==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 03-MAR-00 1EJP . COMPND 2 MOLECULE: SYNDECAN-4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR D.LEE,E.S.OH,A.WOODS,J.R.COUCHMAN,W.LEE . 56 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7028.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 214 0, 0.0 2,-0.6 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 45.8 5.6 -23.4 -25.4 2 2 A M - 0 0 159 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.892 360.0 -26.7-107.4 120.4 6.4 -24.4 -29.0 3 3 A K S S+ 0 0 213 -2,-0.6 -1,-0.2 1,-0.1 0, 0.0 0.943 106.9 110.8 44.1 58.9 4.1 -26.9 -30.7 4 4 A K - 0 0 90 -3,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.252 64.8-144.6-142.4 9.8 3.0 -28.4 -27.4 5 5 A K + 0 0 185 -4,-0.1 -1,-0.0 0, 0.0 -3,-0.0 0.111 58.4 97.2 46.5-173.2 -0.6 -27.3 -26.9 6 6 A D - 0 0 121 2,-0.0 2,-0.2 -5,-0.0 -2,-0.1 0.703 52.8-162.3 66.6 120.8 -1.7 -26.5 -23.4 7 7 A E - 0 0 150 1,-0.2 0, 0.0 -3,-0.0 0, 0.0 -0.521 16.3-116.4-121.6-168.6 -1.7 -22.8 -22.4 8 8 A G - 0 0 31 -2,-0.2 2,-0.3 1,-0.1 -1,-0.2 0.521 37.1-119.0-100.2-112.4 -1.8 -20.8 -19.2 9 9 A S + 0 0 63 2,-0.0 31,-0.1 0, 0.0 -1,-0.1 -0.938 63.9 44.9-172.2-166.3 -4.7 -18.4 -18.3 10 10 A Y - 0 0 135 -2,-0.3 29,-0.1 29,-0.1 -2,-0.1 0.104 52.9-160.8 41.2-164.6 -5.6 -14.8 -17.5 11 11 A D + 0 0 128 29,-0.2 29,-0.2 27,-0.1 -1,-0.1 -0.020 25.9 149.3-170.2 -71.9 -4.1 -12.2 -19.9 12 12 A L - 0 0 60 29,-0.1 32,-0.1 30,-0.1 29,-0.1 0.102 54.7-103.1 43.9-168.9 -4.0 -8.6 -18.7 13 13 A G - 0 0 37 30,-1.5 31,-0.2 1,-0.1 28,-0.1 0.706 48.5 -94.0-113.5 -74.7 -1.1 -6.5 -20.1 14 14 A K S S- 0 0 131 29,-0.3 28,-1.5 27,-0.1 29,-0.3 -0.236 78.1 -5.7-170.0 -92.6 1.8 -5.9 -17.6 15 15 A K - 0 0 153 27,-0.2 2,-0.9 26,-0.1 26,-0.0 -0.987 58.4-126.4-132.4 130.3 2.2 -2.9 -15.3 16 16 A P - 0 0 73 0, 0.0 2,-0.1 0, 0.0 31,-0.1 -0.588 36.8-175.0 -73.7 105.7 0.1 0.3 -15.3 17 17 A I - 0 0 73 -2,-0.9 29,-0.4 29,-0.4 31,-0.2 -0.278 15.9-165.2 -92.0-176.6 2.6 3.1 -15.6 18 18 A Y + 0 0 149 29,-0.2 2,-0.3 28,-0.1 29,-0.2 -0.267 32.5 128.9-170.0 72.6 1.9 6.9 -15.5 19 19 A K + 0 0 132 27,-0.2 30,-0.2 30,-0.1 2,-0.2 -0.945 12.6 140.1-132.2 154.5 4.6 9.3 -16.7 20 20 A K + 0 0 112 -2,-0.3 28,-0.1 28,-0.2 27,-0.0 -0.630 9.3 150.1 170.6 127.7 4.6 12.2 -19.2 21 21 A A - 0 0 74 -2,-0.2 29,-0.1 29,-0.1 -2,-0.0 -0.925 34.3-122.4-169.5 143.2 6.3 15.6 -19.4 22 22 A P - 0 0 104 0, 0.0 -2,-0.0 0, 0.0 28,-0.0 0.114 17.4-148.3 -72.8-167.6 7.6 18.1 -21.9 23 23 A T + 0 0 137 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.331 46.7 103.1-168.1 76.5 11.2 19.4 -22.1 24 24 A N - 0 0 146 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.990 58.4-118.6-158.9 149.5 11.8 23.0 -23.3 25 25 A E - 0 0 152 -2,-0.3 2,-1.2 2,-0.2 -2,-0.0 -0.707 20.9-130.7 -93.0 142.4 12.6 26.4 -21.9 26 26 A F S S+ 0 0 173 -2,-0.3 2,-0.3 2,-0.1 -1,-0.1 -0.137 81.5 88.2 -82.8 45.6 10.2 29.3 -22.5 27 27 A Y 0 0 184 -2,-1.2 -2,-0.2 0, 0.0 0, 0.0 -0.997 360.0 360.0-144.2 138.1 13.1 31.6 -23.7 28 28 A A 0 0 142 -2,-0.3 -2,-0.1 0, 0.0 0, 0.0 -0.095 360.0 360.0 -69.2 360.0 14.6 32.2 -27.1 29 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 30 1 B R 0 0 215 0, 0.0 2,-0.6 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 45.8 -14.4 -17.7 -6.2 31 2 B M - 0 0 158 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.893 360.0 -26.7-107.3 120.3 -15.5 -17.8 -2.5 32 3 B K S S+ 0 0 206 -2,-0.6 -1,-0.2 1,-0.1 0, 0.0 0.943 106.9 110.8 44.1 59.0 -14.4 -20.9 -0.5 33 4 B K - 0 0 91 -3,-0.2 -1,-0.1 2,-0.1 -2,-0.1 0.254 64.8-144.6-142.4 9.8 -14.2 -23.0 -3.6 34 5 B K + 0 0 185 -4,-0.1 -1,-0.0 0, 0.0 -3,-0.0 0.111 58.4 97.2 46.7-173.2 -10.4 -23.7 -4.0 35 6 B D - 0 0 120 2,-0.0 2,-0.2 -5,-0.0 -2,-0.1 0.703 52.8-162.3 66.6 120.8 -9.1 -23.8 -7.6 36 7 B E - 0 0 151 1,-0.2 0, 0.0 -3,-0.0 0, 0.0 -0.522 16.3-116.5-121.5-168.6 -7.6 -20.6 -9.0 37 8 B G - 0 0 30 -2,-0.2 2,-0.3 1,-0.1 -1,-0.2 0.521 37.1-118.9-100.3-112.4 -6.8 -19.2 -12.5 38 9 B S + 0 0 59 2,-0.0 -27,-0.1 0, 0.0 -1,-0.1 -0.939 64.0 44.8-172.1-166.4 -3.2 -18.5 -13.6 39 10 B Y - 0 0 130 -2,-0.3 -29,-0.1 -29,-0.1 -2,-0.1 0.103 52.9-160.8 41.3-164.7 -0.8 -15.7 -14.8 40 11 B D + 0 0 126 -29,-0.2 -29,-0.2 -31,-0.1 -1,-0.1 -0.018 25.9 149.3-170.1 -72.0 -1.0 -12.5 -12.8 41 12 B L - 0 0 59 -29,-0.1 -26,-0.1 -28,-0.1 -29,-0.1 0.102 54.7-103.1 44.0-169.1 0.4 -9.2 -14.4 42 13 B G - 0 0 37 -28,-1.5 -27,-0.2 1,-0.1 -30,-0.1 0.706 48.4 -94.0-113.3 -74.6 -1.4 -6.0 -13.3 43 14 B K S S- 0 0 129 -29,-0.3 -30,-1.5 -31,-0.1 -29,-0.3 -0.236 78.1 -5.7-170.1 -92.7 -3.8 -4.6 -16.0 44 15 B K - 0 0 151 -31,-0.2 2,-0.9 -32,-0.1 -32,-0.0 -0.987 58.4-126.4-132.4 130.3 -2.9 -2.0 -18.6 45 16 B P - 0 0 71 0, 0.0 2,-0.1 0, 0.0 -27,-0.1 -0.587 36.8-175.0 -73.8 105.7 0.4 -0.0 -19.0 46 17 B I - 0 0 73 -2,-0.9 -29,-0.4 -29,-0.4 -27,-0.2 -0.279 16.0-165.1 -92.0-176.5 -0.7 3.6 -19.1 47 18 B Y + 0 0 154 -29,-0.2 2,-0.3 -30,-0.1 -29,-0.2 -0.268 32.5 128.9-170.1 72.6 1.5 6.7 -19.6 48 19 B K + 0 0 132 -31,-0.2 -28,-0.2 -28,-0.1 2,-0.2 -0.945 12.6 140.1-132.1 154.5 0.1 10.1 -18.8 49 20 B K + 0 0 111 -2,-0.3 -30,-0.1 -30,-0.2 -31,-0.0 -0.630 9.3 150.1 170.6 127.7 1.4 13.1 -16.7 50 21 B A - 0 0 75 -2,-0.2 -29,-0.1 -29,-0.1 -2,-0.0 -0.926 34.3-122.3-169.6 143.1 1.3 16.9 -16.9 51 22 B P - 0 0 104 0, 0.0 -2,-0.0 0, 0.0 -30,-0.0 0.113 17.4-148.3 -72.8-167.6 1.3 20.0 -14.7 52 23 B T + 0 0 135 2,-0.0 2,-0.3 0, 0.0 -2,-0.0 -0.332 46.7 103.0-168.0 76.4 -1.4 22.7 -14.9 53 24 B N - 0 0 148 2,-0.0 2,-0.3 0, 0.0 0, 0.0 -0.990 58.5-118.6-158.9 149.4 -0.4 26.3 -14.1 54 25 B E - 0 0 153 -2,-0.3 2,-1.2 2,-0.2 -2,-0.0 -0.707 20.9-130.6 -93.0 142.5 0.3 29.6 -15.9 55 26 B F S S+ 0 0 176 -2,-0.3 2,-0.4 2,-0.1 -1,-0.1 -0.138 81.5 88.2 -82.7 45.5 3.7 31.2 -15.6 56 27 B Y 0 0 187 -2,-1.2 -2,-0.2 0, 0.0 0, 0.0 -0.996 360.0 360.0-144.2 138.2 2.1 34.6 -14.8 57 28 B A 0 0 141 -2,-0.4 -2,-0.1 0, 0.0 0, 0.0 -0.095 360.0 360.0 -69.3 360.0 1.0 36.2 -11.5