==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=27-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL CYCLE/RNA 11-MAR-00 1EKZ . COMPND 2 MOLECULE: MATERNAL EFFECT PROTEIN (STAUFEN); . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR A.RAMOS,S.GRUNERT,M.BYCROFT,D.ST JOHNSTON,G.VARANI . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5648.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 226 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 98.6 -9.3 9.9 17.8 2 2 A D - 0 0 119 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.639 360.0-106.7-138.9-163.2 -9.5 10.9 21.5 3 3 A E - 0 0 146 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.860 45.0-130.4-100.0 -61.7 -7.7 10.7 24.8 4 4 A G + 0 0 65 3,-0.0 3,-0.0 0, 0.0 0, 0.0 0.512 29.1 175.8 108.5 104.8 -9.4 8.1 27.0 5 5 A D - 0 0 86 2,-0.0 0, 0.0 0, 0.0 0, 0.0 0.789 49.1 -87.1-103.8 -80.4 -10.5 8.8 30.6 6 6 A K - 0 0 203 1,-0.3 2,-0.3 0, 0.0 0, 0.0 0.188 69.6 -60.6-161.7 -60.2 -12.4 5.9 32.4 7 7 A K S S- 0 0 102 -3,-0.0 -1,-0.3 0, 0.0 -3,-0.0 -0.908 76.6 -31.5-174.8-158.1 -16.2 6.0 31.8 8 8 A S > - 0 0 54 -2,-0.3 4,-0.9 1,-0.1 55,-0.1 -0.679 39.2-157.7 -84.4 133.7 -19.4 8.1 32.4 9 9 A P H > S+ 0 0 8 0, 0.0 4,-3.6 0, 0.0 5,-0.3 0.845 85.4 71.9 -76.7 -36.6 -19.3 10.4 35.5 10 10 A I H > S+ 0 0 33 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.922 98.1 50.1 -46.2 -49.9 -23.1 10.7 35.8 11 11 A S H > S+ 0 0 56 1,-0.2 4,-3.4 2,-0.2 -1,-0.2 0.981 114.4 42.3 -56.0 -58.0 -23.3 7.0 36.9 12 12 A Q H X S+ 0 0 69 -4,-0.9 4,-3.5 1,-0.2 5,-0.4 0.891 111.5 56.6 -59.1 -36.4 -20.6 7.4 39.6 13 13 A V H X S+ 0 0 4 -4,-3.6 4,-3.1 2,-0.2 -1,-0.2 0.963 113.2 40.2 -61.0 -45.4 -22.2 10.8 40.6 14 14 A H H X S+ 0 0 71 -4,-2.8 4,-3.1 -5,-0.3 5,-0.4 0.950 115.2 52.6 -67.0 -45.5 -25.5 9.0 41.2 15 15 A E H X S+ 0 0 100 -4,-3.4 4,-3.1 -5,-0.3 5,-0.2 0.956 118.4 36.0 -55.1 -50.7 -23.7 6.0 42.8 16 16 A I H X S+ 0 0 73 -4,-3.5 4,-2.8 2,-0.2 5,-0.5 0.917 114.4 57.3 -71.2 -40.1 -21.8 8.4 45.3 17 17 A G H <>S+ 0 0 4 -4,-3.1 5,-3.6 -5,-0.4 4,-0.5 0.924 117.4 34.7 -56.6 -42.1 -24.8 10.7 45.6 18 18 A I H <5S+ 0 0 134 -4,-3.1 -2,-0.2 3,-0.2 -1,-0.2 0.941 116.6 52.8 -78.4 -48.9 -26.9 7.8 46.8 19 19 A K H <5S+ 0 0 180 -4,-3.1 -2,-0.2 -5,-0.4 -3,-0.2 0.845 128.5 22.1 -56.3 -32.2 -24.1 5.9 48.7 20 20 A R T <5S- 0 0 115 -4,-2.8 -3,-0.2 -5,-0.2 -2,-0.1 0.833 117.3 -89.1 -98.3 -78.0 -23.4 9.2 50.6 21 21 A N T 5S+ 0 0 144 -5,-0.5 2,-0.4 -4,-0.5 -3,-0.2 0.105 71.8 130.9 162.0 62.0 -26.5 11.6 50.6 22 22 A M < - 0 0 30 -5,-3.6 2,-1.1 -8,-0.2 -2,-0.1 -0.971 53.7-130.8-137.0 126.6 -26.6 13.9 47.5 23 23 A T - 0 0 80 -2,-0.4 2,-0.9 1,-0.1 25,-0.1 -0.582 26.4-153.4 -74.3 101.8 -29.4 14.6 45.1 24 24 A V + 0 0 8 -2,-1.1 2,-0.4 22,-0.2 22,-0.2 -0.656 27.8 160.8 -80.9 106.2 -27.6 14.2 41.7 25 25 A H E -A 45 0A 102 20,-2.4 20,-3.5 -2,-0.9 2,-0.4 -0.978 20.2-165.5-130.7 126.6 -29.5 16.3 39.2 26 26 A F E +A 44 0A 47 -2,-0.4 2,-0.3 18,-0.2 18,-0.2 -0.873 19.5 155.5-109.9 141.5 -28.2 17.6 35.8 27 27 A K E -A 43 0A 164 16,-3.3 16,-3.2 -2,-0.4 2,-0.4 -0.943 33.6-121.9-152.8 174.4 -29.9 20.4 33.8 28 28 A V E -A 42 0A 38 -2,-0.3 14,-0.2 14,-0.3 3,-0.1 -0.947 5.6-162.7-125.1 145.7 -29.2 23.0 31.1 29 29 A L S S+ 0 0 90 12,-1.6 2,-0.3 -2,-0.4 -1,-0.1 0.711 76.8 27.4 -99.2 -24.6 -29.7 26.8 31.4 30 30 A R S S- 0 0 165 11,-0.4 11,-0.6 3,-0.0 -1,-0.2 -0.977 113.8 -12.6-138.0 153.1 -29.6 27.8 27.7 31 31 A E S S+ 0 0 119 -2,-0.3 -3,-0.1 1,-0.1 7,-0.1 -0.194 86.3 96.6 56.3-150.3 -30.4 26.0 24.4 32 32 A E + 0 0 29 5,-0.1 -1,-0.1 3,-0.1 3,-0.1 -0.224 38.5 134.8 65.5-160.6 -30.9 22.2 24.6 33 33 A G - 0 0 33 1,-0.2 3,-0.3 -3,-0.1 5,-0.2 -0.921 68.8 -33.6 122.3-148.4 -34.5 20.8 24.9 34 34 A P S S+ 0 0 128 0, 0.0 2,-2.5 0, 0.0 -1,-0.2 0.945 130.8 35.4 -77.4 -87.1 -36.1 17.8 23.1 35 35 A A S S+ 0 0 93 -3,-0.1 2,-0.2 2,-0.1 -3,-0.1 -0.413 108.6 85.2 -69.8 79.3 -34.7 17.5 19.6 36 36 A H S S- 0 0 104 -2,-2.5 2,-0.4 -3,-0.3 -3,-0.0 -0.860 83.1 -97.6-157.1-167.4 -31.2 18.6 20.6 37 37 A M - 0 0 115 -2,-0.2 -5,-0.1 2,-0.0 -2,-0.1 -0.806 42.0-118.5-131.9 91.4 -27.8 17.4 22.0 38 38 A K S S+ 0 0 87 -2,-0.4 2,-0.2 -5,-0.2 4,-0.1 0.060 77.9 91.3 -30.0 98.7 -27.6 18.0 25.8 39 39 A N + 0 0 15 23,-0.1 2,-1.8 2,-0.1 17,-0.2 -0.821 36.0 77.8-166.9-153.4 -24.5 20.4 25.8 40 40 A F S S+ 0 0 64 15,-1.8 2,-0.3 -2,-0.2 -9,-0.1 -0.446 116.9 11.0 68.4 -85.1 -23.7 24.2 25.6 41 41 A I S S+ 0 0 37 -2,-1.8 -12,-1.6 -11,-0.6 2,-0.7 -0.599 77.8 170.5-125.2 73.9 -24.4 25.1 29.3 42 42 A T E -AB 28 53A 3 11,-1.7 11,-0.5 -2,-0.3 2,-0.3 -0.730 11.0-173.5 -87.1 117.0 -24.9 21.8 31.2 43 43 A A E -AB 27 52A 9 -16,-3.2 -16,-3.3 -2,-0.7 2,-0.4 -0.798 9.4-153.7-109.0 152.0 -25.1 22.5 34.9 44 44 A C E -AB 26 51A 1 7,-3.2 7,-3.1 -2,-0.3 2,-0.4 -0.980 4.0-160.6-127.0 134.2 -25.2 19.9 37.7 45 45 A I E -AB 25 50A 80 -20,-3.5 -20,-2.4 -2,-0.4 2,-0.3 -0.894 10.6-178.6-114.1 142.8 -26.7 20.3 41.2 46 46 A V E > - B 0 49A 7 3,-2.8 2,-4.0 -2,-0.4 3,-0.8 -0.962 46.3 -91.6-137.2 155.2 -25.9 18.1 44.2 47 47 A G T 3 S+ 0 0 35 -2,-0.3 3,-0.1 1,-0.2 -23,-0.1 -0.223 123.9 28.8 -63.7 63.9 -27.2 18.0 47.9 48 48 A S T 3 S- 0 0 88 -2,-4.0 2,-0.3 1,-0.4 -1,-0.2 0.086 127.5 -6.8 174.1 -39.2 -24.3 20.3 48.9 49 49 A I E < -B 46 0A 70 -3,-0.8 -3,-2.8 2,-0.0 -1,-0.4 -0.939 61.2-113.5-160.2-177.9 -23.3 22.6 46.0 50 50 A V E -B 45 0A 84 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.892 16.9-155.8-127.0 158.2 -23.9 23.3 42.3 51 51 A T E -B 44 0A 9 -7,-3.1 -7,-3.2 -2,-0.3 2,-0.2 -0.885 3.1-158.4-140.6 111.5 -21.6 23.0 39.2 52 52 A E E -B 43 0A 105 -2,-0.4 2,-0.3 -9,-0.3 -9,-0.2 -0.597 9.8-174.3 -85.0 146.3 -22.0 24.9 36.0 53 53 A G E -B 42 0A 9 -11,-0.5 2,-3.1 -2,-0.2 -11,-1.7 -0.734 16.8-162.0-145.2 95.7 -20.3 23.4 32.8 54 54 A E + 0 0 133 -2,-0.3 2,-0.4 -13,-0.3 -13,-0.2 -0.291 25.6 178.6 -72.9 63.1 -20.3 25.4 29.5 55 55 A G - 0 0 1 -2,-3.1 -15,-1.8 -13,-0.2 2,-0.5 -0.524 11.1-173.6 -70.1 122.3 -19.4 22.2 27.5 56 56 A N + 0 0 120 -2,-0.4 2,-0.2 -17,-0.2 5,-0.1 -0.591 56.7 33.8-117.6 72.0 -19.3 23.2 23.8 57 57 A G S > S- 0 0 32 -2,-0.5 3,-2.2 3,-0.4 -17,-0.1 -0.744 94.5 -85.3 157.3 154.7 -18.9 19.8 22.0 58 58 A K T 3 S+ 0 0 193 1,-0.3 -1,-0.1 -2,-0.2 -3,-0.0 0.686 127.5 53.2 -56.2 -15.1 -19.9 16.1 22.1 59 59 A K T 3 S+ 0 0 82 -3,-0.1 -1,-0.3 4,-0.1 2,-0.3 0.562 111.1 47.0 -98.2 -8.4 -16.8 15.6 24.5 60 60 A V S < S+ 0 0 46 -3,-2.2 -3,-0.4 3,-0.1 -20,-0.1 -0.800 81.7 58.0-126.1 169.4 -17.8 18.4 27.0 61 61 A S S S+ 0 0 5 -2,-0.3 2,-2.1 1,-0.2 3,-0.1 0.610 111.4 18.3 77.6 119.8 -21.0 19.3 28.8 62 62 A K S > S+ 0 0 92 -20,-0.3 4,-2.1 1,-0.2 5,-0.3 -0.423 133.1 46.2 83.6 -61.2 -22.7 16.7 31.0 63 63 A K H > S+ 0 0 52 -2,-2.1 4,-3.2 2,-0.2 -1,-0.2 0.986 120.2 37.5 -72.6 -57.6 -19.4 14.7 31.1 64 64 A R H > S+ 0 0 116 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.921 121.3 47.8 -59.1 -43.8 -17.2 17.8 31.8 65 65 A A H > S+ 0 0 0 -12,-0.2 4,-2.1 2,-0.2 5,-0.2 0.984 117.2 39.8 -63.3 -56.5 -19.9 19.3 34.1 66 66 A A H X S+ 0 0 0 -4,-2.1 4,-2.7 1,-0.2 -2,-0.2 0.915 112.3 58.4 -60.6 -40.3 -20.6 16.1 36.1 67 67 A E H X S+ 0 0 64 -4,-3.2 4,-3.6 -5,-0.3 5,-0.3 0.952 105.7 48.4 -56.0 -48.1 -16.8 15.3 36.1 68 68 A K H X S+ 0 0 95 -4,-2.3 4,-2.8 1,-0.2 5,-0.4 0.955 109.9 52.1 -58.8 -45.2 -16.2 18.7 37.9 69 69 A M H X S+ 0 0 2 -4,-2.1 4,-3.0 2,-0.2 5,-0.3 0.917 114.4 44.9 -57.1 -38.5 -18.9 17.8 40.4 70 70 A L H X S+ 0 0 15 -4,-2.7 4,-3.0 2,-0.2 -2,-0.2 0.982 113.4 46.4 -69.8 -56.9 -17.1 14.5 40.9 71 71 A V H < S+ 0 0 71 -4,-3.6 -2,-0.2 2,-0.2 -1,-0.2 0.848 122.2 39.8 -56.9 -30.8 -13.5 15.9 41.2 72 72 A E H >X S+ 0 0 66 -4,-2.8 3,-2.3 -5,-0.3 4,-1.2 0.940 116.0 47.5 -84.4 -50.2 -14.9 18.6 43.6 73 73 A L H 3< S+ 0 0 13 -4,-3.0 -2,-0.2 -5,-0.4 -3,-0.2 0.839 103.5 64.6 -59.6 -29.1 -17.4 16.4 45.6 74 74 A Q T 3< S+ 0 0 135 -4,-3.0 -1,-0.3 -5,-0.3 -2,-0.2 0.655 103.5 49.3 -68.9 -9.9 -14.5 13.8 45.9 75 75 A K T <4 0 0 135 -3,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.757 360.0 360.0 -97.1 -31.5 -12.7 16.6 48.0 76 76 A L < 0 0 140 -4,-1.2 -1,-0.2 -3,-0.1 -4,-0.0 -0.961 360.0 360.0-116.8 360.0 -15.6 17.4 50.3