==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSFERASE 25-FEB-00 1EIK . COMPND 2 MOLECULE: RNA POLYMERASE SUBUNIT RPB5; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER . AUTHOR A.YEE,V.BOOTH,A.DHARAMSI,A.ENGEL,A.M.EDWARDS,C.H.ARROWSMITH, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6544.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 70.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 213 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 175.6 -25.1 -10.5 0.5 2 2 A K + 0 0 202 2,-0.1 3,-0.1 1,-0.0 0, 0.0 0.906 360.0 127.2 56.2 44.5 -23.5 -9.9 3.9 3 3 A R - 0 0 223 1,-0.4 2,-0.3 0, 0.0 -1,-0.0 0.911 69.6 -12.2 -92.6 -67.2 -20.8 -12.5 3.2 4 4 A E - 0 0 181 2,-0.0 -1,-0.4 0, 0.0 2,-0.3 -0.841 58.2-161.0-133.3 170.2 -17.5 -10.9 3.9 5 5 A I - 0 0 162 -2,-0.3 3,-0.1 -3,-0.1 4,-0.1 -0.859 15.3-169.5-143.3 176.9 -16.1 -7.4 4.5 6 6 A L - 0 0 110 -2,-0.3 2,-2.9 4,-0.0 -2,-0.0 -0.116 57.0 -93.8-169.3 55.7 -12.8 -5.4 4.5 7 7 A K S S+ 0 0 187 2,-0.0 2,-0.4 0, 0.0 -1,-0.0 -0.352 112.9 46.3 64.3 -74.6 -13.2 -2.0 6.1 8 8 A H S S- 0 0 134 -2,-2.9 0, 0.0 1,-0.1 0, 0.0 -0.822 73.1-145.4-102.3 138.1 -14.0 -0.3 2.8 9 9 A Q S S+ 0 0 189 -2,-0.4 -1,-0.1 -4,-0.1 -2,-0.0 0.967 85.6 45.5 -62.3 -55.1 -16.4 -1.6 0.2 10 10 A L S S- 0 0 151 1,-0.0 -2,-0.1 0, 0.0 -4,-0.0 -0.105 82.4-128.8 -79.7-177.4 -14.5 -0.4 -2.8 11 11 A V - 0 0 93 1,-0.0 -2,-0.0 3,-0.0 -1,-0.0 -0.981 12.9-119.3-138.2 149.5 -10.7 -0.7 -3.4 12 12 A P - 0 0 53 0, 0.0 2,-0.7 0, 0.0 49,-0.1 -0.118 42.7 -83.9 -77.0 178.3 -7.9 1.7 -4.4 13 13 A E E -A 60 0A 129 47,-0.8 47,-0.9 2,-0.0 2,-0.6 -0.778 41.2-158.1 -90.6 114.0 -5.7 1.5 -7.5 14 14 A H E -A 59 0A 92 -2,-0.7 2,-0.3 45,-0.2 45,-0.2 -0.828 13.8-179.4 -96.9 117.7 -2.8 -0.8 -7.0 15 15 A V E -A 58 0A 69 43,-2.4 43,-3.8 -2,-0.6 2,-0.6 -0.877 25.5-124.8-115.9 147.8 0.2 -0.2 -9.2 16 16 A I E -A 57 0A 68 -2,-0.3 2,-0.3 41,-0.2 41,-0.2 -0.818 27.9-164.1 -95.7 124.6 3.5 -2.0 -9.4 17 17 A L E -A 56 0A 7 39,-4.1 39,-1.2 -2,-0.6 2,-0.2 -0.789 20.4-117.6-107.1 149.9 6.7 0.1 -9.0 18 18 A N >> - 0 0 87 -2,-0.3 4,-4.1 37,-0.2 5,-0.5 -0.584 33.7-111.2 -80.9 144.2 10.3 -0.7 -9.8 19 19 A E H >5S+ 0 0 111 35,-0.3 4,-0.9 1,-0.2 -1,-0.1 0.825 122.9 46.0 -45.5 -31.7 12.6 -0.7 -6.8 20 20 A S H >5S+ 0 0 82 2,-0.2 4,-1.8 3,-0.1 -1,-0.2 0.945 116.0 42.2 -76.1 -50.9 14.1 2.4 -8.4 21 21 A E H >5S+ 0 0 76 1,-0.2 4,-1.9 2,-0.2 -2,-0.2 0.897 117.5 47.4 -61.8 -44.1 10.8 4.1 -9.2 22 22 A A H X5S+ 0 0 0 -4,-4.1 4,-2.8 1,-0.2 -1,-0.2 0.802 106.4 61.3 -68.8 -27.4 9.3 3.2 -5.9 23 23 A K H XS+ 0 0 2 -4,-2.8 5,-1.1 1,-0.2 -1,-0.2 0.939 120.3 37.0 -51.7 -52.4 8.7 6.7 -1.2 27 27 A K H ><5S+ 0 0 89 -4,-2.1 3,-1.2 3,-0.3 -1,-0.2 0.836 113.0 58.2 -71.7 -31.1 11.4 9.3 -0.4 28 28 A E H 3<5S+ 0 0 162 -4,-3.3 -2,-0.2 1,-0.3 -1,-0.2 0.879 105.4 51.0 -62.4 -35.7 9.5 11.8 -2.6 29 29 A L T 3<5S- 0 0 79 -4,-3.0 -1,-0.3 2,-0.2 -2,-0.2 0.521 131.9-100.2 -76.5 -8.4 6.6 11.2 -0.3 30 30 A D T < 5S+ 0 0 140 -3,-1.2 2,-0.3 1,-0.3 -3,-0.3 0.884 91.2 74.9 86.9 48.2 9.0 11.8 2.7 31 31 A A < - 0 0 13 -5,-1.1 -1,-0.3 -6,-0.1 -2,-0.2 -0.980 66.7-122.8-172.7 167.7 9.8 8.2 3.6 32 32 A H >> - 0 0 57 -2,-0.3 4,-2.4 -5,-0.1 3,-0.7 -0.818 31.0-113.3-123.4 156.3 11.7 5.0 2.8 33 33 A P T 34 S+ 0 0 10 0, 0.0 41,-0.2 0, 0.0 -1,-0.1 0.853 116.1 64.0 -57.5 -32.5 10.4 1.5 2.1 34 34 A E T 34 S+ 0 0 133 1,-0.2 4,-0.1 3,-0.0 40,-0.0 0.882 110.0 40.0 -57.5 -37.0 12.2 0.4 5.3 35 35 A Q T <4 S+ 0 0 155 -3,-0.7 -1,-0.2 2,-0.1 3,-0.1 0.974 105.6 73.6 -74.2 -59.4 9.8 2.6 7.1 36 36 A L S < S- 0 0 38 -4,-2.4 2,-0.3 1,-0.1 37,-0.1 0.070 99.9 -83.9 -49.2 166.2 6.7 1.9 5.2 37 37 A P - 0 0 54 0, 0.0 37,-0.9 0, 0.0 2,-0.5 -0.574 40.1-157.7 -80.9 138.7 4.9 -1.5 5.7 38 38 A K - 0 0 57 -2,-0.3 2,-0.4 35,-0.2 37,-0.2 -0.968 2.6-152.3-120.7 126.4 6.1 -4.5 3.8 39 39 A I - 0 0 38 -2,-0.5 37,-1.2 35,-0.4 34,-0.0 -0.811 25.9-112.0 -99.6 133.9 3.9 -7.6 3.1 40 40 A K B > -c 76 0B 93 -2,-0.4 3,-0.8 35,-0.2 6,-0.6 -0.236 19.1-121.4 -61.6 149.5 5.5 -11.0 2.7 41 41 A T T 3 S+ 0 0 33 35,-1.4 6,-0.2 1,-0.3 -1,-0.1 0.727 117.3 60.1 -64.0 -19.3 5.4 -12.7 -0.7 42 42 A T T 3 S+ 0 0 108 4,-0.1 -1,-0.3 3,-0.1 35,-0.1 0.831 94.3 81.6 -74.7 -30.9 3.6 -15.5 1.2 43 43 A D S X> S- 0 0 73 -3,-0.8 3,-1.9 1,-0.1 4,-0.8 -0.280 105.5 -98.9 -71.6 154.8 0.9 -13.0 2.0 44 44 A P H 3> S+ 0 0 95 0, 0.0 4,-3.1 0, 0.0 -1,-0.1 0.703 112.1 86.6 -48.2 -18.4 -1.8 -12.1 -0.5 45 45 A V H 34 S+ 0 0 21 -5,-0.3 6,-0.5 1,-0.2 -4,-0.1 0.898 95.2 38.4 -51.2 -45.2 0.3 -9.0 -1.3 46 46 A A H <4>S+ 0 0 13 -3,-1.9 5,-1.0 -6,-0.6 -1,-0.2 0.947 112.3 55.3 -71.1 -49.4 2.3 -11.1 -3.8 47 47 A K H ><5S+ 0 0 180 -4,-0.8 3,-0.9 -6,-0.2 -2,-0.2 0.845 101.5 76.4 -51.5 -33.0 -0.8 -13.0 -5.0 48 48 A A G ><5S- 0 0 47 -4,-3.1 3,-2.2 1,-0.3 -5,-0.0 -0.550 115.2 -3.1 -80.7 143.0 -2.2 -9.6 -5.7 49 49 A I G 3 5S- 0 0 53 1,-0.3 -1,-0.3 -2,-0.2 -2,-0.1 0.747 111.5 -93.0 45.5 26.3 -0.9 -7.7 -8.7 50 50 A G G < 5 - 0 0 66 -3,-0.9 -1,-0.3 1,-0.1 -3,-0.2 0.799 68.1-176.4 39.7 38.4 1.4 -10.8 -9.2 51 51 A A < < - 0 0 11 -3,-2.2 2,-0.3 -5,-1.0 -1,-0.1 -0.229 10.7-147.6 -63.4 154.3 4.0 -8.9 -7.2 52 52 A K > - 0 0 145 -3,-0.1 3,-1.7 23,-0.1 2,-0.7 -0.815 36.9 -71.5-122.9 162.1 7.4 -10.5 -6.7 53 53 A R T 3 S+ 0 0 144 -2,-0.3 23,-0.2 1,-0.3 -13,-0.1 -0.341 125.8 25.8 -54.7 100.6 10.0 -10.4 -3.9 54 54 A G T 3 S+ 0 0 31 21,-2.4 2,-0.5 -2,-0.7 -35,-0.3 0.565 91.1 122.5 118.0 18.1 11.3 -6.8 -4.2 55 55 A D < - 0 0 22 -3,-1.7 20,-2.7 20,-0.3 2,-0.3 -0.944 46.7-149.7-116.0 128.8 8.4 -5.1 -5.8 56 56 A I E -AB 17 74A 2 -39,-1.2 -39,-4.1 -2,-0.5 2,-0.4 -0.742 11.4-143.0 -96.6 142.2 6.7 -2.0 -4.3 57 57 A V E -AB 16 73A 10 16,-3.0 16,-1.5 -2,-0.3 2,-0.6 -0.844 3.3-142.9-107.7 141.1 3.0 -1.3 -4.9 58 58 A K E -AB 15 72A 51 -43,-3.8 -43,-2.4 -2,-0.4 2,-0.5 -0.897 20.8-179.3-105.8 115.1 1.4 2.1 -5.4 59 59 A I E -AB 14 71A 21 12,-1.4 12,-2.3 -2,-0.6 2,-0.4 -0.964 6.8-164.8-117.5 125.2 -2.0 2.6 -3.8 60 60 A I E -AB 13 70A 21 -47,-0.9 -47,-0.8 -2,-0.5 2,-0.5 -0.906 4.9-155.5-112.2 135.3 -4.0 5.8 -4.0 61 61 A R E - B 0 69A 124 8,-2.9 8,-3.0 -2,-0.4 2,-0.5 -0.933 9.3-148.1-111.5 123.5 -7.0 6.7 -1.9 62 62 A K E + B 0 68A 150 -2,-0.5 6,-0.2 6,-0.2 -2,-0.0 -0.767 23.1 172.5 -94.1 130.1 -9.5 9.2 -3.2 63 63 A S E > - B 0 67A 64 4,-2.0 4,-1.7 -2,-0.5 3,-0.2 -0.865 39.9 -74.3-131.6 165.2 -11.3 11.4 -0.6 64 64 A P T 4 S+ 0 0 103 0, 0.0 -1,-0.0 0, 0.0 4,-0.0 -0.308 112.4 33.0 -60.5 137.6 -13.7 14.4 -0.7 65 65 A T T 4 S- 0 0 105 1,-0.1 3,-0.1 2,-0.0 0, 0.0 0.885 134.6 -64.6 81.3 44.4 -12.1 17.8 -1.6 66 66 A A T 4 S+ 0 0 99 -3,-0.2 2,-0.8 1,-0.2 -1,-0.1 0.878 86.5 162.1 46.5 46.0 -9.5 16.4 -4.0 67 67 A E E < -B 63 0A 94 -4,-1.7 -4,-2.0 2,-0.0 2,-0.5 -0.841 15.1-176.4-101.2 104.6 -7.8 14.5 -1.2 68 68 A E E -B 62 0A 123 -2,-0.8 2,-0.6 -6,-0.2 -6,-0.2 -0.883 6.9-165.2-105.1 126.3 -5.6 11.8 -2.5 69 69 A F E -B 61 0A 126 -8,-3.0 -8,-2.9 -2,-0.5 2,-0.4 -0.937 6.6-168.8-113.6 118.0 -3.8 9.5 -0.1 70 70 A V E +B 60 0A 47 -2,-0.6 2,-0.4 -10,-0.3 -10,-0.2 -0.868 7.2 178.7-110.6 138.6 -0.9 7.3 -1.4 71 71 A T E -B 59 0A 42 -12,-2.3 -12,-1.4 -2,-0.4 2,-0.4 -0.988 14.4-149.3-139.7 126.5 0.8 4.5 0.4 72 72 A Y E -B 58 0A 8 -2,-0.4 2,-0.4 -14,-0.2 -14,-0.2 -0.777 8.8-167.0-100.1 139.6 3.6 2.3 -0.9 73 73 A R E -B 57 0A 93 -16,-1.5 -16,-3.0 -2,-0.4 2,-0.5 -0.991 10.7-145.6-126.9 129.7 4.1 -1.4 0.1 74 74 A L E -B 56 0A 29 -37,-0.9 2,-0.6 -2,-0.4 -35,-0.4 -0.820 14.0-132.3 -98.8 126.7 7.3 -3.3 -0.6 75 75 A V + 0 0 1 -20,-2.7 -21,-2.4 -2,-0.5 2,-0.3 -0.644 38.1 172.8 -77.0 115.8 7.1 -7.0 -1.4 76 76 A Q B c 40 0B 95 -37,-1.2 -35,-1.4 -2,-0.6 -23,-0.1 -0.915 360.0 360.0-127.1 152.8 9.7 -8.7 0.8 77 77 A D 0 0 97 -2,-0.3 -37,-0.1 -37,-0.2 -25,-0.0 -0.673 360.0 360.0 -86.4 360.0 10.6 -12.3 1.5