==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 04-MAR-00 1EJQ . COMPND 2 MOLECULE: SYNDECAN-4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.SHIN,E.S.OH,D.LEE,J.R.COUCHMAN,W.LEE . 56 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6354.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 173 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.0 10.0 1.7 -15.1 2 2 A M - 0 0 166 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.409 360.0 -12.9 -70.4-143.6 13.6 0.3 -14.9 3 3 A K S S- 0 0 190 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.015 73.8-165.4 -48.9 165.4 14.2 -3.5 -15.0 4 4 A K - 0 0 99 -3,-0.1 2,-0.1 2,-0.0 -1,-0.1 -0.876 19.0-153.8-146.4 179.3 11.1 -5.7 -14.6 5 5 A K + 0 0 202 -2,-0.3 3,-0.1 1,-0.0 -2,-0.0 -0.579 31.6 141.9-163.4 93.9 10.2 -9.3 -13.8 6 6 A D + 0 0 107 -2,-0.1 6,-0.1 1,-0.1 -1,-0.0 -0.295 21.6 132.2-131.5 52.0 6.8 -10.9 -14.9 7 7 A E + 0 0 194 1,-0.1 2,-0.7 2,-0.1 -1,-0.1 0.336 55.8 87.1 -85.0 11.1 7.7 -14.5 -15.9 8 8 A G - 0 0 44 -3,-0.1 2,-0.3 32,-0.0 -1,-0.1 -0.825 67.9-157.9-113.3 96.5 4.7 -15.7 -13.9 9 9 A S + 0 0 82 -2,-0.7 31,-0.2 1,-0.1 4,-0.1 -0.549 47.0 108.8 -73.6 128.6 1.5 -15.7 -16.0 10 10 A Y S S- 0 0 183 29,-0.5 29,-0.5 -2,-0.3 -1,-0.1 0.068 87.5 -31.9-159.2 -79.0 -1.6 -15.6 -13.7 11 11 A D S S+ 0 0 78 27,-0.2 2,-0.3 29,-0.2 29,-0.2 -0.218 103.3 74.2-157.2 57.7 -3.8 -12.4 -13.5 12 12 A L + 0 0 72 30,-0.2 -2,-0.3 29,-0.1 29,-0.1 -0.934 25.8 130.8-168.7 143.5 -1.7 -9.2 -13.9 13 13 A G + 0 0 33 1,-0.6 2,-0.2 30,-0.3 28,-0.2 0.251 64.4 59.4-162.3 -50.1 0.0 -7.2 -16.6 14 14 A K - 0 0 126 29,-0.5 -1,-0.6 26,-0.0 29,-0.5 -0.622 64.8-155.2 -93.7 155.0 -0.9 -3.5 -16.6 15 15 A K - 0 0 78 -2,-0.2 31,-0.2 -3,-0.1 2,-0.0 -0.897 21.2-100.9-128.7 160.0 -0.2 -1.2 -13.6 16 16 A P - 0 0 61 0, 0.0 27,-0.0 0, 0.0 31,-0.0 -0.303 30.1-179.3 -73.2 159.2 -1.7 2.0 -12.3 17 17 A I + 0 0 56 27,-0.2 2,-0.6 -2,-0.0 31,-0.1 -0.245 4.9 172.9-158.5 60.9 0.1 5.4 -13.0 18 18 A Y + 0 0 93 29,-0.2 29,-0.2 30,-0.1 0, 0.0 -0.620 37.0 106.3 -77.4 116.4 -1.8 8.3 -11.4 19 19 A K + 0 0 145 -2,-0.6 2,-0.2 27,-0.1 28,-0.1 -0.066 34.5 137.0 172.2 74.6 0.4 11.4 -11.8 20 20 A K - 0 0 75 35,-0.1 32,-0.3 32,-0.0 34,-0.1 -0.702 31.1-165.1-123.0 177.2 -0.5 14.1 -14.4 21 21 A A + 0 0 14 -2,-0.2 29,-0.1 29,-0.1 -1,-0.0 -0.093 33.5 141.8-159.6 49.1 -0.6 18.0 -14.4 22 22 A P S S- 0 0 84 0, 0.0 2,-0.3 0, 0.0 28,-0.1 0.481 84.2 -28.4 -73.3 -1.1 -2.5 19.1 -17.5 23 23 A T S S- 0 0 72 26,-0.3 29,-0.2 29,-0.2 31,-0.1 -0.876 78.6 -77.3-178.1-148.3 -4.0 21.9 -15.3 24 24 A N S S+ 0 0 107 -2,-0.3 2,-0.3 29,-0.1 26,-0.1 -0.317 81.7 101.0-137.9 55.5 -4.8 22.7 -11.6 25 25 A E - 0 0 149 24,-0.1 2,-0.5 27,-0.1 27,-0.1 -0.961 52.2-146.7-137.8 156.2 -8.1 20.9 -10.8 26 26 A F - 0 0 134 -2,-0.3 2,-0.5 25,-0.1 23,-0.1 -0.942 15.9-178.4-128.0 115.1 -9.1 17.7 -8.9 27 27 A Y 0 0 212 -2,-0.5 -2,-0.0 1,-0.1 23,-0.0 -0.928 360.0 360.0-114.5 131.7 -12.1 15.7 -10.0 28 28 A A 0 0 145 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 0.373 360.0 360.0-170.0 360.0 -13.2 12.5 -8.2 29 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 30 1 B R 0 0 175 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 104.0 -14.8 2.1 -12.9 31 2 B M - 0 0 167 1,-0.1 0, 0.0 2,-0.0 0, 0.0 0.407 360.0 -12.9 -70.5-143.6 -18.4 1.0 -13.3 32 3 B K S S- 0 0 191 1,-0.1 2,-0.3 2,-0.0 -1,-0.1 0.015 73.9-165.4 -49.0 165.4 -19.3 -2.7 -14.0 33 4 B K - 0 0 102 -3,-0.1 2,-0.1 2,-0.0 -1,-0.1 -0.876 19.0-153.7-146.3 179.1 -16.3 -4.9 -14.9 34 5 B K + 0 0 203 -2,-0.3 3,-0.1 1,-0.0 -2,-0.0 -0.579 31.6 141.8-163.4 94.0 -15.5 -8.4 -16.3 35 6 B D + 0 0 105 -2,-0.1 6,-0.1 1,-0.1 -1,-0.0 -0.295 21.6 132.2-131.5 51.9 -12.3 -10.3 -15.6 36 7 B E + 0 0 198 1,-0.1 2,-0.7 2,-0.1 -1,-0.1 0.336 55.7 87.2 -84.9 11.1 -13.3 -14.0 -15.3 37 8 B G - 0 0 41 -3,-0.1 2,-0.3 -26,-0.0 -1,-0.1 -0.825 67.8-157.9-113.2 96.5 -10.4 -14.9 -17.5 38 9 B S + 0 0 84 -2,-0.7 -27,-0.2 1,-0.1 4,-0.1 -0.550 47.0 108.8 -73.6 128.7 -7.3 -15.5 -15.5 39 10 B Y S S- 0 0 180 -29,-0.5 -29,-0.5 -2,-0.3 -1,-0.1 0.068 87.5 -31.9-159.3 -79.1 -4.1 -15.1 -17.7 40 11 B D S S+ 0 0 76 -31,-0.2 2,-0.3 -29,-0.2 -29,-0.2 -0.218 103.3 74.2-157.1 57.7 -1.8 -12.1 -17.3 41 12 B L + 0 0 71 -28,-0.2 -2,-0.3 -29,-0.1 -29,-0.1 -0.934 25.8 130.8-168.7 143.5 -3.7 -8.9 -16.3 42 13 B G + 0 0 33 1,-0.6 2,-0.2 -28,-0.3 -30,-0.2 0.252 64.4 59.3-162.2 -50.1 -5.3 -7.4 -13.2 43 14 B K - 0 0 122 -29,-0.5 -1,-0.6 -32,-0.0 -29,-0.5 -0.621 64.8-155.2 -93.8 155.0 -4.2 -3.8 -12.5 44 15 B K - 0 0 79 -2,-0.2 -27,-0.2 -3,-0.1 2,-0.0 -0.898 21.2-100.9-128.7 160.0 -4.7 -1.0 -15.0 45 16 B P - 0 0 58 0, 0.0 -31,-0.0 0, 0.0 -27,-0.0 -0.303 30.1-179.3 -73.2 159.1 -3.1 2.4 -15.6 46 17 B I + 0 0 55 -31,-0.2 2,-0.6 -2,-0.0 -27,-0.1 -0.245 4.9 172.8-158.4 60.7 -4.7 5.6 -14.4 47 18 B Y + 0 0 94 -29,-0.2 -29,-0.2 -28,-0.1 0, 0.0 -0.621 36.9 106.3 -77.3 116.4 -2.7 8.7 -15.3 48 19 B K + 0 0 149 -2,-0.6 2,-0.2 -31,-0.1 -30,-0.1 -0.067 34.5 137.0 172.2 74.5 -4.7 11.8 -14.3 49 20 B K - 0 0 74 -23,-0.1 -26,-0.3 -26,-0.0 -24,-0.1 -0.702 31.1-165.2-123.0 177.1 -3.6 13.9 -11.3 50 21 B A + 0 0 14 -2,-0.2 -29,-0.1 -29,-0.1 -1,-0.0 -0.093 33.5 141.8-159.5 49.1 -3.4 17.6 -10.5 51 22 B P S S- 0 0 84 0, 0.0 2,-0.3 0, 0.0 -30,-0.1 0.481 84.2 -28.5 -73.3 -1.2 -1.3 18.1 -7.3 52 23 B T S S- 0 0 69 -32,-0.3 -29,-0.2 -29,-0.2 -27,-0.1 -0.876 78.6 -77.3-178.2-148.3 0.3 21.2 -8.9 53 24 B N S S+ 0 0 107 -2,-0.3 2,-0.3 -29,-0.1 -32,-0.1 -0.317 81.7 100.9-137.9 55.5 1.2 22.6 -12.3 54 25 B E - 0 0 156 -34,-0.1 2,-0.5 -31,-0.1 -31,-0.1 -0.962 52.2-146.7-137.8 156.3 4.3 20.8 -13.5 55 26 B F - 0 0 136 -2,-0.3 2,-0.5 -33,-0.1 -35,-0.1 -0.942 15.9-178.4-128.1 115.1 5.2 18.0 -16.0 56 27 B Y 0 0 213 -2,-0.5 -2,-0.0 1,-0.1 -35,-0.0 -0.928 360.0 360.0-114.5 131.8 8.1 15.6 -15.3 57 28 B A 0 0 144 -2,-0.5 -1,-0.1 0, 0.0 0, 0.0 0.373 360.0 360.0-170.0 360.0 9.0 12.8 -17.7