19.9 13.9 -3.2 94 94 A S - 0 0 109 -2,-0.5 -3,-0.0 1,-0.1 0, 0.0 -0.917 29.3-155.9-123.9 149.7 -18.7 17.5 -2.8 95 95 A S 0 0 137 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.929 360.0 360.0 -86.2 -55.5 -20.2 20.9 -3.8 96 96 A G 0 0 111 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.372 360.0 360.0-136.9 360.0 -17.1 23.1 -4.0