==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=30-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 23-MAR-07 2EKI . COMPND 2 MOLECULE: DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.SATO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6978.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 4.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 17.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 16.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 121 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-122.8 26.1 12.6 15.2 2 2 A S - 0 0 137 1,-0.1 2,-0.0 2,-0.1 0, 0.0 -0.074 360.0-146.6 -38.2 104.0 26.7 9.4 13.2 3 3 A S + 0 0 123 1,-0.2 3,-0.1 0, 0.0 -1,-0.1 -0.239 54.3 110.0 -74.1 166.3 23.2 8.0 13.0 4 4 A G + 0 0 76 1,-0.6 -1,-0.2 -2,-0.0 2,-0.1 -0.003 51.2 93.8 158.9 -39.9 22.4 4.3 13.0 5 5 A S S S- 0 0 113 1,-0.1 -1,-0.6 0, 0.0 0, 0.0 -0.409 85.3 -85.5 -79.3 156.8 20.7 3.4 16.3 6 6 A S S S+ 0 0 110 1,-0.1 -1,-0.1 -2,-0.1 2,-0.1 -0.159 70.4 120.1 -58.3 154.0 16.9 3.3 16.7 7 7 A G S S+ 0 0 67 -3,-0.1 -1,-0.1 3,-0.0 0, 0.0 -0.353 73.9 14.8-171.1-102.4 15.1 6.6 17.5 8 8 A Y S S+ 0 0 206 -2,-0.1 2,-1.5 1,-0.1 -2,-0.1 0.035 82.3 135.4 -86.3 27.7 12.5 8.5 15.6 9 9 A L - 0 0 94 24,-0.1 -1,-0.1 23,-0.0 2,-0.1 -0.611 37.4-170.6 -80.8 88.8 11.8 5.5 13.5 10 10 A K - 0 0 117 -2,-1.5 23,-2.9 22,-0.1 2,-0.4 -0.320 12.7-138.0 -76.7 162.3 8.0 5.4 13.5 11 11 A L E -A 32 0A 96 21,-0.2 2,-0.4 22,-0.1 19,-0.0 -0.982 12.4-162.3-128.8 123.3 6.0 2.5 12.1 12 12 A V E -A 31 0A 2 19,-2.4 19,-2.6 -2,-0.4 2,-0.4 -0.837 10.4-142.1-106.0 140.7 2.9 2.8 10.0 13 13 A R E -A 30 0A 137 -2,-0.4 67,-1.3 17,-0.2 66,-1.1 -0.825 10.7-160.8-103.3 138.8 0.3 0.1 9.4 14 14 A I E -Ab 29 80A 1 15,-1.7 15,-1.8 -2,-0.4 2,-0.9 -0.974 10.3-146.3-123.0 125.7 -1.4 -0.5 6.1 15 15 A Y E - b 0 81A 30 65,-2.7 67,-2.1 -2,-0.5 2,-0.1 -0.773 19.9-147.4 -92.7 102.1 -4.7 -2.5 5.7 16 16 A T E - b 0 82A 28 -2,-0.9 8,-0.7 65,-0.2 67,-0.2 -0.399 1.8-148.8 -68.8 142.2 -4.5 -4.3 2.3 17 17 A K - 0 0 62 65,-2.9 2,-0.5 6,-0.2 40,-0.1 -0.826 8.5-155.1-118.0 92.6 -7.8 -4.7 0.5 18 18 A P > - 0 0 53 0, 0.0 3,-1.7 0, 0.0 67,-0.1 -0.528 32.9-104.3 -69.8 115.3 -7.8 -7.9 -1.6 19 19 A K T 3 S+ 0 0 136 65,-0.5 2,-1.0 -2,-0.5 3,-0.1 -0.012 105.1 10.5 -38.3 135.6 -10.3 -7.6 -4.5 20 20 A G T 3 S+ 0 0 89 1,-0.2 -1,-0.3 -3,-0.1 2,-0.1 -0.187 121.7 76.1 84.3 -45.0 -13.4 -9.7 -3.7 21 21 A Q S < S- 0 0 148 -3,-1.7 -1,-0.2 -2,-1.0 3,-0.0 -0.400 89.1 -96.8 -93.5 173.1 -12.3 -10.2 -0.1 22 22 A L - 0 0 117 -2,-0.1 2,-0.5 -3,-0.1 -1,-0.1 -0.627 41.3 -98.4 -92.3 150.0 -12.4 -7.9 2.9 23 23 A P - 0 0 8 0, 0.0 -6,-0.2 0, 0.0 -1,-0.1 -0.525 40.7-120.3 -69.7 117.4 -9.4 -5.8 4.1 24 24 A D + 0 0 51 -8,-0.7 -8,-0.1 -2,-0.5 -3,-0.0 -0.342 30.8 179.5 -59.9 131.8 -7.7 -7.6 7.0 25 25 A Y S S+ 0 0 135 -10,-0.1 -1,-0.1 3,-0.1 -10,-0.0 0.243 79.3 48.3-117.3 8.7 -7.7 -5.4 10.1 26 26 A T S S+ 0 0 126 1,-0.1 -2,-0.1 0, 0.0 -1,-0.0 0.529 113.3 42.8-121.0 -18.2 -5.9 -7.8 12.4 27 27 A S S S+ 0 0 85 2,-0.0 -3,-0.1 0, 0.0 -2,-0.1 -0.347 80.3 155.8-127.0 51.2 -3.0 -8.9 10.1 28 28 A P - 0 0 41 0, 0.0 2,-0.6 0, 0.0 -13,-0.2 -0.064 46.5-100.9 -69.7 175.1 -1.9 -5.5 8.7 29 29 A V E -A 14 0A 20 -15,-1.8 -15,-1.7 2,-0.0 2,-1.0 -0.903 23.7-148.4-107.0 120.1 1.6 -4.7 7.3 30 30 A V E -A 13 0A 74 -2,-0.6 -17,-0.2 -17,-0.2 48,-0.0 -0.738 22.2-174.8 -89.4 99.6 3.9 -2.7 9.5 31 31 A L E -A 12 0A 0 -19,-2.6 -19,-2.4 -2,-1.0 2,-0.3 -0.731 30.5-105.8 -97.3 144.0 6.1 -0.6 7.2 32 32 A P E > -A 11 0A 38 0, 0.0 3,-2.0 0, 0.0 -21,-0.2 -0.508 22.0-135.3 -69.8 123.6 9.0 1.6 8.4 33 33 A Y T 3 S+ 0 0 126 -23,-2.9 3,-0.2 -2,-0.3 -22,-0.1 0.912 103.5 64.8 -41.2 -59.4 8.2 5.3 8.4 34 34 A S T 3 S+ 0 0 70 -24,-0.3 2,-0.5 1,-0.2 -1,-0.3 0.807 113.1 37.4 -34.5 -40.3 11.5 6.2 6.8 35 35 A R S < S+ 0 0 164 -3,-2.0 2,-0.4 2,-0.0 -1,-0.2 -0.879 75.2 151.2-122.7 99.2 10.2 4.2 3.8 36 36 A T + 0 0 19 -2,-0.5 2,-0.3 -3,-0.2 3,-0.1 -0.928 20.3 115.8-133.2 109.6 6.5 4.6 3.1 37 37 A T >> - 0 0 34 -2,-0.4 4,-1.4 38,-0.3 3,-1.4 -0.968 68.3-108.7-167.5 153.0 5.2 4.3 -0.4 38 38 A V H >> S+ 0 0 0 36,-2.0 4,-2.3 -2,-0.3 3,-0.6 0.910 121.1 52.9 -51.5 -47.5 2.8 2.1 -2.5 39 39 A E H 3> S+ 0 0 101 33,-1.7 4,-0.6 1,-0.2 -1,-0.3 0.721 105.7 57.5 -62.3 -20.3 5.8 0.7 -4.4 40 40 A D H <> S+ 0 0 38 -3,-1.4 4,-0.9 32,-0.2 -1,-0.2 0.832 108.2 44.3 -78.9 -34.5 7.2 -0.2 -1.0 41 41 A F H XX S+ 0 0 2 -4,-1.4 4,-1.4 -3,-0.6 3,-0.8 0.942 101.5 64.3 -74.8 -50.6 4.2 -2.3 0.0 42 42 A C H 3X S+ 0 0 0 -4,-2.3 4,-2.6 1,-0.3 7,-0.3 0.810 101.8 55.3 -42.3 -34.6 3.8 -4.2 -3.2 43 43 A M H 3< S+ 0 0 87 -4,-0.6 -1,-0.3 -5,-0.2 -2,-0.2 0.933 98.0 59.9 -66.9 -47.4 7.2 -5.6 -2.4 44 44 A K H << S+ 0 0 122 -4,-0.9 -2,-0.2 -3,-0.8 -1,-0.2 0.903 115.0 35.8 -46.7 -49.0 6.1 -6.9 1.0 45 45 A I H < S- 0 0 103 -4,-1.4 2,-0.3 1,-0.3 -1,-0.2 0.960 138.6 -6.3 -71.1 -53.6 3.5 -9.1 -0.7 46 46 A H >< - 0 0 96 -4,-2.6 3,-1.0 -5,-0.2 4,-0.4 -0.998 51.1-138.2-146.9 145.4 5.5 -10.0 -3.8 47 47 A K T 3 S+ 0 0 152 -2,-0.3 -4,-0.1 1,-0.2 -3,-0.1 0.538 112.2 38.7 -78.0 -6.3 8.9 -9.0 -5.2 48 48 A N T 3 S+ 0 0 74 -6,-0.2 4,-0.3 -5,-0.1 -1,-0.2 -0.025 85.1 101.7-131.8 28.9 7.2 -8.8 -8.6 49 49 A L X> + 0 0 11 -3,-1.0 4,-2.9 -7,-0.3 3,-2.6 0.888 69.8 66.6 -80.1 -42.5 3.8 -7.4 -7.7 50 50 A I T 34 S+ 0 0 48 -4,-0.4 -1,-0.2 1,-0.3 -2,-0.1 0.726 92.1 67.4 -51.2 -21.1 4.6 -3.8 -8.9 51 51 A K T 34 S+ 0 0 143 1,-0.2 -1,-0.3 -3,-0.1 -2,-0.2 0.824 113.9 26.3 -69.8 -32.0 4.7 -5.4 -12.4 52 52 A E T <4 S+ 0 0 105 -3,-2.6 35,-1.8 -4,-0.3 -2,-0.2 0.711 93.2 113.0-100.7 -28.8 1.0 -6.1 -12.2 53 53 A F E < +D 86 0B 16 -4,-2.9 33,-0.2 33,-0.2 3,-0.1 -0.246 34.9 170.7 -49.9 116.1 0.0 -3.3 -9.8 54 54 A K E - 0 0 125 31,-2.0 2,-0.3 1,-0.4 -1,-0.2 0.830 59.0 -30.0 -97.0 -43.6 -2.1 -0.9 -11.9 55 55 A Y E -D 85 0B 62 30,-0.5 30,-1.6 28,-0.1 -1,-0.4 -0.977 51.7-129.8-166.1 170.1 -3.4 1.4 -9.2 56 56 A A E -DE 84 70B 0 14,-1.5 14,-1.5 -2,-0.3 2,-0.8 -0.996 9.0-144.1-136.7 139.8 -4.3 1.7 -5.5 57 57 A L E - E 0 69B 33 26,-0.6 26,-0.4 -2,-0.4 2,-0.2 -0.828 21.2-160.8-106.1 96.2 -7.4 3.1 -3.8 58 58 A V E - E 0 68B 0 10,-1.2 10,-0.8 -2,-0.8 2,-0.5 -0.507 2.2-161.1 -76.5 141.8 -6.4 4.8 -0.5 59 59 A W B +C 81 0A 69 22,-1.4 22,-1.0 -2,-0.2 2,-0.3 -0.889 49.7 45.2-129.1 101.6 -9.1 5.4 2.1 60 60 A G S > S- 0 0 23 -2,-0.5 3,-1.7 3,-0.2 20,-0.1 -0.975 103.2 -44.8 160.8-171.1 -8.3 8.0 4.8 61 61 A L T 3 S+ 0 0 157 -2,-0.3 -1,-0.1 1,-0.3 19,-0.1 0.858 113.4 82.4 -55.4 -37.0 -7.0 11.5 5.6 62 62 A S T 3 S+ 0 0 42 -3,-0.1 2,-0.3 2,-0.1 -1,-0.3 0.814 100.6 38.2 -36.2 -39.9 -4.1 10.8 3.2 63 63 A V S < S- 0 0 9 -3,-1.7 3,-0.2 1,-0.1 -3,-0.2 -0.904 71.3-146.6-119.3 147.1 -6.6 11.8 0.5 64 64 A K S S+ 0 0 187 -2,-0.3 2,-0.6 1,-0.3 -1,-0.1 0.945 93.3 29.9 -73.7 -50.6 -9.2 14.5 0.4 65 65 A H S S- 0 0 149 -4,-0.0 -1,-0.3 -6,-0.0 -4,-0.0 -0.932 95.3-126.2-117.3 110.8 -11.7 12.6 -1.8 66 66 A N S S+ 0 0 78 -2,-0.6 2,-0.1 -3,-0.2 -7,-0.1 -0.802 83.7 44.3-113.9 155.5 -11.7 8.8 -1.6 67 67 A P S S+ 0 0 80 0, 0.0 2,-0.4 0, 0.0 -8,-0.1 0.491 81.8 176.6 -69.8 149.3 -11.6 6.5 -3.1 68 68 A Q E -E 58 0B 78 -10,-0.8 -10,-1.2 -2,-0.1 2,-0.3 -0.985 30.5-120.9-127.9 133.5 -8.7 8.1 -5.0 69 69 A K E +E 57 0B 142 -2,-0.4 2,-0.3 -12,-0.2 -12,-0.2 -0.542 37.8 177.3 -73.1 128.6 -6.5 6.5 -7.7 70 70 A V E -E 56 0B 12 -14,-1.5 -14,-1.5 -2,-0.3 2,-0.0 -0.939 17.4-143.9-132.8 155.0 -2.8 6.5 -6.7 71 71 A G - 0 0 28 -2,-0.3 3,-0.2 -16,-0.2 -33,-0.1 0.112 44.3 -80.8 -95.2-149.7 0.4 5.2 -8.3 72 72 A K S S+ 0 0 98 1,-0.2 -33,-1.7 -34,-0.1 -32,-0.2 0.506 123.5 62.9 -95.5 -7.6 3.6 3.7 -6.9 73 73 A D S S+ 0 0 114 -35,-0.1 -1,-0.2 -36,-0.1 2,-0.1 0.425 78.5 115.3 -94.8 -1.2 5.0 7.0 -6.0 74 74 A H - 0 0 33 -3,-0.2 -36,-2.0 1,-0.1 2,-0.4 -0.412 67.7-122.5 -70.9 144.3 2.2 7.7 -3.5 75 75 A T - 0 0 83 -38,-0.2 -38,-0.3 -2,-0.1 2,-0.3 -0.750 21.1-142.1 -92.3 132.4 3.0 8.0 0.2 76 76 A L - 0 0 5 -2,-0.4 2,-0.3 -43,-0.1 -62,-0.1 -0.643 14.0-158.3 -92.9 149.8 1.3 5.6 2.6 77 77 A E - 0 0 50 -2,-0.3 3,-0.4 -64,-0.1 -40,-0.0 -0.866 30.1 -84.4-125.8 159.8 0.2 6.7 6.1 78 78 A D S S+ 0 0 69 -2,-0.3 -64,-0.1 1,-0.2 -66,-0.1 -0.293 111.3 19.7 -61.6 143.6 -0.5 4.8 9.3 79 79 A E S S+ 0 0 112 -66,-1.1 2,-0.4 1,-0.2 -1,-0.2 0.955 94.1 139.2 60.7 52.8 -4.1 3.4 9.6 80 80 A D E -b 14 0A 0 -67,-1.3 -65,-2.7 -3,-0.4 2,-0.4 -0.988 45.6-139.7-131.7 139.1 -4.7 3.5 5.9 81 81 A V E -bC 15 59A 17 -22,-1.0 -22,-1.4 -2,-0.4 2,-0.4 -0.813 18.1-173.2-100.1 135.4 -6.4 1.0 3.6 82 82 A I E -b 16 0A 0 -67,-2.1 -65,-2.9 -2,-0.4 2,-0.8 -0.992 14.8-151.7-131.6 129.9 -5.1 0.2 0.2 83 83 A Q - 0 0 33 -26,-0.4 -26,-0.6 -2,-0.4 2,-0.6 -0.841 14.9-150.1-103.2 101.3 -6.7 -2.0 -2.5 84 84 A I E -D 56 0B 20 -2,-0.8 -65,-0.5 -28,-0.2 2,-0.3 -0.578 16.6-165.2 -73.2 116.3 -4.1 -3.5 -4.8 85 85 A V E -D 55 0B 15 -30,-1.6 -31,-2.0 -2,-0.6 -30,-0.5 -0.810 9.2-144.1-105.7 145.1 -5.5 -4.0 -8.2 86 86 A K E -D 53 0B 125 -2,-0.3 -33,-0.2 -33,-0.2 -34,-0.1 -0.920 30.0-102.1-111.5 129.6 -4.0 -6.2 -11.0 87 87 A K - 0 0 100 -35,-1.8 2,-0.5 -2,-0.5 -1,-0.1 0.029 32.3-135.6 -41.8 151.3 -4.2 -5.2 -14.7 88 88 A S + 0 0 128 2,-0.0 -1,-0.1 3,-0.0 0, 0.0 -0.922 51.6 99.2-121.6 106.9 -6.9 -7.0 -16.7 89 89 A G S S- 0 0 57 -2,-0.5 2,-0.5 2,-0.0 0, 0.0 -0.987 75.1 -60.8-171.6 171.5 -5.8 -8.3 -20.1 90 90 A P - 0 0 137 0, 0.0 2,-0.5 0, 0.0 -2,-0.0 -0.532 48.7-159.6 -69.8 114.1 -4.7 -11.3 -22.3 91 91 A S - 0 0 109 -2,-0.5 2,-0.5 0, 0.0 -2,-0.0 -0.850 9.2-139.3-100.8 126.0 -1.4 -12.6 -20.9 92 92 A S 0 0 125 -2,-0.5 0, 0.0 0, 0.0 0, 0.0 -0.715 360.0 360.0 -86.3 123.9 0.8 -14.6 -23.2 93 93 A G 0 0 122 -2,-0.5 0, 0.0 0, 0.0 0, 0.0 0.111 360.0 360.0 39.2 360.0 2.4 -17.6 -21.5