==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-APR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 05-APR-12 4EID . COMPND 2 MOLECULE: CYTOCHROME C6; . SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP.; . AUTHOR S.KRZYWDA,W.BIALEK,P.ZATWARNICKI,M.JASKOLSKI,A.SZCZEPANIAK . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5122.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 65 69.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 9.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 44.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 78 0, 0.0 2,-0.9 0, 0.0 78,-0.1 0.000 360.0 360.0 360.0-168.0 -5.1 -5.6 20.6 2 2 A D > - 0 0 85 73,-0.2 4,-2.1 1,-0.2 81,-0.2 -0.745 360.0-177.6 -97.0 97.5 -5.6 -8.6 18.3 3 3 A A H > S+ 0 0 21 -2,-0.9 4,-1.2 79,-0.2 -1,-0.2 0.882 84.0 53.9 -58.9 -41.8 -2.5 -9.4 16.2 4 4 A A H >> S+ 0 0 78 1,-0.2 3,-0.6 2,-0.2 4,-0.6 0.931 110.4 45.6 -63.4 -42.6 -4.1 -12.2 14.4 5 5 A A H >> S+ 0 0 28 1,-0.2 4,-1.1 2,-0.2 3,-0.9 0.869 107.7 60.5 -65.4 -34.0 -7.1 -10.1 13.4 6 6 A G H 3X S+ 0 0 0 -4,-2.1 4,-2.5 73,-0.4 -1,-0.2 0.765 87.3 72.2 -67.3 -22.1 -4.7 -7.4 12.4 7 7 A A H S+ 0 0 13 -4,-2.5 4,-2.6 1,-0.2 5,-1.3 0.934 109.1 51.0 -58.0 -49.6 -2.6 -5.4 6.9 11 11 A A H <5S+ 0 0 72 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.855 116.1 42.1 -57.9 -37.2 -3.3 -7.5 3.9 12 12 A A H <5S+ 0 0 77 -4,-1.9 -1,-0.2 -5,-0.1 -2,-0.2 0.690 132.2 16.2 -82.2 -21.2 -6.2 -5.3 2.9 13 13 A N H <5S+ 0 0 55 -4,-1.5 -3,-0.2 -3,-0.4 -2,-0.2 0.484 127.1 32.3-133.2 -10.7 -4.6 -1.9 3.6 14 14 A C T X5S+ 0 0 21 -4,-2.6 4,-2.0 -5,-0.2 3,-0.3 0.542 86.7 83.5-136.0 -15.9 -0.8 -2.0 4.0 15 15 A A H >< S+ 0 0 23 -4,-2.0 3,-2.4 5,-0.2 4,-0.3 -0.055 71.5 162.0-129.8 29.5 4.9 -2.6 3.1 19 19 A A G >< S+ 0 0 63 -4,-1.0 3,-1.5 1,-0.3 -4,-0.1 -0.264 76.9 12.7 -48.6 136.3 5.0 -6.1 1.6 20 20 A G G 3 S- 0 0 43 1,-0.3 -1,-0.3 2,-0.1 3,-0.1 0.539 130.5 -72.2 74.0 7.8 7.3 -8.3 3.6 21 21 A G G < S+ 0 0 0 -3,-2.4 10,-3.1 1,-0.2 11,-0.3 0.582 109.3 118.2 75.1 13.0 7.4 -5.8 6.4 22 22 A N < - 0 0 72 -3,-1.5 2,-0.3 -4,-0.3 -1,-0.2 0.005 67.0-116.9 -93.6-162.3 9.5 -3.6 4.2 23 23 A N - 0 0 23 4,-0.2 -5,-0.2 7,-0.1 6,-0.1 -0.829 17.5-171.8-146.1 103.5 8.9 -0.1 2.8 24 24 A A S S+ 0 0 80 -7,-2.5 -6,-0.1 -2,-0.3 -1,-0.1 0.762 89.4 41.3 -65.2 -28.3 8.7 0.2 -1.0 25 25 A V S S+ 0 0 96 -8,-0.4 -1,-0.2 1,-0.3 -7,-0.1 0.881 131.3 18.8 -88.3 -43.9 8.6 4.1 -0.8 26 26 A M S > S- 0 0 79 3,-0.1 3,-1.8 1,-0.1 -1,-0.3 -0.828 73.9-165.8-130.8 86.4 11.2 4.8 1.9 27 27 A P T 3 S+ 0 0 96 0, 0.0 3,-0.2 0, 0.0 -4,-0.2 0.702 81.8 56.6 -59.5 -22.7 13.3 1.7 2.1 28 28 A T T 3 S+ 0 0 83 1,-0.2 2,-1.6 -6,-0.1 11,-0.1 0.797 93.8 71.6 -72.3 -29.2 15.0 2.5 5.4 29 29 A K S < S+ 0 0 79 -3,-1.8 -1,-0.2 -6,-0.1 -3,-0.1 -0.407 71.5 155.2 -95.0 63.7 11.8 2.9 7.3 30 30 A T - 0 0 23 -2,-1.6 -8,-0.2 -3,-0.2 9,-0.1 -0.114 56.2-112.3 -81.2 177.7 10.7 -0.7 7.4 31 31 A L S S+ 0 0 19 -10,-3.1 2,-0.2 -13,-0.1 -9,-0.1 0.166 77.0 119.6 -97.7 12.2 8.4 -2.5 9.9 32 32 A K S > S- 0 0 63 -11,-0.3 4,-2.7 1,-0.1 5,-0.2 -0.501 77.8-110.2 -78.4 154.9 11.3 -4.5 11.3 33 33 A A H > S+ 0 0 32 55,-0.4 4,-2.0 1,-0.2 5,-0.2 0.851 114.9 48.5 -55.4 -42.2 12.0 -4.1 15.1 34 34 A D H > S+ 0 0 118 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.911 113.6 44.9 -68.9 -44.5 15.3 -2.3 14.5 35 35 A A H > S+ 0 0 7 1,-0.2 4,-2.6 2,-0.2 5,-0.4 0.923 110.8 54.6 -65.2 -41.3 14.0 0.2 12.0 36 36 A L H X S+ 0 0 11 -4,-2.7 4,-2.3 1,-0.2 -2,-0.2 0.922 108.4 47.9 -61.0 -46.2 10.9 0.9 14.1 37 37 A K H < S+ 0 0 91 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.803 116.4 45.8 -68.5 -20.6 13.0 1.8 17.2 38 38 A T H < S+ 0 0 84 -4,-1.2 -2,-0.2 -3,-0.3 -1,-0.2 0.870 130.2 14.3 -80.5 -41.3 15.2 4.1 15.1 39 39 A Y H < S+ 0 0 96 -4,-2.6 2,-0.5 -9,-0.1 -3,-0.2 0.663 88.9 103.2-117.7 -26.0 12.5 5.9 13.1 40 40 A L S X S- 0 0 24 -4,-2.3 4,-3.1 -5,-0.4 5,-0.3 -0.607 72.1-117.2 -79.2 122.0 9.0 5.6 14.3 41 41 A A T 4 S+ 0 0 61 -2,-0.5 2,-1.8 1,-0.2 16,-0.1 -0.119 93.2 9.7 -53.5 141.7 7.8 8.7 16.2 42 42 A G T >>S+ 0 0 7 1,-0.2 6,-1.4 14,-0.0 5,-1.1 -0.382 125.6 60.4 86.9 -58.6 7.0 8.2 19.8 43 43 A Y T >45S+ 0 0 36 -2,-1.8 3,-1.2 1,-0.2 -1,-0.2 0.933 100.2 54.8 -63.0 -45.8 8.3 4.8 19.9 44 44 A K T 3<5S+ 0 0 106 -4,-3.1 -1,-0.2 1,-0.2 -3,-0.1 0.789 111.6 44.4 -62.9 -25.5 11.8 5.9 19.0 45 45 A D T 345S- 0 0 104 -5,-0.3 -1,-0.2 -3,-0.2 -2,-0.2 0.480 112.0-115.7-102.1 3.2 11.9 8.4 21.9 46 46 A G T <<5S+ 0 0 56 -3,-1.2 -3,-0.2 -4,-0.6 -2,-0.1 0.335 88.3 108.3 83.6 -1.0 10.5 6.1 24.5 47 47 A S S - 0 0 73 -2,-0.3 4,-2.6 1,-0.1 5,-0.2 -0.329 37.2-108.4 -67.2 161.2 4.8 1.8 23.2 50 50 A L H > S+ 0 0 5 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.960 119.8 50.9 -58.2 -49.8 5.4 0.2 19.8 51 51 A E H > S+ 0 0 70 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.921 112.9 44.8 -57.9 -46.2 1.7 -0.7 19.5 52 52 A E H > S+ 0 0 96 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.905 111.8 52.5 -67.1 -39.8 0.5 2.8 20.4 53 53 A A H X S+ 0 0 1 -4,-2.6 4,-2.1 2,-0.2 -1,-0.2 0.883 110.7 47.2 -64.8 -37.6 3.0 4.4 18.1 54 54 A V H X S+ 0 0 7 -4,-2.6 4,-2.7 2,-0.2 5,-0.3 0.924 110.4 52.6 -66.0 -44.1 1.9 2.2 15.2 55 55 A A H X S+ 0 0 16 -4,-2.5 4,-2.5 -5,-0.2 -2,-0.2 0.906 110.4 49.7 -57.3 -40.0 -1.8 3.0 16.0 56 56 A Y H X S+ 0 0 117 -4,-2.6 4,-2.7 2,-0.2 5,-0.2 0.934 111.6 45.7 -66.3 -49.1 -0.9 6.7 15.9 57 57 A V H X S+ 0 0 26 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.883 113.9 49.7 -66.3 -37.3 0.9 6.6 12.5 58 58 A V H < S+ 0 0 10 -4,-2.7 10,-2.6 2,-0.2 11,-0.3 0.923 115.9 43.3 -62.0 -47.0 -1.9 4.5 11.0 59 59 A T H < S+ 0 0 42 -4,-2.5 10,-2.3 -5,-0.3 -2,-0.2 0.915 129.6 23.5 -63.9 -43.4 -4.5 6.9 12.2 60 60 A N H < S- 0 0 82 -4,-2.7 7,-0.3 7,-0.2 -3,-0.2 0.497 96.4-136.1-109.9 -7.2 -2.7 10.1 11.4 61 61 A G < - 0 0 12 -4,-2.2 2,-0.2 5,-0.4 -1,-0.2 0.009 9.2-132.1 70.4 175.3 -0.3 9.3 8.6 62 62 A Q B > -A 65 0A 123 3,-1.8 3,-2.7 1,-0.1 -1,-0.1 -0.775 55.3 -43.5-166.5 121.8 3.3 10.5 8.3 63 63 A G T 3 S- 0 0 73 1,-0.3 -1,-0.1 -2,-0.2 0, 0.0 -0.355 130.9 -4.6 60.5-128.0 5.1 12.0 5.4 64 64 A A T 3 S+ 0 0 80 -2,-0.1 -1,-0.3 -3,-0.1 -3,-0.0 0.586 114.0 99.1 -72.7 -16.2 4.2 10.1 2.3 65 65 A M B < S-A 62 0A 52 -3,-2.7 -3,-1.8 1,-0.1 2,-0.0 -0.643 75.2-128.0 -78.5 123.4 2.2 7.5 4.3 66 66 A P - 0 0 66 0, 0.0 -5,-0.4 0, 0.0 2,-0.3 -0.323 19.5-110.4 -65.7 157.0 -1.6 8.3 4.1 67 67 A A - 0 0 43 -7,-0.3 -8,-0.2 -6,-0.1 -7,-0.2 -0.624 20.4-165.5 -79.4 145.6 -3.7 8.6 7.2 68 68 A F >> + 0 0 18 -10,-2.6 3,-2.5 -2,-0.3 4,-1.9 0.420 49.3 118.7-111.6 -9.1 -6.3 5.9 7.8 69 69 A G B 34 S+b 72 0B 37 -10,-2.3 4,-0.1 -11,-0.3 -2,-0.1 -0.424 86.2 22.2 -55.5 133.9 -8.4 7.7 10.5 70 70 A G T 34 S+ 0 0 88 2,-0.5 -1,-0.3 -2,-0.1 3,-0.1 0.349 121.2 64.6 84.1 -5.2 -11.9 7.9 8.8 71 71 A R T <4 S+ 0 0 149 -3,-2.5 2,-0.3 1,-0.3 -2,-0.2 0.644 102.0 39.1-115.1 -32.5 -11.1 5.0 6.5 72 72 A L B < S-b 69 0B 23 -4,-1.9 -2,-0.5 -13,-0.1 -1,-0.3 -0.934 87.1-105.4-121.5 150.8 -10.6 2.1 9.0 73 73 A S > - 0 0 59 -2,-0.3 4,-2.3 1,-0.1 5,-0.2 -0.226 32.7-109.3 -67.8 162.4 -12.6 1.3 12.1 74 74 A D H > S+ 0 0 146 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.904 120.9 49.6 -58.3 -43.6 -11.1 1.8 15.5 75 75 A A H > S+ 0 0 57 1,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.895 108.4 51.9 -64.1 -42.9 -10.8 -1.9 16.0 76 76 A D H > S+ 0 0 60 2,-0.2 4,-2.6 1,-0.2 -1,-0.2 0.893 111.0 47.3 -59.5 -43.6 -9.1 -2.4 12.7 77 77 A I H X S+ 0 0 11 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.931 114.2 47.3 -62.2 -48.9 -6.5 0.3 13.5 78 78 A A H X S+ 0 0 38 -4,-2.4 4,-2.0 -5,-0.2 -2,-0.2 0.908 114.3 47.3 -60.0 -44.0 -5.9 -1.2 16.9 79 79 A N H X S+ 0 0 29 -4,-2.9 4,-2.3 1,-0.2 -73,-0.4 0.904 109.6 50.5 -70.6 -40.5 -5.6 -4.7 15.5 80 80 A V H X S+ 0 0 2 -4,-2.6 4,-2.6 -5,-0.2 -1,-0.2 0.892 108.7 54.3 -63.4 -37.1 -3.2 -3.8 12.7 81 81 A A H X S+ 0 0 0 -4,-2.0 4,-2.5 2,-0.2 -2,-0.2 0.905 108.6 49.1 -59.3 -42.6 -1.0 -2.0 15.3 82 82 A A H X S+ 0 0 7 -4,-2.0 4,-2.6 2,-0.2 -79,-0.2 0.888 109.4 52.3 -62.5 -39.6 -0.9 -5.2 17.3 83 83 A Y H X S+ 0 0 40 -4,-2.3 4,-3.0 -81,-0.2 5,-0.3 0.942 110.1 47.9 -61.9 -49.1 -0.0 -7.2 14.2 84 84 A I H X S+ 0 0 9 -4,-2.6 4,-2.5 1,-0.2 5,-0.2 0.933 113.6 47.7 -56.3 -47.7 2.9 -4.8 13.4 85 85 A A H X S+ 0 0 6 -4,-2.5 4,-3.1 1,-0.2 5,-0.3 0.923 114.1 46.5 -62.0 -40.0 4.1 -5.0 17.0 86 86 A D H X S+ 0 0 46 -4,-2.6 4,-1.9 1,-0.2 -2,-0.2 0.925 113.3 47.8 -69.5 -45.6 3.8 -8.8 17.1 87 87 A Q H <>S+ 0 0 22 -4,-3.0 5,-2.6 -5,-0.2 6,-0.5 0.913 118.5 41.3 -60.4 -45.3 5.6 -9.3 13.8 88 88 A A H ><5S+ 0 0 1 -4,-2.5 3,-1.1 -5,-0.3 -55,-0.4 0.950 115.4 46.6 -68.4 -52.5 8.4 -6.9 14.7 89 89 A E H 3<5S+ 0 0 115 -4,-3.1 -1,-0.2 1,-0.3 -2,-0.2 0.805 119.8 41.1 -64.6 -28.7 8.9 -8.0 18.3 90 90 A N T 3<5S- 0 0 90 -4,-1.9 -1,-0.3 -5,-0.3 -2,-0.2 0.346 107.3-123.5-101.5 4.7 8.9 -11.7 17.4 91 91 A N T < 5 + 0 0 130 -3,-1.1 -3,-0.2 -4,-0.3 -4,-0.1 0.925 62.0 143.0 55.8 50.7 10.9 -11.2 14.2 92 92 A K < 0 0 116 -5,-2.6 -4,-0.1 -6,-0.2 -1,-0.1 0.363 360.0 360.0-104.1 3.5 8.3 -12.8 12.0 93 93 A W 0 0 88 -6,-0.5 -1,-0.2 -5,-0.1 -71,-0.1 0.846 360.0 360.0 -69.5 360.0 8.5 -10.8 8.9